RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 FUCA1P04066 466 aa16.28■□□□□ 0.2
COL9A3-208ENST00000469802 RPLP0P05388 317 aaKnown RBP16.28■□□□□ 0.2
COL9A3-208ENST00000469802 CEACAM5P06731 702 aa16.28■□□□□ 0.2
COL9A3-208ENST00000469802 PNLIPP16233 465 aa16.28■□□□□ 0.2
COL9A3-208ENST00000469802 GLB1P16278 677 aa16.28■□□□□ 0.2
COL9A3-208ENST00000469802 CTPS1P17812 591 aa16.28■□□□□ 0.2
COL9A3-208ENST00000469802 DSC2Q02487 901 aa16.28■□□□□ 0.2
COL9A3-208ENST00000469802 GBE1Q04446 702 aa16.28■□□□□ 0.2
COL9A3-208ENST00000469802 ARHGEF7Q14155 803 aa16.28■□□□□ 0.2
COL9A3-208ENST00000469802 HLTFQ14527 1009 aaKnown RBP eCLIP16.28■□□□□ 0.2
COL9A3-208ENST00000469802 C14orf28Q4W4Y0 310 aa16.28■□□□□ 0.2
COL9A3-208ENST00000469802 LRRC66Q68CR7 880 aa16.28■□□□□ 0.2
COL9A3-208ENST00000469802 DENND2CQ68D51 928 aa16.28■□□□□ 0.2
COL9A3-208ENST00000469802 B3GNT8Q7Z7M8 397 aa16.28■□□□□ 0.2
COL9A3-208ENST00000469802 C17orf82Q86X59 251 aaPredicted RBP16.28■□□□□ 0.2
COL9A3-208ENST00000469802 NRROSQ86YC3 692 aa16.28■□□□□ 0.2
COL9A3-208ENST00000469802 MAP7D3Q8IWC1 876 aa16.28■□□□□ 0.2
COL9A3-208ENST00000469802 KCTD6Q8NC69 237 aa16.28■□□□□ 0.2
COL9A3-208ENST00000469802 OR8K1Q8NGG5 319 aa16.28■□□□□ 0.2
COL9A3-208ENST00000469802 WDR36Q8NI36 951 aaKnown RBP16.28■□□□□ 0.2
COL9A3-208ENST00000469802 ARRDC2Q8TBH0 407 aa16.28■□□□□ 0.2
COL9A3-208ENST00000469802 GPBAR1Q8TDU6 330 aa16.28■□□□□ 0.2
COL9A3-208ENST00000469802 PTCD2Q8WV60 388 aaKnown RBP16.28■□□□□ 0.2
COL9A3-208ENST00000469802 HDAC11Q96DB2 347 aa16.28■□□□□ 0.2
COL9A3-208ENST00000469802 SMIM14Q96QK8 99 aa16.28■□□□□ 0.2
COL9A3-208ENST00000469802 GFM1Q96RP9 751 aaKnown RBP16.28■□□□□ 0.2
COL9A3-208ENST00000469802 SYNDIG1Q9H7V2 258 aa16.28■□□□□ 0.2
COL9A3-208ENST00000469802 SLC17A4Q9Y2C5 497 aa16.28■□□□□ 0.2
COL9A3-208ENST00000469802 CAPN8A6NHC0 703 aa16.27■□□□□ 0.2
COL9A3-208ENST00000469802 ZNF487B1APH4 448 aa16.27■□□□□ 0.2
COL9A3-208ENST00000469802 CBFA2T2O43439 604 aa16.27■□□□□ 0.2
COL9A3-208ENST00000469802 PRLP01236 227 aa16.27■□□□□ 0.2
COL9A3-208ENST00000469802 HLA-DQB2P05538 268 aa16.27■□□□□ 0.2
COL9A3-208ENST00000469802 CCNB1P14635 433 aa16.27■□□□□ 0.2
COL9A3-208ENST00000469802 ZNF30P17039 623 aa16.27■□□□□ 0.2
COL9A3-208ENST00000469802 CES1P23141 567 aa16.27■□□□□ 0.2
COL9A3-208ENST00000469802 CCKBRP32239 447 aa16.27■□□□□ 0.2
COL9A3-208ENST00000469802 CCL7P80098 99 aa16.27■□□□□ 0.2
COL9A3-208ENST00000469802 SLC10A2Q12908 348 aaPredicted RBP16.27■□□□□ 0.2
COL9A3-208ENST00000469802 RAET1GQ6H3X3 334 aa16.27■□□□□ 0.2
COL9A3-208ENST00000469802 RFLNAQ6ZTI6 216 aa16.27■□□□□ 0.2
COL9A3-208ENST00000469802 ZNF765Q7L2R6 523 aa16.27■□□□□ 0.2
COL9A3-208ENST00000469802 SPRED1Q7Z699 444 aa16.27■□□□□ 0.2
COL9A3-208ENST00000469802 VSIG1Q86XK7 387 aa16.27■□□□□ 0.2
COL9A3-208ENST00000469802 CCNJLQ8IV13 435 aa16.27■□□□□ 0.2
COL9A3-208ENST00000469802 VSTM4Q8IW00 320 aa16.27■□□□□ 0.2
COL9A3-208ENST00000469802 FAM46DQ8NEK8 389 aa16.27■□□□□ 0.2
COL9A3-208ENST00000469802 KCNE4Q8WWG9 221 aa16.27■□□□□ 0.2
COL9A3-208ENST00000469802 SCARF2Q96GP6 870 aaPredicted RBP16.27■□□□□ 0.2
COL9A3-208ENST00000469802 LRRN3Q9H3W5 708 aa16.27■□□□□ 0.2
COL9A3-208ENST00000469802 CARS2Q9HA77 564 aaKnown RBP16.27■□□□□ 0.2
COL9A3-208ENST00000469802 ABHD10Q9NUJ1 306 aa16.27■□□□□ 0.2
COL9A3-208ENST00000469802 TRNAU1APQ9NX07 287 aaKnown RBP16.27■□□□□ 0.2
COL9A3-208ENST00000469802 DTLQ9NZJ0 730 aa16.27■□□□□ 0.2
COL9A3-208ENST00000469802 ST14Q9Y5Y6 855 aa16.27■□□□□ 0.2
COL9A3-208ENST00000469802 ATMQ13315 3056 aa16.27■□□□□ 0.19
COL9A3-208ENST00000469802 A0A0U1RQS6 177 aa16.26■□□□□ 0.19
COL9A3-208ENST00000469802 B4DGG1 531 aa16.26■□□□□ 0.19
COL9A3-208ENST00000469802 NUDT21O43809 227 aaKnown RBP16.26■□□□□ 0.19
COL9A3-208ENST00000469802 KALRNO60229 2985 aa16.26■□□□□ 0.19
COL9A3-208ENST00000469802 MTA2O94776 668 aa16.26■□□□□ 0.19
COL9A3-208ENST00000469802 IVLP07476 585 aa16.26■□□□□ 0.19
COL9A3-208ENST00000469802 ITGA2BP08514 1039 aa16.26■□□□□ 0.19
COL9A3-208ENST00000469802 MX2P20592 715 aa16.26■□□□□ 0.19
COL9A3-208ENST00000469802 RBMS1P29558 406 aaKnown RBP16.26■□□□□ 0.19
COL9A3-208ENST00000469802 STC1P52823 247 aa16.26■□□□□ 0.19
COL9A3-208ENST00000469802 PTSQ03393 145 aa16.26■□□□□ 0.19
COL9A3-208ENST00000469802 PPIDQ08752 370 aaKnown RBP16.26■□□□□ 0.19
COL9A3-208ENST00000469802 NIPAL4Q0D2K0 466 aa16.26■□□□□ 0.19
COL9A3-208ENST00000469802 EIF3IQ13347 325 aaKnown RBP16.26■□□□□ 0.19
COL9A3-208ENST00000469802 SKOR2Q2VWA4 1001 aaPredicted RBP16.26■□□□□ 0.19
COL9A3-208ENST00000469802 ADAMTSL4Q6UY14 1074 aa16.26■□□□□ 0.19
COL9A3-208ENST00000469802 GPR155Q7Z3F1 870 aa16.26■□□□□ 0.19
COL9A3-208ENST00000469802 ZNF438Q7Z4V0 828 aa16.26■□□□□ 0.19
COL9A3-208ENST00000469802 NLRP8Q86W28 1048 aa16.26■□□□□ 0.19
COL9A3-208ENST00000469802 RAVER1Q8IY67 606 aaKnown RBP16.26■□□□□ 0.19
COL9A3-208ENST00000469802 PLD5Q8N7P1 536 aa16.26■□□□□ 0.19
COL9A3-208ENST00000469802 RAPGEF5Q92565 580 aa16.26■□□□□ 0.19
COL9A3-208ENST00000469802 NAF1Q96HR8 494 aaKnown RBP16.26■□□□□ 0.19
COL9A3-208ENST00000469802 RNF157Q96PX1 679 aa16.26■□□□□ 0.19
COL9A3-208ENST00000469802 LYSMD1Q96S90 227 aa16.26■□□□□ 0.19
COL9A3-208ENST00000469802 GSDMCQ9BYG8 508 aa16.26■□□□□ 0.19
COL9A3-208ENST00000469802 DPH1Q9BZG8 443 aa16.26■□□□□ 0.19
COL9A3-208ENST00000469802 ABCG8Q9H221 673 aa16.26■□□□□ 0.19
COL9A3-208ENST00000469802 RBM22Q9NW64 420 aaKnown RBP eCLIP16.26■□□□□ 0.19
COL9A3-208ENST00000469802 SUFUQ9UMX1 484 aa16.26■□□□□ 0.19
COL9A3-208ENST00000469802 RNF215Q9Y6U7 377 aa16.26■□□□□ 0.19
COL9A3-208ENST00000469802 TEX51A0A1B0GUA7 166 aa16.25■□□□□ 0.19
COL9A3-208ENST00000469802 C3orf70A6NLC5 250 aaPredicted RBP16.25■□□□□ 0.19
COL9A3-208ENST00000469802 TMX2-CTNND1H3BSU7 103 aa16.25■□□□□ 0.19
COL9A3-208ENST00000469802 ATXN7O15265 892 aaPredicted RBP16.25■□□□□ 0.19
COL9A3-208ENST00000469802 MFAP3LO75121 409 aa16.25■□□□□ 0.19
COL9A3-208ENST00000469802 KRT10P13645 584 aa16.25■□□□□ 0.19
COL9A3-208ENST00000469802 KDELR1P24390 212 aa16.25■□□□□ 0.19
COL9A3-208ENST00000469802 UCNP55089 124 aa16.25■□□□□ 0.19
COL9A3-208ENST00000469802 RPL26P61254 145 aaKnown RBP16.25■□□□□ 0.19
COL9A3-208ENST00000469802 ITKQ08881 620 aa16.25■□□□□ 0.19
COL9A3-208ENST00000469802 ILF3Q12906 894 aaKnown RBP eCLIP16.25■□□□□ 0.19
COL9A3-208ENST00000469802 NR1D2Q14995 579 aa16.25■□□□□ 0.19
COL9A3-208ENST00000469802 NDUFAF2Q8N183 169 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms