RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 TLK2Q86UE8 772 aa4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 NKAIN4Q8IVV8 208 aa4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 POMGNT2Q8NAT1 580 aa4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 POGLUT1Q8NBL1 392 aa4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 OR6J1Q8NGC5 347 aa4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 GANCQ8TET4 914 aa4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 FER1L6-AS2Q96M78 137 aa4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 REEP2Q9BRK0 252 aa4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 THAP7Q9BT49 309 aaPredicted RBP4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 APOL6Q9BWW8 343 aa4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 STRA6Q9BX79 667 aa4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 EIF2AQ9BY44 585 aaKnown RBP4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 ST6GALNAC4Q9H4F1 302 aa4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 HCFC1R1Q9NWW0 138 aa4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 TFCP2L1Q9NZI6 479 aa4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 NDUFAF4Q9P032 175 aa4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 GABRQQ9UN88 632 aa4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 NAALAD2Q9Y3Q0 740 aa4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 SNX14Q9Y5W7 946 aa4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 SNX9Q9Y5X1 595 aa4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 GMEB1Q9Y692 573 aa4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 CLCA3PQ9Y6N3 262 aa4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 KIF7Q2M1P5 1343 aa4.93□□□□□ -1.62
CCDC88A-210ENST00000468534 RUSC2Q8N2Y8 1516 aa4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 TNIKQ9UKE5 1360 aa4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 A0A1W2PQ09 198 aa4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 KPNA7A9QM74 516 aa4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 SOCS2O14508 198 aa4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 DSCR3O14972 297 aa4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 ASNA1O43681 348 aa4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 CACNG3O60359 315 aa4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 CYTIPO60759 359 aa4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 ERLIN1O75477 346 aa4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 GCATO75600 419 aa4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 TJP3O95049 919 aa4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 SUPT20HL2P0C7V6 817 aa4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 TXNP10599 105 aaKnown RBP4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 TKTP29401 623 aaKnown RBP4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 SLC7A1P30825 629 aa4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 TAGLN2P37802 199 aaKnown RBP4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 GARSP41250 739 aaKnown RBP4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 HAAOP46952 286 aa4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 PITPNBP48739 271 aa4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 AARSP49588 968 aaKnown RBP eCLIP4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 HSD17B4P51659 736 aa4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 RARSP54136 660 aaKnown RBP4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 CASP9P55211 416 aa4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 POLE2P56282 527 aa4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 CARD18P57730 90 aa4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 EIF4A1P60842 406 aaKnown RBP4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 RPS3AP61247 264 aaKnown RBP4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 HNRNPDQ14103 355 aaKnown RBP4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 RCN2Q14257 317 aa4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 FGL2Q14314 439 aa4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 PDIA5Q14554 519 aa4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 PDK1Q15118 436 aa4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 MYLK3Q32MK0 819 aa4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 MGAT5BQ3V5L5 792 aa4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 ZNF628Q5EBL2 1059 aa4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 ZRANB3Q5FWF4 1079 aa4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 OR7E24Q6IFN5 339 aa4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 FBXO38Q6PIJ6 1188 aa4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 SEPT14Q6ZU15 432 aa4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 CHST3Q7LGC8 479 aa4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 TAF8Q7Z7C8 310 aa4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 MRPL10Q7Z7H8 261 aaKnown RBP4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 MICU3Q86XE3 530 aa4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 CD302Q8IX05 232 aa4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 MCEMP1Q8IX19 187 aa4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 IZUMO1Q8IYV9 350 aa4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 ABRAQ8N0Z2 381 aa4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 SLC15A4Q8N697 577 aa4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 FAM133AQ8N9E0 248 aa4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 XXYLT1Q8NBI6 393 aa4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 OR52M1Q8NGK5 317 aa4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 OR1N1Q8NGS0 311 aa4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 ZNF671Q8TAW3 534 aa4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 MIPOL1Q8TD10 442 aa4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 SLC22A17Q8WUG5 538 aa4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 IP6K1Q92551 441 aa4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 PRCCQ92733 491 aaPredicted RBP4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 ALG14Q96F25 216 aa4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 PRR25Q96S07 402 aa4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 PKP4Q99569 1192 aa4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 SIKE1Q9BRV8 207 aa4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 OSBPL10Q9BXB5 764 aa4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 TRIM2Q9C040 744 aa4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 FTOQ9C0B1 505 aaKnown RBP eCLIP4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 PABPC3Q9H361 631 aaKnown RBP4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 STN1Q9H668 368 aaKnown RBP4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 NECTIN3Q9NQS3 549 aa4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 MRPL15Q9P015 296 aaKnown RBP4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 MARCH4Q9P2E8 410 aaPredicted RBP4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 HDAC6Q9UBN7 1215 aa4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 MTRF1LQ9UGC7 380 aaKnown RBP4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 PRELID1Q9Y255 219 aa4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 RPH3AQ9Y2J0 694 aaPredicted RBP4.92□□□□□ -1.62
CCDC88A-210ENST00000468534 URADA6NGE7 173 aa4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 A8MV72 311 aaPredicted RBP4.91□□□□□ -1.62
CCDC88A-210ENST00000468534 FOXO6A8MYZ6 492 aa4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms