RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 CREMQ03060 361 aa13.31□□□□□ -0.28
COL6A3-209ENST00000472056 ADIGQ0VDE8 80 aa13.31□□□□□ -0.28
COL6A3-209ENST00000472056 RNF19BQ6ZMZ0 732 aa13.31□□□□□ -0.28
COL6A3-209ENST00000472056 BEND5Q7L4P6 421 aa13.31□□□□□ -0.28
COL6A3-209ENST00000472056 RASGEF1CQ8N431 466 aa13.31□□□□□ -0.28
COL6A3-209ENST00000472056 NATD1Q8N6N6 113 aa13.31□□□□□ -0.28
COL6A3-209ENST00000472056 DNAJB3Q8WWF6 145 aa13.31□□□□□ -0.28
COL6A3-209ENST00000472056 TBCDQ9BTW9 1192 aa13.31□□□□□ -0.28
COL6A3-209ENST00000472056 MTMR10Q9NXD2 777 aa13.31□□□□□ -0.28
COL6A3-209ENST00000472056 RGL2O15211 777 aa13.31□□□□□ -0.28
COL6A3-209ENST00000472056 SCELO95171 688 aa13.31□□□□□ -0.28
COL6A3-209ENST00000472056 MAMLD1Q13495 774 aa13.31□□□□□ -0.28
COL6A3-209ENST00000472056 HTRA1Q92743 480 aa13.31□□□□□ -0.28
COL6A3-209ENST00000472056 UNC93B1Q9H1C4 597 aa13.31□□□□□ -0.28
COL6A3-209ENST00000472056 TKTL1P51854 596 aa13.31□□□□□ -0.28
COL6A3-209ENST00000472056 CPVLQ9H3G5 476 aa13.31□□□□□ -0.28
COL6A3-209ENST00000472056 HIPK3Q9H422 1215 aa13.31□□□□□ -0.28
COL6A3-209ENST00000472056 E7ENX8 843 aa13.31□□□□□ -0.28
COL6A3-209ENST00000472056 SLC37A4O43826 429 aa13.31□□□□□ -0.28
COL6A3-209ENST00000472056 DNAJB1P25685 340 aa13.31□□□□□ -0.28
COL6A3-209ENST00000472056 RPS9P46781 194 aaKnown RBP13.31□□□□□ -0.28
COL6A3-209ENST00000472056 PABPC1LQ4VXU2 614 aaKnown RBP13.31□□□□□ -0.28
COL6A3-209ENST00000472056 FAXDC2Q96IV6 333 aa13.31□□□□□ -0.28
COL6A3-209ENST00000472056 TSPAN4O14817 238 aa13.3□□□□□ -0.28
COL6A3-209ENST00000472056 SCNN1BP51168 640 aa13.3□□□□□ -0.28
COL6A3-209ENST00000472056 PLEKHG4Q58EX7 1191 aa13.3□□□□□ -0.28
COL6A3-209ENST00000472056 NIPAL1Q6NVV3 410 aa13.3□□□□□ -0.28
COL6A3-209ENST00000472056 TXNRD3Q86VQ6 643 aa13.3□□□□□ -0.28
COL6A3-209ENST00000472056 TAS1R2Q8TE23 839 aa13.3□□□□□ -0.28
COL6A3-209ENST00000472056 RC3H2Q9HBD1 1191 aaKnown RBP13.3□□□□□ -0.28
COL6A3-209ENST00000472056 IGSF9Q9P2J2 1179 aa13.3□□□□□ -0.28
COL6A3-209ENST00000472056 VWDEQ8N2E2 1590 aa13.3□□□□□ -0.28
COL6A3-209ENST00000472056 PSMD11O00231 422 aa13.3□□□□□ -0.28
COL6A3-209ENST00000472056 RLN2P04090 185 aa13.3□□□□□ -0.28
COL6A3-209ENST00000472056 NR2F1P10589 423 aa13.3□□□□□ -0.28
COL6A3-209ENST00000472056 HGFP14210 728 aa13.3□□□□□ -0.28
COL6A3-209ENST00000472056 ALDH4A1P30038 563 aa13.3□□□□□ -0.28
COL6A3-209ENST00000472056 RBFAQ8N0V3 343 aa13.3□□□□□ -0.28
COL6A3-209ENST00000472056 GPRC5AQ8NFJ5 357 aa13.3□□□□□ -0.28
COL6A3-209ENST00000472056 THG1LQ9NWX6 298 aaKnown RBP13.3□□□□□ -0.28
COL6A3-209ENST00000472056 FAM50BQ9Y247 325 aa13.3□□□□□ -0.28
COL6A3-209ENST00000472056 SPATA31D1Q6ZQQ2 1576 aa13.3□□□□□ -0.28
COL6A3-209ENST00000472056 RIIAD1A6NNX1 92 aa13.3□□□□□ -0.28
COL6A3-209ENST00000472056 H7C2Y5 167 aa13.3□□□□□ -0.28
COL6A3-209ENST00000472056 SLC9A3R1O14745 358 aaPredicted RBP13.3□□□□□ -0.28
COL6A3-209ENST00000472056 C8BP07358 591 aa13.3□□□□□ -0.28
COL6A3-209ENST00000472056 SRPRAP08240 638 aaKnown RBP13.3□□□□□ -0.28
COL6A3-209ENST00000472056 MMP10P09238 476 aa13.3□□□□□ -0.28
COL6A3-209ENST00000472056 MIPP30301 263 aa13.3□□□□□ -0.28
COL6A3-209ENST00000472056 ECT2LQ008S8 904 aa13.3□□□□□ -0.28
COL6A3-209ENST00000472056 PHF13Q86YI8 300 aaPredicted RBP13.3□□□□□ -0.28
COL6A3-209ENST00000472056 ANKRD52Q8NB46 1076 aa13.3□□□□□ -0.28
COL6A3-209ENST00000472056 KAT8Q9H7Z6 458 aaKnown RBP13.3□□□□□ -0.28
COL6A3-209ENST00000472056 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP13.3□□□□□ -0.28
COL6A3-209ENST00000472056 ACSL4O60488 711 aa13.3□□□□□ -0.28
COL6A3-209ENST00000472056 VMACQ2NL98 169 aa13.3□□□□□ -0.28
COL6A3-209ENST00000472056 ZBTB8BQ8NAP8 495 aaPredicted RBP13.3□□□□□ -0.28
COL6A3-209ENST00000472056 TMEM94Q12767 1356 aa13.3□□□□□ -0.28
COL6A3-209ENST00000472056 ZBTB11O95625 1053 aaPredicted RBP13.3□□□□□ -0.28
COL6A3-209ENST00000472056 MCCD1P59942 119 aaPredicted RBP13.3□□□□□ -0.28
COL6A3-209ENST00000472056 SLC25A3Q00325 362 aa13.3□□□□□ -0.28
COL6A3-209ENST00000472056 ITGA7Q13683 1181 aa13.3□□□□□ -0.28
COL6A3-209ENST00000472056 ACOX1Q15067 660 aa13.3□□□□□ -0.28
COL6A3-209ENST00000472056 RNF180Q86T96 592 aa13.3□□□□□ -0.28
COL6A3-209ENST00000472056 ALG2Q9H553 416 aa13.3□□□□□ -0.28
COL6A3-209ENST00000472056 ADGRE2Q9UHX3 823 aa13.3□□□□□ -0.28
COL6A3-209ENST00000472056 COG5Q9UP83 839 aa13.3□□□□□ -0.28
COL6A3-209ENST00000472056 TRAF6Q9Y4K3 522 aa13.3□□□□□ -0.28
COL6A3-209ENST00000472056 MARSP56192 900 aaKnown RBP13.3□□□□□ -0.28
COL6A3-209ENST00000472056 CBLBQ13191 982 aa13.3□□□□□ -0.28
COL6A3-209ENST00000472056 RHEBQ15382 184 aa13.3□□□□□ -0.28
COL6A3-209ENST00000472056 ZBED5Q49AG3 693 aa13.3□□□□□ -0.28
COL6A3-209ENST00000472056 RTL4Q6ZR62 310 aa13.3□□□□□ -0.28
COL6A3-209ENST00000472056 LAPTM4BQ86VI4 370 aa13.3□□□□□ -0.28
COL6A3-209ENST00000472056 DNAJB14Q8TBM8 379 aa13.3□□□□□ -0.28
COL6A3-209ENST00000472056 ACAT2Q9BWD1 397 aa13.3□□□□□ -0.28
COL6A3-209ENST00000472056 RANBP3Q9H6Z4 567 aaPredicted RBP13.3□□□□□ -0.28
COL6A3-209ENST00000472056 KNTC1P50748 2209 aa13.3□□□□□ -0.28
COL6A3-209ENST00000472056 A0A1W2PQ67 120 aa13.3□□□□□ -0.28
COL6A3-209ENST00000472056 TCEA3O75764 348 aa13.3□□□□□ -0.28
COL6A3-209ENST00000472056 MAB21L1Q13394 359 aa13.3□□□□□ -0.28
COL6A3-209ENST00000472056 FBXO33Q7Z6M2 555 aa13.3□□□□□ -0.28
COL6A3-209ENST00000472056 FAM13CQ8NE31 585 aa13.3□□□□□ -0.28
COL6A3-209ENST00000472056 ZNRF3Q9ULT6 936 aa13.3□□□□□ -0.28
COL6A3-209ENST00000472056 MRPS7Q9Y2R9 242 aaKnown RBP13.3□□□□□ -0.28
COL6A3-209ENST00000472056 SALL1Q9NSC2 1324 aa13.29□□□□□ -0.28
COL6A3-209ENST00000472056 DPPA5A6NC42 116 aa13.29□□□□□ -0.28
COL6A3-209ENST00000472056 IPO13O94829 963 aaKnown RBP13.29□□□□□ -0.28
COL6A3-209ENST00000472056 OR1G1P47890 313 aa13.29□□□□□ -0.28
COL6A3-209ENST00000472056 PTP4A2Q12974 167 aa13.29□□□□□ -0.28
COL6A3-209ENST00000472056 FAM131BQ86XD5 332 aa13.29□□□□□ -0.28
COL6A3-209ENST00000472056 BEND7Q8N7W2 519 aaPredicted RBP13.29□□□□□ -0.28
COL6A3-209ENST00000472056 KCNIP3Q9Y2W7 256 aa13.29□□□□□ -0.28
COL6A3-209ENST00000472056 MICAL2O94851 1124 aa13.29□□□□□ -0.28
COL6A3-209ENST00000472056 ARCN1P48444 511 aaKnown RBP13.29□□□□□ -0.28
COL6A3-209ENST00000472056 SLC7A2P52569 658 aa13.29□□□□□ -0.28
COL6A3-209ENST00000472056 SLC12A3P55017 1021 aa13.29□□□□□ -0.28
COL6A3-209ENST00000472056 MTM1Q13496 603 aa13.29□□□□□ -0.28
COL6A3-209ENST00000472056 CLP1Q92989 425 aaKnown RBP13.29□□□□□ -0.28
COL6A3-209ENST00000472056 SUCOQ9UBS9 1254 aaKnown RBP13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms