RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 CCNB1P14635 433 aa17.5■□□□□ 0.39
COL7A1-206ENST00000466591 CR2P20023 1033 aa17.5■□□□□ 0.39
COL7A1-206ENST00000466591 MX2P20592 715 aa17.5■□□□□ 0.39
COL7A1-206ENST00000466591 CES1P23141 567 aa17.5■□□□□ 0.39
COL7A1-206ENST00000466591 ALDH4A1P30038 563 aa17.5■□□□□ 0.39
COL7A1-206ENST00000466591 TRIM23P36406 574 aa17.5■□□□□ 0.39
COL7A1-206ENST00000466591 GARSP41250 739 aaKnown RBP17.5■□□□□ 0.39
COL7A1-206ENST00000466591 CDK3Q00526 305 aa17.5■□□□□ 0.39
COL7A1-206ENST00000466591 RHDQ02161 417 aa17.5■□□□□ 0.39
COL7A1-206ENST00000466591 PDK2Q15119 407 aa17.5■□□□□ 0.39
COL7A1-206ENST00000466591 AMZ1Q400G9 498 aa17.5■□□□□ 0.39
COL7A1-206ENST00000466591 CCDC81Q6ZN84 652 aa17.5■□□□□ 0.39
COL7A1-206ENST00000466591 Q6ZVL8 140 aa17.5■□□□□ 0.39
COL7A1-206ENST00000466591 GPR156Q8NFN8 814 aa17.5■□□□□ 0.39
COL7A1-206ENST00000466591 AP2M1Q96CW1 435 aa17.5■□□□□ 0.39
COL7A1-206ENST00000466591 CMKLR1Q99788 373 aa17.5■□□□□ 0.39
COL7A1-206ENST00000466591 ZNF670Q9BS34 389 aa17.5■□□□□ 0.39
COL7A1-206ENST00000466591 MAK16Q9BXY0 300 aaKnown RBP17.5■□□□□ 0.39
COL7A1-206ENST00000466591 RBM22Q9NW64 420 aaKnown RBP eCLIP17.5■□□□□ 0.39
COL7A1-206ENST00000466591 UVRAGQ9P2Y5 699 aa17.5■□□□□ 0.39
COL7A1-206ENST00000466591 RABGEF1Q9UJ41 708 aa17.5■□□□□ 0.39
COL7A1-206ENST00000466591 ATXN7L1Q9ULK2 861 aaPredicted RBP17.5■□□□□ 0.39
COL7A1-206ENST00000466591 RNF215Q9Y6U7 377 aa17.5■□□□□ 0.39
COL7A1-206ENST00000466591 ITPR1Q14643 2758 aa17.5■□□□□ 0.39
COL7A1-206ENST00000466591 NUDT21O43809 227 aaKnown RBP17.49■□□□□ 0.39
COL7A1-206ENST00000466591 PRB1P04280 392 aa17.49■□□□□ 0.39
COL7A1-206ENST00000466591 GYPCP04921 128 aa17.49■□□□□ 0.39
COL7A1-206ENST00000466591 PYGLP06737 847 aa17.49■□□□□ 0.39
COL7A1-206ENST00000466591 CD48P09326 243 aa17.49■□□□□ 0.39
COL7A1-206ENST00000466591 PNLIPP16233 465 aa17.49■□□□□ 0.39
COL7A1-206ENST00000466591 VAC14Q08AM6 782 aa17.49■□□□□ 0.39
COL7A1-206ENST00000466591 DPYSL3Q14195 570 aa17.49■□□□□ 0.39
COL7A1-206ENST00000466591 ANKRD20A8PQ5CZ79 823 aa17.49■□□□□ 0.39
COL7A1-206ENST00000466591 LRRC66Q68CR7 880 aa17.49■□□□□ 0.39
COL7A1-206ENST00000466591 KCTD16Q68DU8 428 aa17.49■□□□□ 0.39
COL7A1-206ENST00000466591 B3GNT8Q7Z7M8 397 aa17.49■□□□□ 0.39
COL7A1-206ENST00000466591 TSPAN33Q86UF1 283 aa17.49■□□□□ 0.39
COL7A1-206ENST00000466591 CCL4L1Q8NHW4 92 aa17.49■□□□□ 0.39
COL7A1-206ENST00000466591 TEX101Q9BY14 249 aa17.49■□□□□ 0.39
COL7A1-206ENST00000466591 APPL1Q9UKG1 709 aa17.49■□□□□ 0.39
COL7A1-206ENST00000466591 SUFUQ9UMX1 484 aa17.49■□□□□ 0.39
COL7A1-206ENST00000466591 LOXL2Q9Y4K0 774 aa17.49■□□□□ 0.39
COL7A1-206ENST00000466591 PCDHB11Q9Y5F2 797 aa17.49■□□□□ 0.39
COL7A1-206ENST00000466591 ATRXP46100 2492 aa17.48■□□□□ 0.39
COL7A1-206ENST00000466591 ERVH48-1M5A8F1 160 aa17.48■□□□□ 0.39
COL7A1-206ENST00000466591 CASC3O15234 703 aaKnown RBP17.48■□□□□ 0.39
COL7A1-206ENST00000466591 PROSCO94903 275 aa17.48■□□□□ 0.39
COL7A1-206ENST00000466591 PEX11BO96011 259 aa17.48■□□□□ 0.39
COL7A1-206ENST00000466591 HGFP14210 728 aa17.48■□□□□ 0.39
COL7A1-206ENST00000466591 ZNF30P17039 623 aa17.48■□□□□ 0.39
COL7A1-206ENST00000466591 LHCGRP22888 699 aa17.48■□□□□ 0.39
COL7A1-206ENST00000466591 UGT1A5P35504 534 aa17.48■□□□□ 0.39
COL7A1-206ENST00000466591 PBX1P40424 430 aa17.48■□□□□ 0.39
COL7A1-206ENST00000466591 MAPK10P53779 464 aa17.48■□□□□ 0.39
COL7A1-206ENST00000466591 DSC2Q02487 901 aa17.48■□□□□ 0.39
COL7A1-206ENST00000466591 GALNT2Q10471 571 aa17.48■□□□□ 0.39
COL7A1-206ENST00000466591 TRIM14Q14142 442 aa17.48■□□□□ 0.39
COL7A1-206ENST00000466591 TMEM164Q5U3C3 297 aa17.48■□□□□ 0.39
COL7A1-206ENST00000466591 NCBP2-AS2Q69YL0 99 aa17.48■□□□□ 0.39
COL7A1-206ENST00000466591 MARK2Q7KZI7 788 aaKnown RBP17.48■□□□□ 0.39
COL7A1-206ENST00000466591 SPRED1Q7Z699 444 aa17.48■□□□□ 0.39
COL7A1-206ENST00000466591 PIM3Q86V86 326 aa17.48■□□□□ 0.39
COL7A1-206ENST00000466591 LSM14AQ8ND56 463 aaKnown RBP17.48■□□□□ 0.39
COL7A1-206ENST00000466591 LPCAT1Q8NF37 534 aa17.48■□□□□ 0.39
COL7A1-206ENST00000466591 SPOCK2Q92563 424 aa17.48■□□□□ 0.39
COL7A1-206ENST00000466591 TMEM159Q96B96 161 aa17.48■□□□□ 0.39
COL7A1-206ENST00000466591 PRR11Q96HE9 360 aaPredicted RBP17.48■□□□□ 0.39
COL7A1-206ENST00000466591 XPO4Q9C0E2 1151 aaKnown RBP17.48■□□□□ 0.39
COL7A1-206ENST00000466591 TRNAU1APQ9NX07 287 aaKnown RBP17.48■□□□□ 0.39
COL7A1-206ENST00000466591 SEPT10Q9P0V9 454 aa17.48■□□□□ 0.39
COL7A1-206ENST00000466591 TAAR2Q9P1P5 351 aa17.48■□□□□ 0.39
COL7A1-206ENST00000466591 CHKBQ9Y259 395 aa17.48■□□□□ 0.39
COL7A1-206ENST00000466591 SHROOM3Q8TF72 1996 aa17.48■□□□□ 0.39
COL7A1-206ENST00000466591 NBEAQ8NFP9 2946 aa17.47■□□□□ 0.39
COL7A1-206ENST00000466591 A0A1W2PQM1 296 aa17.47■□□□□ 0.39
COL7A1-206ENST00000466591 PMS2P1A4D2B8 440 aa17.47■□□□□ 0.39
COL7A1-206ENST00000466591 CAPN8A6NHC0 703 aa17.47■□□□□ 0.39
COL7A1-206ENST00000466591 CDRT15L2A8MXV6 281 aa17.47■□□□□ 0.39
COL7A1-206ENST00000466591 MATN3O15232 486 aa17.47■□□□□ 0.39
COL7A1-206ENST00000466591 NOBOXO60393 691 aa17.47■□□□□ 0.39
COL7A1-206ENST00000466591 GM2AP17900 193 aa17.47■□□□□ 0.39
COL7A1-206ENST00000466591 CCNCP24863 283 aa17.47■□□□□ 0.39
COL7A1-206ENST00000466591 SLC5A2P31639 672 aa17.47■□□□□ 0.39
COL7A1-206ENST00000466591 CCKBRP32239 447 aa17.47■□□□□ 0.39
COL7A1-206ENST00000466591 ACTR1BP42025 376 aa17.47■□□□□ 0.39
COL7A1-206ENST00000466591 POLD2P49005 469 aa17.47■□□□□ 0.39
COL7A1-206ENST00000466591 PDX1P52945 283 aa17.47■□□□□ 0.39
COL7A1-206ENST00000466591 MAZP56270 477 aaKnown RBP17.47■□□□□ 0.39
COL7A1-206ENST00000466591 ACTR1AP61163 376 aa17.47■□□□□ 0.39
COL7A1-206ENST00000466591 HLTFQ14527 1009 aaKnown RBP eCLIP17.47■□□□□ 0.39
COL7A1-206ENST00000466591 MESDQ14696 234 aa17.47■□□□□ 0.39
COL7A1-206ENST00000466591 PAFAH1B3Q15102 231 aaKnown RBP17.47■□□□□ 0.39
COL7A1-206ENST00000466591 OGFOD3Q6PK18 319 aa17.47■□□□□ 0.39
COL7A1-206ENST00000466591 GALNT13Q8IUC8 556 aa17.47■□□□□ 0.39
COL7A1-206ENST00000466591 PELI3Q8N2H9 469 aa17.47■□□□□ 0.39
COL7A1-206ENST00000466591 TEX26Q8N6G2 289 aa17.47■□□□□ 0.39
COL7A1-206ENST00000466591 CCHCR1Q8TD31 782 aa17.47■□□□□ 0.39
COL7A1-206ENST00000466591 NSMCE3Q96MG7 304 aa17.47■□□□□ 0.39
COL7A1-206ENST00000466591 OR2M4Q96R27 311 aa17.47■□□□□ 0.39
COL7A1-206ENST00000466591 AMACRQ9UHK6 382 aa17.47■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms