RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, human

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-222	ENST00000473373	CKMT1A	P12532	417 aa		11.52	□□□□□ -0.57
CPNE1-222	ENST00000473373	ZNF30	P17039	623 aa		11.52	□□□□□ -0.57
CPNE1-222	ENST00000473373	ATP5O	P48047	213 aa		11.52	□□□□□ -0.57
CPNE1-222	ENST00000473373	NR2C2	P49116	596 aa		11.52	□□□□□ -0.57
CPNE1-222	ENST00000473373	HADHB	P55084	474 aa	Known RBP	11.52	□□□□□ -0.57
CPNE1-222	ENST00000473373	KIAA1024L	P59773	190 aa		11.52	□□□□□ -0.57
CPNE1-222	ENST00000473373	KIF5A	Q12840	1032 aa		11.52	□□□□□ -0.57
CPNE1-222	ENST00000473373	ZBTB17	Q13105	803 aa		11.52	□□□□□ -0.57
CPNE1-222	ENST00000473373	GALNT3	Q14435	633 aa		11.52	□□□□□ -0.57
CPNE1-222	ENST00000473373	AGER	Q15109	404 aa		11.52	□□□□□ -0.57
CPNE1-222	ENST00000473373	SMAD1	Q15797	465 aa	Known RBP	11.52	□□□□□ -0.57
CPNE1-222	ENST00000473373	C6orf132	Q5T0Z8	1188 aa		11.52	□□□□□ -0.57
CPNE1-222	ENST00000473373	CRTC1	Q6UUV9	634 aa		11.52	□□□□□ -0.57
CPNE1-222	ENST00000473373		Q6ZVL8	140 aa		11.52	□□□□□ -0.57
CPNE1-222	ENST00000473373	HSD11B1L	Q7Z5J1	315 aa		11.52	□□□□□ -0.57
CPNE1-222	ENST00000473373	HEATR4	Q86WZ0	1026 aa		11.52	□□□□□ -0.57
CPNE1-222	ENST00000473373	GAS2L3	Q86XJ1	694 aa		11.52	□□□□□ -0.57
CPNE1-222	ENST00000473373	PDCD7	Q8N8D1	485 aa	Known RBP	11.52	□□□□□ -0.57
CPNE1-222	ENST00000473373	ACRBP	Q8NEB7	543 aa		11.52	□□□□□ -0.57
CPNE1-222	ENST00000473373	MDM1	Q8TC05	714 aa		11.52	□□□□□ -0.57
CPNE1-222	ENST00000473373	KIAA1524	Q8TCG1	905 aa		11.52	□□□□□ -0.57
CPNE1-222	ENST00000473373	NAT6	Q93015	286 aa		11.52	□□□□□ -0.57
CPNE1-222	ENST00000473373	FUBP1	Q96AE4	644 aa	Known RBP	11.52	□□□□□ -0.57
CPNE1-222	ENST00000473373	AP2M1	Q96CW1	435 aa		11.52	□□□□□ -0.57
CPNE1-222	ENST00000473373	NXPE2	Q96DL1	559 aa		11.52	□□□□□ -0.57
CPNE1-222	ENST00000473373	DTD2	Q96FN9	168 aa		11.52	□□□□□ -0.57
CPNE1-222	ENST00000473373	PDXP	Q96GD0	296 aa		11.52	□□□□□ -0.57
CPNE1-222	ENST00000473373	NSMCE3	Q96MG7	304 aa		11.52	□□□□□ -0.57
CPNE1-222	ENST00000473373	RBM15	Q96T37	977 aa	Known RBP eCLIP	11.52	□□□□□ -0.57	3e-7	■□□□□ 9.8
CPNE1-222	ENST00000473373	MLPH	Q9BV36	600 aa	Predicted RBP	11.52	□□□□□ -0.57
CPNE1-222	ENST00000473373	ZMYND15	Q9H091	742 aa		11.52	□□□□□ -0.57
CPNE1-222	ENST00000473373	CARS2	Q9HA77	564 aa	Known RBP	11.52	□□□□□ -0.57
CPNE1-222	ENST00000473373	MRPL40	Q9NQ50	206 aa	Known RBP	11.52	□□□□□ -0.57
CPNE1-222	ENST00000473373	PKD2L2	Q9NZM6	624 aa		11.52	□□□□□ -0.57
CPNE1-222	ENST00000473373	KLHL8	Q9P2G9	620 aa	Predicted RBP	11.52	□□□□□ -0.57
CPNE1-222	ENST00000473373	IMPACT	Q9P2X3	320 aa		11.52	□□□□□ -0.57
CPNE1-222	ENST00000473373	SALL4	Q9UJQ4	1053 aa		11.52	□□□□□ -0.57
CPNE1-222	ENST00000473373	FASN	P49327	2511 aa	Known RBP	11.52	□□□□□ -0.57
CPNE1-222	ENST00000473373	ADAMTS20	P59510	1910 aa		11.51	□□□□□ -0.57
CPNE1-222	ENST00000473373		A0A0U1RQS6	177 aa		11.51	□□□□□ -0.57
CPNE1-222	ENST00000473373	PRSS38	A1L453	326 aa		11.51	□□□□□ -0.57
CPNE1-222	ENST00000473373	TRABD2B	A6NFA1	517 aa		11.51	□□□□□ -0.57
CPNE1-222	ENST00000473373	CAPN8	A6NHC0	703 aa		11.51	□□□□□ -0.57
CPNE1-222	ENST00000473373	C3orf70	A6NLC5	250 aa	Predicted RBP	11.51	□□□□□ -0.57
CPNE1-222	ENST00000473373		B4DGG1	531 aa		11.51	□□□□□ -0.57
CPNE1-222	ENST00000473373	LMO7DN	F2Z398	122 aa		11.51	□□□□□ -0.57
CPNE1-222	ENST00000473373		F5H423	210 aa	Predicted RBP	11.51	□□□□□ -0.57
CPNE1-222	ENST00000473373	YY2	O15391	372 aa		11.51	□□□□□ -0.57
CPNE1-222	ENST00000473373	MTSS1	O43312	755 aa		11.51	□□□□□ -0.57
CPNE1-222	ENST00000473373	GCAT	O75600	419 aa		11.51	□□□□□ -0.57
CPNE1-222	ENST00000473373	PYGL	P06737	847 aa		11.51	□□□□□ -0.57
CPNE1-222	ENST00000473373	LHCGR	P22888	699 aa		11.51	□□□□□ -0.57
CPNE1-222	ENST00000473373	CDKN2B	P42772	138 aa		11.51	□□□□□ -0.57
CPNE1-222	ENST00000473373	GNPDA1	P46926	289 aa		11.51	□□□□□ -0.57
CPNE1-222	ENST00000473373	VAV2	P52735	878 aa		11.51	□□□□□ -0.57
CPNE1-222	ENST00000473373	RPL26	P61254	145 aa	Known RBP	11.51	□□□□□ -0.57
CPNE1-222	ENST00000473373	IFI35	P80217	286 aa	Predicted RBP	11.51	□□□□□ -0.57
CPNE1-222	ENST00000473373	CYP4F3	Q08477	520 aa		11.51	□□□□□ -0.57
CPNE1-222	ENST00000473373	NIPAL4	Q0D2K0	466 aa		11.51	□□□□□ -0.57
CPNE1-222	ENST00000473373	TARDBP	Q13148	414 aa	Known RBP eCLIP	11.51	□□□□□ -0.57
CPNE1-222	ENST00000473373	TCEAL1	Q15170	157 aa		11.51	□□□□□ -0.57
CPNE1-222	ENST00000473373	PTPRR	Q15256	657 aa		11.51	□□□□□ -0.57
CPNE1-222	ENST00000473373	GUSBP11	Q6P575	273 aa		11.51	□□□□□ -0.57
CPNE1-222	ENST00000473373	KATNAL2	Q8IYT4	538 aa		11.51	□□□□□ -0.57
CPNE1-222	ENST00000473373	FAM181A	Q8N9Y4	354 aa		11.51	□□□□□ -0.57
CPNE1-222	ENST00000473373	FAM46D	Q8NEK8	389 aa		11.51	□□□□□ -0.57
CPNE1-222	ENST00000473373	EXD1	Q8NHP7	514 aa		11.51	□□□□□ -0.57
CPNE1-222	ENST00000473373	PIH1D2	Q8WWB5	315 aa		11.51	□□□□□ -0.57
CPNE1-222	ENST00000473373	FATE1	Q969F0	183 aa		11.51	□□□□□ -0.57
CPNE1-222	ENST00000473373	TBATA	Q96M53	351 aa		11.51	□□□□□ -0.57
CPNE1-222	ENST00000473373	COQ10A	Q96MF6	247 aa		11.51	□□□□□ -0.57
CPNE1-222	ENST00000473373	DEPDC7	Q96QD5	511 aa		11.51	□□□□□ -0.57
CPNE1-222	ENST00000473373	HEMGN	Q9BXL5	484 aa		11.51	□□□□□ -0.57
CPNE1-222	ENST00000473373	GPR63	Q9BZJ6	419 aa		11.51	□□□□□ -0.57
CPNE1-222	ENST00000473373	DPEP2	Q9H4A9	486 aa		11.51	□□□□□ -0.57
CPNE1-222	ENST00000473373	SAE1	Q9UBE0	346 aa	Predicted RBP	11.51	□□□□□ -0.57
CPNE1-222	ENST00000473373	AMFR	Q9UKV5	643 aa		11.51	□□□□□ -0.57
CPNE1-222	ENST00000473373	RPL26L1	Q9UNX3	145 aa	Known RBP	11.51	□□□□□ -0.57
CPNE1-222	ENST00000473373	RAX	Q9Y2V3	346 aa		11.51	□□□□□ -0.57
CPNE1-222	ENST00000473373	KIF26B	Q2KJY2	2108 aa		11.5	□□□□□ -0.57
CPNE1-222	ENST00000473373	hCG_1818297	A0A087WSY0	165 aa		11.5	□□□□□ -0.57
CPNE1-222	ENST00000473373	TMEM202	A6NGA9	273 aa		11.5	□□□□□ -0.57
CPNE1-222	ENST00000473373	INPP4B	O15327	924 aa		11.5	□□□□□ -0.57
CPNE1-222	ENST00000473373	NRDC	O43847	1150 aa		11.5	□□□□□ -0.57
CPNE1-222	ENST00000473373	PMPCB	O75439	489 aa		11.5	□□□□□ -0.57
CPNE1-222	ENST00000473373	STK10	O94804	968 aa	Known RBP	11.5	□□□□□ -0.57
CPNE1-222	ENST00000473373	DKK1	O94907	266 aa		11.5	□□□□□ -0.57
CPNE1-222	ENST00000473373	ZIC2	O95409	532 aa	Predicted RBP	11.5	□□□□□ -0.57
CPNE1-222	ENST00000473373	CLDN7	O95471	211 aa		11.5	□□□□□ -0.57
CPNE1-222	ENST00000473373	MT-CO3	P00414	261 aa		11.5	□□□□□ -0.57
CPNE1-222	ENST00000473373	GP1BA	P07359	652 aa		11.5	□□□□□ -0.57
CPNE1-222	ENST00000473373	CELA2B	P08218	269 aa	Predicted RBP	11.5	□□□□□ -0.57
CPNE1-222	ENST00000473373	CDC25B	P30305	580 aa		11.5	□□□□□ -0.57
CPNE1-222	ENST00000473373	MARCKSL1	P49006	195 aa		11.5	□□□□□ -0.57
CPNE1-222	ENST00000473373	CDK3	Q00526	305 aa		11.5	□□□□□ -0.57
CPNE1-222	ENST00000473373	INSM1	Q01101	510 aa	Predicted RBP	11.5	□□□□□ -0.57
CPNE1-222	ENST00000473373	ILF3	Q12906	894 aa	Known RBP eCLIP	11.5	□□□□□ -0.57
CPNE1-222	ENST00000473373	SPIDR	Q14159	915 aa		11.5	□□□□□ -0.57
CPNE1-222	ENST00000473373	ALG1L	Q6GMV1	187 aa		11.5	□□□□□ -0.57
CPNE1-222	ENST00000473373	RAD9B	Q6WBX8	426 aa		11.5	□□□□□ -0.57

Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms