RNA–Protein interactions for RNA: ENST00000448971.5

USP39-206, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 610 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-206ENST00000448971 NUS1Q96E22 293 aa14.59□□□□□ -0.07
USP39-206ENST00000448971 RBM15Q96T37 977 aaKnown RBP eCLIP14.59□□□□□ -0.07
USP39-206ENST00000448971 FERMT1Q9BQL6 677 aa14.59□□□□□ -0.07
USP39-206ENST00000448971 HERPUD2Q9BSE4 406 aa14.59□□□□□ -0.07
USP39-206ENST00000448971 NRSN2Q9GZP1 204 aa14.59□□□□□ -0.07
USP39-206ENST00000448971 PCDH9Q9HC56 1237 aa14.59□□□□□ -0.07
USP39-206ENST00000448971 MBNL1Q9NR56 388 aaKnown RBP14.59□□□□□ -0.07
USP39-206ENST00000448971 DNAJC28Q9NX36 388 aa14.59□□□□□ -0.07
USP39-206ENST00000448971 TRPM6Q9BX84 2022 aa14.58□□□□□ -0.08
USP39-206ENST00000448971 CFAP69A5D8W1 941 aa14.58□□□□□ -0.08
USP39-206ENST00000448971 GOLGA6CA6NDK9 693 aa14.58□□□□□ -0.08
USP39-206ENST00000448971 GOLGA6BA6NDN3 693 aa14.58□□□□□ -0.08
USP39-206ENST00000448971 CAPN8A6NHC0 703 aa14.58□□□□□ -0.08
USP39-206ENST00000448971 H3BM21 787 aa14.58□□□□□ -0.08
USP39-206ENST00000448971 ATXN7O15265 892 aaPredicted RBP14.58□□□□□ -0.08
USP39-206ENST00000448971 DDX3YO15523 660 aaKnown RBP14.58□□□□□ -0.08
USP39-206ENST00000448971 FZD6O60353 706 aa14.58□□□□□ -0.08
USP39-206ENST00000448971 HEXIM1O94992 359 aaKnown RBP14.58□□□□□ -0.08
USP39-206ENST00000448971 GOLGA6DP0CG33 693 aa14.58□□□□□ -0.08
USP39-206ENST00000448971 LHCGRP22888 699 aa14.58□□□□□ -0.08
USP39-206ENST00000448971 HNF1BP35680 557 aa14.58□□□□□ -0.08
USP39-206ENST00000448971 RXRGP48443 463 aa14.58□□□□□ -0.08
USP39-206ENST00000448971 PFN3P60673 137 aa14.58□□□□□ -0.08
USP39-206ENST00000448971 SKOR1P84550 965 aa14.58□□□□□ -0.08
USP39-206ENST00000448971 PTK2BQ14289 1009 aa14.58□□□□□ -0.08
USP39-206ENST00000448971 WSCD2Q2TBF2 565 aa14.58□□□□□ -0.08
USP39-206ENST00000448971 TEX44Q53QW1 395 aa14.58□□□□□ -0.08
USP39-206ENST00000448971 TSPAN33Q86UF1 283 aa14.58□□□□□ -0.08
USP39-206ENST00000448971 ACTL9Q8TC94 416 aa14.58□□□□□ -0.08
USP39-206ENST00000448971 PIH1D2Q8WWB5 315 aa14.58□□□□□ -0.08
USP39-206ENST00000448971 HTR3CQ8WXA8 447 aa14.58□□□□□ -0.08
USP39-206ENST00000448971 SCRN2Q96FV2 425 aa14.58□□□□□ -0.08
USP39-206ENST00000448971 MCCC1Q96RQ3 725 aaPredicted RBP14.58□□□□□ -0.08
USP39-206ENST00000448971 FAM118BQ9BPY3 351 aa14.58□□□□□ -0.08
USP39-206ENST00000448971 GPR27Q9NS67 375 aa14.58□□□□□ -0.08
USP39-206ENST00000448971 GOLGA6AQ9NYA3 693 aa14.58□□□□□ -0.08
USP39-206ENST00000448971 DNPEPQ9ULA0 475 aa14.58□□□□□ -0.08
USP39-206ENST00000448971 EFR3BQ9Y2G0 817 aa14.58□□□□□ -0.08
USP39-206ENST00000448971 COL6A6A6NMZ7 2263 aa14.57□□□□□ -0.08
USP39-206ENST00000448971 A0A0J9YYE9 177 aa14.57□□□□□ -0.08
USP39-206ENST00000448971 SPTY2D1-AS1A0A0U1RR47 76 aa14.57□□□□□ -0.08
USP39-206ENST00000448971 F5H423 210 aaPredicted RBP14.57□□□□□ -0.08
USP39-206ENST00000448971 PSMD11O00231 422 aa14.57□□□□□ -0.08
USP39-206ENST00000448971 TRBC1P01850 177 aa14.57□□□□□ -0.08
USP39-206ENST00000448971 MMP2P08253 660 aa14.57□□□□□ -0.08
USP39-206ENST00000448971 NFKB1P19838 968 aa14.57□□□□□ -0.08
USP39-206ENST00000448971 HTR1BP28222 390 aa14.57□□□□□ -0.08
USP39-206ENST00000448971 TNNT3P45378 269 aaPredicted RBP14.57□□□□□ -0.08
USP39-206ENST00000448971 EIF3EP60228 445 aaKnown RBP14.57□□□□□ -0.08
USP39-206ENST00000448971 RPL26P61254 145 aaKnown RBP14.57□□□□□ -0.08
USP39-206ENST00000448971 YPEL5P62699 121 aa14.57□□□□□ -0.08
USP39-206ENST00000448971 XRCC4Q13426 336 aa14.57□□□□□ -0.08
USP39-206ENST00000448971 MTM1Q13496 603 aa14.57□□□□□ -0.08
USP39-206ENST00000448971 GALNT3Q14435 633 aa14.57□□□□□ -0.08
USP39-206ENST00000448971 HS1BP3Q53T59 392 aa14.57□□□□□ -0.08
USP39-206ENST00000448971 ZNF542PQ5EBM4 170 aa14.57□□□□□ -0.08
USP39-206ENST00000448971 HES3Q5TGS1 186 aa14.57□□□□□ -0.08
USP39-206ENST00000448971 LRRC66Q68CR7 880 aa14.57□□□□□ -0.08
USP39-206ENST00000448971 CACTIN-AS1Q8N1I8 211 aa14.57□□□□□ -0.08
USP39-206ENST00000448971 LSM14AQ8ND56 463 aaKnown RBP14.57□□□□□ -0.08
USP39-206ENST00000448971 IFT43Q96FT9 208 aa14.57□□□□□ -0.08
USP39-206ENST00000448971 IMP4Q96G21 291 aaKnown RBP14.57□□□□□ -0.08
USP39-206ENST00000448971 HES6Q96HZ4 224 aa14.57□□□□□ -0.08
USP39-206ENST00000448971 TEKT5Q96M29 485 aa14.57□□□□□ -0.08
USP39-206ENST00000448971 VAT1Q99536 393 aa14.57□□□□□ -0.08
USP39-206ENST00000448971 ADGRE3Q9BY15 652 aa14.57□□□□□ -0.08
USP39-206ENST00000448971 SLC25A51Q9H1U9 297 aa14.57□□□□□ -0.08
USP39-206ENST00000448971 GLOD4Q9HC38 313 aa14.57□□□□□ -0.08
USP39-206ENST00000448971 RSPH14Q9UHP6 348 aa14.57□□□□□ -0.08
USP39-206ENST00000448971 METRNQ9UJH8 293 aa14.57□□□□□ -0.08
USP39-206ENST00000448971 RPL26L1Q9UNX3 145 aaKnown RBP14.57□□□□□ -0.08
USP39-206ENST00000448971 AK5Q9Y6K8 562 aa14.57□□□□□ -0.08
USP39-206ENST00000448971 TENM4Q6N022 2769 aa14.56□□□□□ -0.08
USP39-206ENST00000448971 TOR1BO14657 336 aa14.56□□□□□ -0.08
USP39-206ENST00000448971 STK10O94804 968 aaKnown RBP14.56□□□□□ -0.08
USP39-206ENST00000448971 MT-CYBP00156 380 aaPredicted RBP14.56□□□□□ -0.08
USP39-206ENST00000448971 SLC4A1P02730 911 aa14.56□□□□□ -0.08
USP39-206ENST00000448971 RBP3P10745 1247 aa14.56□□□□□ -0.08
USP39-206ENST00000448971 ZNF30P17039 623 aa14.56□□□□□ -0.08
USP39-206ENST00000448971 RBL1P28749 1068 aa14.56□□□□□ -0.08
USP39-206ENST00000448971 ETV3P41162 512 aa14.56□□□□□ -0.08
USP39-206ENST00000448971 HNRNPKP61978 463 aaKnown RBP eCLIP14.56□□□□□ -0.08
USP39-206ENST00000448971 WASHC5Q12768 1159 aa14.56□□□□□ -0.08
USP39-206ENST00000448971 FZD2Q14332 565 aa14.56□□□□□ -0.08
USP39-206ENST00000448971 IHHQ14623 411 aa14.56□□□□□ -0.08
USP39-206ENST00000448971 INPP5AQ14642 412 aa14.56□□□□□ -0.08
USP39-206ENST00000448971 AGERQ15109 404 aa14.56□□□□□ -0.08
USP39-206ENST00000448971 PTPRRQ15256 657 aa14.56□□□□□ -0.08
USP39-206ENST00000448971 TPRG1LQ5T0D9 272 aa14.56□□□□□ -0.08
USP39-206ENST00000448971 DARS2Q6PI48 645 aaKnown RBP14.56□□□□□ -0.08
USP39-206ENST00000448971 MACC1Q6ZN28 852 aa14.56□□□□□ -0.08
USP39-206ENST00000448971 PID1Q7Z2X4 250 aa14.56□□□□□ -0.08
USP39-206ENST00000448971 KDELC2Q7Z4H8 507 aa14.56□□□□□ -0.08
USP39-206ENST00000448971 HSD11B1LQ7Z5J1 315 aa14.56□□□□□ -0.08
USP39-206ENST00000448971 ZNF567Q8N184 647 aa14.56□□□□□ -0.08
USP39-206ENST00000448971 SPATA22Q8NHS9 363 aa14.56□□□□□ -0.08
USP39-206ENST00000448971 SNIP1Q8TAD8 396 aaKnown RBP14.56□□□□□ -0.08
USP39-206ENST00000448971 DTD2Q96FN9 168 aa14.56□□□□□ -0.08
USP39-206ENST00000448971 COQ10AQ96MF6 247 aa14.56□□□□□ -0.08
USP39-206ENST00000448971 SMIM14Q96QK8 99 aa14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms