RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 WNT9AO14904 365 aa12.22□□□□□ -0.45
SDC1-206ENST00000482879 GALR2O43603 387 aaPredicted RBP12.22□□□□□ -0.45
SDC1-206ENST00000482879 RECQL5O94762 991 aaPredicted RBP12.22□□□□□ -0.45
SDC1-206ENST00000482879 FSBPO95073 299 aa12.22□□□□□ -0.45
SDC1-206ENST00000482879 TUBBP07437 444 aa12.22□□□□□ -0.45
SDC1-206ENST00000482879 MYBL2P10244 700 aa12.22□□□□□ -0.45
SDC1-206ENST00000482879 BCKDHBP21953 392 aa12.22□□□□□ -0.45
SDC1-206ENST00000482879 NMBRP28336 390 aa12.22□□□□□ -0.45
SDC1-206ENST00000482879 MAT2AP31153 395 aaKnown RBP12.22□□□□□ -0.45
SDC1-206ENST00000482879 ETV3P41162 512 aa12.22□□□□□ -0.45
SDC1-206ENST00000482879 MAGEA4P43358 317 aa12.22□□□□□ -0.45
SDC1-206ENST00000482879 SPINT3P49223 89 aa12.22□□□□□ -0.45
SDC1-206ENST00000482879 CCR5P51681 352 aa12.22□□□□□ -0.45
SDC1-206ENST00000482879 NUBP1P53384 320 aa12.22□□□□□ -0.45
SDC1-206ENST00000482879 PPP2CBP62714 309 aa12.22□□□□□ -0.45
SDC1-206ENST00000482879 PPP2CAP67775 309 aa12.22□□□□□ -0.45
SDC1-206ENST00000482879 RPL6Q02878 288 aaKnown RBP12.22□□□□□ -0.45
SDC1-206ENST00000482879 FASTKD3Q14CZ7 662 aaKnown RBP12.22□□□□□ -0.45
SDC1-206ENST00000482879 ZNF284Q2VY69 593 aa12.22□□□□□ -0.45
SDC1-206ENST00000482879 ZNF528Q3MIS6 628 aa12.22□□□□□ -0.45
SDC1-206ENST00000482879 TMEM259Q4ZIN3 620 aa12.22□□□□□ -0.45
SDC1-206ENST00000482879 ARMC3Q5W041 872 aa12.22□□□□□ -0.45
SDC1-206ENST00000482879 KIAA0895LQ68EN5 471 aa12.22□□□□□ -0.45
SDC1-206ENST00000482879 ESRP1Q6NXG1 681 aaKnown RBP12.22□□□□□ -0.45
SDC1-206ENST00000482879 CES3Q6UWW8 571 aa12.22□□□□□ -0.45
SDC1-206ENST00000482879 RFLNAQ6ZTI6 216 aa12.22□□□□□ -0.45
SDC1-206ENST00000482879 Q6ZVL8 140 aa12.22□□□□□ -0.45
SDC1-206ENST00000482879 TECPR1Q7Z6L1 1165 aa12.22□□□□□ -0.45
SDC1-206ENST00000482879 TRIM69Q86WT6 500 aa12.22□□□□□ -0.45
SDC1-206ENST00000482879 CCNJLQ8IV13 435 aa12.22□□□□□ -0.45
SDC1-206ENST00000482879 ZBED8Q8IZ13 594 aa12.22□□□□□ -0.45
SDC1-206ENST00000482879 DEFB119Q8N690 84 aa12.22□□□□□ -0.45
SDC1-206ENST00000482879 FBXO36Q8NEA4 188 aa12.22□□□□□ -0.45
SDC1-206ENST00000482879 MYRIPQ8NFW9 859 aa12.22□□□□□ -0.45
SDC1-206ENST00000482879 OR13C4Q8NGS5 318 aa12.22□□□□□ -0.45
SDC1-206ENST00000482879 PYROXD1Q8WU10 500 aa12.22□□□□□ -0.45
SDC1-206ENST00000482879 CFAP36Q96G28 342 aa12.22□□□□□ -0.45
SDC1-206ENST00000482879 DNAJC1Q96KC8 554 aaKnown RBP12.22□□□□□ -0.45
SDC1-206ENST00000482879 COQ10AQ96MF6 247 aa12.22□□□□□ -0.45
SDC1-206ENST00000482879 ZNF778Q96MU6 729 aa12.22□□□□□ -0.45
SDC1-206ENST00000482879 NAT9Q9BTE0 207 aa12.22□□□□□ -0.45
SDC1-206ENST00000482879 C1QTNF2Q9BXJ5 285 aa12.22□□□□□ -0.45
SDC1-206ENST00000482879 SLC17A9Q9BYT1 436 aa12.22□□□□□ -0.45
SDC1-206ENST00000482879 PHACTR1Q9C0D0 580 aa12.22□□□□□ -0.45
SDC1-206ENST00000482879 NLE1Q9NVX2 485 aaPredicted RBP12.22□□□□□ -0.45
SDC1-206ENST00000482879 SLC2A6Q9UGQ3 507 aa12.22□□□□□ -0.45
SDC1-206ENST00000482879 ZC3H7BQ9UGR2 993 aaKnown RBP12.22□□□□□ -0.45
SDC1-206ENST00000482879 RIMKLBQ9ULI2 386 aa12.22□□□□□ -0.45
SDC1-206ENST00000482879 RGSL1A5PLK6 1076 aa12.21□□□□□ -0.45
SDC1-206ENST00000482879 SLC31A1O15431 190 aa12.21□□□□□ -0.45
SDC1-206ENST00000482879 RPP40O75818 363 aaKnown RBP12.21□□□□□ -0.45
SDC1-206ENST00000482879 PAK4O96013 591 aaPredicted RBP12.21□□□□□ -0.45
SDC1-206ENST00000482879 POLBP06746 335 aa12.21□□□□□ -0.45
SDC1-206ENST00000482879 FAM153BP0C7A2 387 aa12.21□□□□□ -0.45
SDC1-206ENST00000482879 BPIP17213 487 aa12.21□□□□□ -0.45
SDC1-206ENST00000482879 GM2AP17900 193 aa12.21□□□□□ -0.45
SDC1-206ENST00000482879 PGAM1P18669 254 aa12.21□□□□□ -0.45
SDC1-206ENST00000482879 HADHAP40939 763 aa12.21□□□□□ -0.45
SDC1-206ENST00000482879 CREB5Q02930 508 aa12.21□□□□□ -0.45
SDC1-206ENST00000482879 SRSF5Q13243 272 aaKnown RBP12.21□□□□□ -0.45
SDC1-206ENST00000482879 FGL2Q14314 439 aa12.21□□□□□ -0.45
SDC1-206ENST00000482879 FAM153CQ494X1 144 aa12.21□□□□□ -0.45
SDC1-206ENST00000482879 ANKRD20A4Q4UJ75 823 aa12.21□□□□□ -0.45
SDC1-206ENST00000482879 ALS2CLQ60I27 953 aa12.21□□□□□ -0.45
SDC1-206ENST00000482879 CYP2U1Q7Z449 544 aa12.21□□□□□ -0.45
SDC1-206ENST00000482879 PALM2Q8IXS6 379 aa12.21□□□□□ -0.45
SDC1-206ENST00000482879 RAVER1Q8IY67 606 aaKnown RBP12.21□□□□□ -0.45
SDC1-206ENST00000482879 NRSN1Q8IZ57 195 aa12.21□□□□□ -0.45
SDC1-206ENST00000482879 CADM4Q8NFZ8 388 aa12.21□□□□□ -0.45
SDC1-206ENST00000482879 GAB3Q8WWW8 586 aa12.21□□□□□ -0.45
SDC1-206ENST00000482879 ASB12Q8WXK4 309 aa12.21□□□□□ -0.45
SDC1-206ENST00000482879 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.21□□□□□ -0.45
SDC1-206ENST00000482879 NELL1Q92832 810 aa12.21□□□□□ -0.45
SDC1-206ENST00000482879 PEX13Q92968 403 aa12.21□□□□□ -0.45
SDC1-206ENST00000482879 ZNF669Q96BR6 464 aaPredicted RBP12.21□□□□□ -0.45
SDC1-206ENST00000482879 NUS1Q96E22 293 aa12.21□□□□□ -0.45
SDC1-206ENST00000482879 MFSD3Q96ES6 412 aa12.21□□□□□ -0.45
SDC1-206ENST00000482879 DTD2Q96FN9 168 aa12.21□□□□□ -0.45
SDC1-206ENST00000482879 CDKN2AIPNLQ96HQ2 116 aa12.21□□□□□ -0.45
SDC1-206ENST00000482879 C9orf72Q96LT7 481 aa12.21□□□□□ -0.45
SDC1-206ENST00000482879 WDR83Q9BRX9 315 aaKnown RBP12.21□□□□□ -0.45
SDC1-206ENST00000482879 TRIM56Q9BRZ2 755 aaKnown RBP12.21□□□□□ -0.45
SDC1-206ENST00000482879 LRFN3Q9BTN0 628 aa12.21□□□□□ -0.45
SDC1-206ENST00000482879 C1QTNF7Q9BXJ2 289 aa12.21□□□□□ -0.45
SDC1-206ENST00000482879 PCED1AQ9H1Q7 454 aa12.21□□□□□ -0.45
SDC1-206ENST00000482879 ABCG8Q9H221 673 aa12.21□□□□□ -0.45
SDC1-206ENST00000482879 FAM83DQ9H4H8 585 aa12.21□□□□□ -0.45
SDC1-206ENST00000482879 RAD18Q9NS91 495 aa12.21□□□□□ -0.45
SDC1-206ENST00000482879 ZSCAN32Q9NX65 697 aa12.21□□□□□ -0.45
SDC1-206ENST00000482879 KCTD5Q9NXV2 234 aa12.21□□□□□ -0.45
SDC1-206ENST00000482879 CD84Q9UIB8 345 aa12.21□□□□□ -0.45
SDC1-206ENST00000482879 FKBPLQ9UIM3 349 aa12.21□□□□□ -0.45
SDC1-206ENST00000482879 RAB21Q9UL25 225 aa12.21□□□□□ -0.45
SDC1-206ENST00000482879 FNDC3AQ9Y2H6 1198 aaKnown RBP12.21□□□□□ -0.45
SDC1-206ENST00000482879 RPS6KL1Q9Y6S9 549 aa12.21□□□□□ -0.45
SDC1-206ENST00000482879 FANCMQ8IYD8 2048 aa12.21□□□□□ -0.46
SDC1-206ENST00000482879 KNL1Q8NG31 2342 aa12.21□□□□□ -0.46
SDC1-206ENST00000482879 ZNF106Q9H2Y7 1883 aaKnown RBP12.21□□□□□ -0.46
SDC1-206ENST00000482879 PI4KAP42356 2102 aa12.2□□□□□ -0.46
SDC1-206ENST00000482879 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms