RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 NFKB1P19838 968 aa8.05□□□□□ -1.12
USP40-216ENST00000485943 RBL1P28749 1068 aa8.05□□□□□ -1.12
USP40-216ENST00000485943 GRK6P43250 576 aa8.05□□□□□ -1.12
USP40-216ENST00000485943 PSMA6P60900 246 aaKnown RBP8.05□□□□□ -1.12
USP40-216ENST00000485943 YPEL5P62699 121 aa8.05□□□□□ -1.12
USP40-216ENST00000485943 CCZ1BP86790 482 aa8.05□□□□□ -1.12
USP40-216ENST00000485943 CCZ1P86791 482 aaPredicted RBP8.05□□□□□ -1.12
USP40-216ENST00000485943 RELBQ01201 579 aa8.05□□□□□ -1.12
USP40-216ENST00000485943 CDK18Q07002 472 aa8.05□□□□□ -1.12
USP40-216ENST00000485943 TRAF2Q12933 501 aa8.05□□□□□ -1.12
USP40-216ENST00000485943 MPP3Q13368 585 aa8.05□□□□□ -1.12
USP40-216ENST00000485943 SNX1Q13596 522 aa8.05□□□□□ -1.12
USP40-216ENST00000485943 GALNT3Q14435 633 aa8.05□□□□□ -1.12
USP40-216ENST00000485943 NOMO1Q15155 1222 aa8.05□□□□□ -1.12
USP40-216ENST00000485943 IRF4Q15306 451 aa8.05□□□□□ -1.12
USP40-216ENST00000485943 TMEM52BQ4KMG9 183 aa8.05□□□□□ -1.12
USP40-216ENST00000485943 PPM1JQ5JR12 505 aa8.05□□□□□ -1.12
USP40-216ENST00000485943 PEAR1Q5VY43 1037 aaPredicted RBP8.05□□□□□ -1.12
USP40-216ENST00000485943 PSAPL1Q6NUJ1 521 aa8.05□□□□□ -1.12
USP40-216ENST00000485943 KYAT3Q6YP21 454 aaKnown RBP8.05□□□□□ -1.12
USP40-216ENST00000485943 PPP1R21Q6ZMI0 780 aa8.05□□□□□ -1.12
USP40-216ENST00000485943 DPPA4Q7L190 304 aa8.05□□□□□ -1.12
USP40-216ENST00000485943 HID1Q8IV36 788 aa8.05□□□□□ -1.12
USP40-216ENST00000485943 NAXDQ8IW45 347 aa8.05□□□□□ -1.12
USP40-216ENST00000485943 SLC25A41Q8N5S1 370 aa8.05□□□□□ -1.12
USP40-216ENST00000485943 TEX26Q8N6G2 289 aa8.05□□□□□ -1.12
USP40-216ENST00000485943 DNAAF3Q8N9W5 541 aa8.05□□□□□ -1.12
USP40-216ENST00000485943 DEFB124Q8NES8 71 aa8.05□□□□□ -1.12
USP40-216ENST00000485943 ZDHHC1Q8WTX9 485 aa8.05□□□□□ -1.12
USP40-216ENST00000485943 MAML1Q92585 1016 aa8.05□□□□□ -1.12
USP40-216ENST00000485943 FATE1Q969F0 183 aa8.05□□□□□ -1.12
USP40-216ENST00000485943 CDC6Q99741 560 aa8.05□□□□□ -1.12
USP40-216ENST00000485943 FAM118BQ9BPY3 351 aa8.05□□□□□ -1.12
USP40-216ENST00000485943 SPATA16Q9BXB7 569 aa8.05□□□□□ -1.12
USP40-216ENST00000485943 TDRD1Q9BXT4 1180 aaKnown RBP8.05□□□□□ -1.12
USP40-216ENST00000485943 SYNDIG1Q9H7V2 258 aa8.05□□□□□ -1.12
USP40-216ENST00000485943 SPASTQ9UBP0 616 aa8.05□□□□□ -1.12
USP40-216ENST00000485943 APOBEC3BQ9UH17 382 aaKnown RBP8.05□□□□□ -1.12
USP40-216ENST00000485943 GGT7Q9UJ14 662 aa8.05□□□□□ -1.12
USP40-216ENST00000485943 SALL4Q9UJQ4 1053 aa8.05□□□□□ -1.12
USP40-216ENST00000485943 APOBEC2Q9Y235 224 aaKnown RBP8.05□□□□□ -1.12
USP40-216ENST00000485943 CA5BQ9Y2D0 317 aa8.05□□□□□ -1.12
USP40-216ENST00000485943 DOCK9Q9BZ29 2069 aa8.04□□□□□ -1.12
USP40-216ENST00000485943 CAPN8A6NHC0 703 aa8.04□□□□□ -1.12
USP40-216ENST00000485943 C2orf81A6NN90 581 aa8.04□□□□□ -1.12
USP40-216ENST00000485943 H0Y8X5 98 aa8.04□□□□□ -1.12
USP40-216ENST00000485943 PSMD11O00231 422 aa8.04□□□□□ -1.12
USP40-216ENST00000485943 MEN1O00255 615 aa8.04□□□□□ -1.12
USP40-216ENST00000485943 MUSKO15146 869 aa8.04□□□□□ -1.12
USP40-216ENST00000485943 FFAR2O15552 330 aa8.04□□□□□ -1.12
USP40-216ENST00000485943 SDC3O75056 442 aa8.04□□□□□ -1.12
USP40-216ENST00000485943 RASGRP1O95267 797 aa8.04□□□□□ -1.12
USP40-216ENST00000485943 LDOC1O95751 146 aaPredicted RBP8.04□□□□□ -1.12
USP40-216ENST00000485943 FGGP02679 453 aa8.04□□□□□ -1.12
USP40-216ENST00000485943 ALPIP09923 528 aa8.04□□□□□ -1.12
USP40-216ENST00000485943 PTPN3P26045 913 aa8.04□□□□□ -1.12
USP40-216ENST00000485943 PTPN7P35236 360 aa8.04□□□□□ -1.12
USP40-216ENST00000485943 MMP12P39900 470 aa8.04□□□□□ -1.12
USP40-216ENST00000485943 PAFAH1B1P43034 410 aa8.04□□□□□ -1.12
USP40-216ENST00000485943 DUSP3P51452 185 aaPredicted RBP8.04□□□□□ -1.12
USP40-216ENST00000485943 NXPH1P58417 271 aa8.04□□□□□ -1.12
USP40-216ENST00000485943 TAS2R38P59533 333 aa8.04□□□□□ -1.12
USP40-216ENST00000485943 GNG11P61952 73 aa8.04□□□□□ -1.12
USP40-216ENST00000485943 SIM1P81133 766 aaPredicted RBP8.04□□□□□ -1.12
USP40-216ENST00000485943 SARNPP82979 210 aaKnown RBP8.04□□□□□ -1.12
USP40-216ENST00000485943 PDE1BQ01064 536 aa8.04□□□□□ -1.12
USP40-216ENST00000485943 SLC10A2Q12908 348 aaPredicted RBP8.04□□□□□ -1.12
USP40-216ENST00000485943 ZBTB17Q13105 803 aa8.04□□□□□ -1.12
USP40-216ENST00000485943 MTM1Q13496 603 aa8.04□□□□□ -1.12
USP40-216ENST00000485943 GTF2H3Q13889 308 aa8.04□□□□□ -1.12
USP40-216ENST00000485943 INPP5AQ14642 412 aa8.04□□□□□ -1.12
USP40-216ENST00000485943 PRKD1Q15139 912 aaPredicted RBP8.04□□□□□ -1.12
USP40-216ENST00000485943 ELOCQ15369 112 aa8.04□□□□□ -1.12
USP40-216ENST00000485943 LRRC66Q68CR7 880 aa8.04□□□□□ -1.12
USP40-216ENST00000485943 ESRP1Q6NXG1 681 aaKnown RBP8.04□□□□□ -1.12
USP40-216ENST00000485943 DOK6Q6PKX4 331 aa8.04□□□□□ -1.12
USP40-216ENST00000485943 LIPIQ6XZB0 460 aa8.04□□□□□ -1.12
USP40-216ENST00000485943 GLT6D1Q7Z4J2 308 aa8.04□□□□□ -1.12
USP40-216ENST00000485943 GKN2Q86XP6 184 aa8.04□□□□□ -1.12
USP40-216ENST00000485943 PGBD5Q8N414 524 aa8.04□□□□□ -1.12
USP40-216ENST00000485943 LRRC57Q8N9N7 239 aa8.04□□□□□ -1.12
USP40-216ENST00000485943 OR13H1Q8NG92 308 aa8.04□□□□□ -1.12
USP40-216ENST00000485943 OR2I1PQ8NGU4 316 aa8.04□□□□□ -1.12
USP40-216ENST00000485943 BLOC1S5Q8TDH9 187 aa8.04□□□□□ -1.12
USP40-216ENST00000485943 LMX1AQ8TE12 382 aa8.04□□□□□ -1.12
USP40-216ENST00000485943 ASB12Q8WXK4 309 aa8.04□□□□□ -1.12
USP40-216ENST00000485943 AP2M1Q96CW1 435 aa8.04□□□□□ -1.12
USP40-216ENST00000485943 SCRN2Q96FV2 425 aa8.04□□□□□ -1.12
USP40-216ENST00000485943 PBKQ96KB5 322 aa8.04□□□□□ -1.12
USP40-216ENST00000485943 TEKT5Q96M29 485 aa8.04□□□□□ -1.12
USP40-216ENST00000485943 WDR92Q96MX6 357 aa8.04□□□□□ -1.12
USP40-216ENST00000485943 LENG8Q96PV6 779 aaPredicted RBP8.04□□□□□ -1.12
USP40-216ENST00000485943 DUSP23Q9BVJ7 150 aa8.04□□□□□ -1.12
USP40-216ENST00000485943 ABCG4Q9H172 646 aa8.04□□□□□ -1.12
USP40-216ENST00000485943 CARD9Q9H257 536 aa8.04□□□□□ -1.12
USP40-216ENST00000485943 ZNF395Q9H8N7 513 aaPredicted RBP8.04□□□□□ -1.12
USP40-216ENST00000485943 ERVMER34-1Q9H9K5 563 aa8.04□□□□□ -1.12
USP40-216ENST00000485943 ZFYVE1Q9HBF4 777 aa8.04□□□□□ -1.12
USP40-216ENST00000485943 HACD3Q9P035 362 aa8.04□□□□□ -1.12
USP40-216ENST00000485943 CD84Q9UIB8 345 aa8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms