RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 FAM126BQ8IXS8 530 aa7.4□□□□□ -1.22
SYNE1-213ENST00000448038 PQLC3Q8N755 202 aa7.4□□□□□ -1.22
SYNE1-213ENST00000448038 KLHDC9Q8NEP7 349 aa7.4□□□□□ -1.22
SYNE1-213ENST00000448038 CYB5D2Q8WUJ1 264 aa7.4□□□□□ -1.22
SYNE1-213ENST00000448038 CD101Q93033 1021 aa7.4□□□□□ -1.22
SYNE1-213ENST00000448038 UBE2E3Q969T4 207 aa7.4□□□□□ -1.22
SYNE1-213ENST00000448038 PIF1Q9H611 641 aa7.4□□□□□ -1.22
SYNE1-213ENST00000448038 ZNF556Q9HAH1 456 aa7.4□□□□□ -1.22
SYNE1-213ENST00000448038 SNX8Q9Y5X2 465 aa7.4□□□□□ -1.22
SYNE1-213ENST00000448038 TCRBV7S3A2A0A539 114 aa7.4□□□□□ -1.22
SYNE1-213ENST00000448038 CCDC154A6NI56 674 aa7.4□□□□□ -1.22
SYNE1-213ENST00000448038 SLC7A4O43246 635 aa7.4□□□□□ -1.22
SYNE1-213ENST00000448038 PCCBP05166 539 aa7.4□□□□□ -1.22
SYNE1-213ENST00000448038 TYRP14679 529 aa7.4□□□□□ -1.22
SYNE1-213ENST00000448038 CXCR2P25025 360 aa7.4□□□□□ -1.22
SYNE1-213ENST00000448038 PSMA4P25789 261 aaKnown RBP7.4□□□□□ -1.22
SYNE1-213ENST00000448038 CRHR1P34998 444 aa7.4□□□□□ -1.22
SYNE1-213ENST00000448038 BMPR1AP36894 532 aa7.4□□□□□ -1.22
SYNE1-213ENST00000448038 GRIA1P42261 906 aa7.4□□□□□ -1.22
SYNE1-213ENST00000448038 CDH13P55290 713 aa7.4□□□□□ -1.22
SYNE1-213ENST00000448038 NCALDP61601 193 aa7.4□□□□□ -1.22
SYNE1-213ENST00000448038 GALNT2Q10471 571 aa7.4□□□□□ -1.22
SYNE1-213ENST00000448038 OASLQ15646 514 aaKnown RBP7.4□□□□□ -1.22
SYNE1-213ENST00000448038 PLA2G4EQ3MJ16 856 aa7.4□□□□□ -1.22
SYNE1-213ENST00000448038 PPM1JQ5JR12 505 aa7.4□□□□□ -1.22
SYNE1-213ENST00000448038 ZDHHC24Q6UX98 284 aa7.4□□□□□ -1.22
SYNE1-213ENST00000448038 VITQ6UXI7 678 aa7.4□□□□□ -1.22
SYNE1-213ENST00000448038 GPRIN3Q6ZVF9 776 aa7.4□□□□□ -1.22
SYNE1-213ENST00000448038 C14orf80Q86SX3 495 aa7.4□□□□□ -1.22
SYNE1-213ENST00000448038 SERPINA9Q86WD7 417 aa7.4□□□□□ -1.22
SYNE1-213ENST00000448038 PHYKPLQ8IUZ5 450 aa7.4□□□□□ -1.22
SYNE1-213ENST00000448038 SYT12Q8IV01 421 aa7.4□□□□□ -1.22
SYNE1-213ENST00000448038 CENPLQ8N0S6 344 aaPredicted RBP7.4□□□□□ -1.22
SYNE1-213ENST00000448038 HERVK_113Q902F9 699 aa7.4□□□□□ -1.22
SYNE1-213ENST00000448038 FAM120BQ96EK7 910 aaKnown RBP7.4□□□□□ -1.22
SYNE1-213ENST00000448038 MAGED4Q96JG8 741 aa7.4□□□□□ -1.22
SYNE1-213ENST00000448038 SUV39H2Q9H5I1 410 aa7.4□□□□□ -1.22
SYNE1-213ENST00000448038 ZNF180Q9UJW8 692 aa7.4□□□□□ -1.22
SYNE1-213ENST00000448038 PLLPQ9Y342 182 aa7.4□□□□□ -1.22
SYNE1-213ENST00000448038 RAP2CQ9Y3L5 183 aa7.4□□□□□ -1.22
SYNE1-213ENST00000448038 ARL5AQ9Y689 179 aa7.4□□□□□ -1.22
SYNE1-213ENST00000448038 NPEPPSL1A6NEC2 478 aa7.4□□□□□ -1.23
SYNE1-213ENST00000448038 PEX11AO75192 247 aa7.4□□□□□ -1.23
SYNE1-213ENST00000448038 ULK1O75385 1050 aa7.4□□□□□ -1.23
SYNE1-213ENST00000448038 WDR47O94967 919 aa7.4□□□□□ -1.23
SYNE1-213ENST00000448038 OTCP00480 354 aa7.4□□□□□ -1.23
SYNE1-213ENST00000448038 COL6A2P12110 1019 aa7.4□□□□□ -1.23
SYNE1-213ENST00000448038 POLD2P49005 469 aa7.4□□□□□ -1.23
SYNE1-213ENST00000448038 TBL3Q12788 808 aaKnown RBP7.4□□□□□ -1.23
SYNE1-213ENST00000448038 TRMT10BQ6PF06 316 aaKnown RBP7.4□□□□□ -1.23
SYNE1-213ENST00000448038 SNX32Q86XE0 403 aa7.4□□□□□ -1.23
SYNE1-213ENST00000448038 DENND6AQ8IWF6 608 aa7.4□□□□□ -1.23
SYNE1-213ENST00000448038 AHI1Q8N157 1196 aa7.4□□□□□ -1.23
SYNE1-213ENST00000448038 KRT78Q8N1N4 520 aa7.4□□□□□ -1.23
SYNE1-213ENST00000448038 GALNT4Q8N4A0 578 aa7.4□□□□□ -1.23
SYNE1-213ENST00000448038 NXNL1Q96CM4 212 aa7.4□□□□□ -1.23
SYNE1-213ENST00000448038 NAF1Q96HR8 494 aaKnown RBP7.4□□□□□ -1.23
SYNE1-213ENST00000448038 SLCO1B3Q9NPD5 702 aa7.4□□□□□ -1.23
SYNE1-213ENST00000448038 TMEM248Q9NWD8 314 aa7.4□□□□□ -1.23
SYNE1-213ENST00000448038 NDOR1Q9UHB4 597 aa7.4□□□□□ -1.23
SYNE1-213ENST00000448038 KCNE2Q9Y6J6 123 aa7.4□□□□□ -1.23
SYNE1-213ENST00000448038 DOCK2Q92608 1830 aa7.4□□□□□ -1.23
SYNE1-213ENST00000448038 OR2AG2A6NM03 316 aa7.4□□□□□ -1.23
SYNE1-213ENST00000448038 SNX3O60493 162 aa7.4□□□□□ -1.23
SYNE1-213ENST00000448038 CCND1P24385 295 aa7.4□□□□□ -1.23
SYNE1-213ENST00000448038 XKR6Q5GH73 641 aa7.4□□□□□ -1.23
SYNE1-213ENST00000448038 PDE12Q6L8Q7 609 aaKnown RBP7.4□□□□□ -1.23
SYNE1-213ENST00000448038 RIPOR1Q6ZS17 1223 aa7.4□□□□□ -1.23
SYNE1-213ENST00000448038 ZBTB2Q8N680 514 aa7.4□□□□□ -1.23
SYNE1-213ENST00000448038 ST13P5Q8NFI4 369 aaPredicted RBP7.4□□□□□ -1.23
SYNE1-213ENST00000448038 OTULINQ96BN8 352 aa7.4□□□□□ -1.23
SYNE1-213ENST00000448038 TOX2Q96NM4 488 aa7.4□□□□□ -1.23
SYNE1-213ENST00000448038 HERC2P3Q9BVR0 1158 aa7.4□□□□□ -1.23
SYNE1-213ENST00000448038 MYLK2Q9H1R3 596 aa7.4□□□□□ -1.23
SYNE1-213ENST00000448038 IMP3Q9NV31 184 aaKnown RBP7.4□□□□□ -1.23
SYNE1-213ENST00000448038 POLR3BQ9NW08 1133 aaPredicted RBP7.4□□□□□ -1.23
SYNE1-213ENST00000448038 TRPC4Q9UBN4 977 aa7.4□□□□□ -1.23
SYNE1-213ENST00000448038 CROTQ9UKG9 612 aa7.4□□□□□ -1.23
SYNE1-213ENST00000448038 H3BM21 787 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 MRASO14807 208 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 SEC24DO94855 1032 aaPredicted RBP7.39□□□□□ -1.23
SYNE1-213ENST00000448038 BPGMP07738 259 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 CORO7P57737 925 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 EML3Q32P44 896 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 ARSIQ5FYB1 569 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 LY6G5CQ5SRR4 150 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 FSTL4Q6MZW2 842 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 SCIMPQ6UWF3 145 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 DNAJC14Q6Y2X3 702 aaPredicted RBP7.39□□□□□ -1.23
SYNE1-213ENST00000448038 BEND7Q8N7W2 519 aaPredicted RBP7.39□□□□□ -1.23
SYNE1-213ENST00000448038 INPP5DQ92835 1189 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 AGAP2Q99490 1192 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 TMLHEQ9NVH6 421 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 CHCHD3Q9NX63 227 aaKnown RBP7.39□□□□□ -1.23
SYNE1-213ENST00000448038 STX18Q9P2W9 335 aaKnown RBP7.39□□□□□ -1.23
SYNE1-213ENST00000448038 SLC27A6Q9Y2P4 619 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 ISM1B1AKI9 464 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 S100A3P33764 101 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 CHRNB3Q05901 458 aa7.39□□□□□ -1.23
SYNE1-213ENST00000448038 FRG1Q14331 258 aaKnown RBP7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms