RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 LPCAT1Q8NF37 534 aa11.87□□□□□ -0.51
MSH6-204ENST00000445503 FAM162AQ96A26 154 aa11.87□□□□□ -0.51
MSH6-204ENST00000445503 TMEM74Q96NL1 305 aa11.87□□□□□ -0.51
MSH6-204ENST00000445503 RIC8BQ9NVN3 520 aa11.87□□□□□ -0.51
MSH6-204ENST00000445503 ARL5CA6NH57 179 aa11.86□□□□□ -0.51
MSH6-204ENST00000445503 SOCS2O14508 198 aa11.86□□□□□ -0.51
MSH6-204ENST00000445503 IRF1P10914 325 aa11.86□□□□□ -0.51
MSH6-204ENST00000445503 KCNE1P15382 129 aa11.86□□□□□ -0.51
MSH6-204ENST00000445503 PIK3CGP48736 1102 aa11.86□□□□□ -0.51
MSH6-204ENST00000445503 ENTPD1P49961 510 aa11.86□□□□□ -0.51
MSH6-204ENST00000445503 CCR3P51677 355 aa11.86□□□□□ -0.51
MSH6-204ENST00000445503 C21orf59P57076 290 aa11.86□□□□□ -0.51
MSH6-204ENST00000445503 LIPEQ05469 1076 aa11.86□□□□□ -0.51
MSH6-204ENST00000445503 OTUD1Q5VV17 481 aaPredicted RBP11.86□□□□□ -0.51
MSH6-204ENST00000445503 FAM45BPQ6NSW5 357 aa11.86□□□□□ -0.51
MSH6-204ENST00000445503 ATP6V0D2Q8N8Y2 350 aa11.86□□□□□ -0.51
MSH6-204ENST00000445503 ZMIZ2Q8NF64 920 aa11.86□□□□□ -0.51
MSH6-204ENST00000445503 FAM45AQ8TCE6 357 aa11.86□□□□□ -0.51
MSH6-204ENST00000445503 SERPINB11Q96P15 392 aa11.86□□□□□ -0.51
MSH6-204ENST00000445503 PARK7Q99497 189 aaKnown RBP11.86□□□□□ -0.51
MSH6-204ENST00000445503 C11orf84Q9BUA3 381 aaPredicted RBP11.86□□□□□ -0.51
MSH6-204ENST00000445503 SYTL2Q9HCH5 934 aa11.86□□□□□ -0.51
MSH6-204ENST00000445503 LIMD1Q9UGP4 676 aa11.86□□□□□ -0.51
MSH6-204ENST00000445503 PTGESO14684 152 aa11.86□□□□□ -0.51
MSH6-204ENST00000445503 SLC22A2O15244 555 aa11.86□□□□□ -0.51
MSH6-204ENST00000445503 STX7O15400 261 aaKnown RBP11.86□□□□□ -0.51
MSH6-204ENST00000445503 CLASP2O75122 1294 aaKnown RBP11.86□□□□□ -0.51
MSH6-204ENST00000445503 GOT2P00505 430 aaKnown RBP11.86□□□□□ -0.51
MSH6-204ENST00000445503 SERPINF2P08697 491 aa11.86□□□□□ -0.51
MSH6-204ENST00000445503 HCAR3P49019 387 aa11.86□□□□□ -0.51
MSH6-204ENST00000445503 PSMD7P51665 324 aa11.86□□□□□ -0.51
MSH6-204ENST00000445503 ARSDP51689 593 aa11.86□□□□□ -0.51
MSH6-204ENST00000445503 NAA20P61599 178 aa11.86□□□□□ -0.51
MSH6-204ENST00000445503 NRG1Q02297 640 aaPredicted RBP11.86□□□□□ -0.51
MSH6-204ENST00000445503 MAPRE1Q15691 268 aaKnown RBP11.86□□□□□ -0.51
MSH6-204ENST00000445503 ABRAXAS1Q6UWZ7 409 aa11.86□□□□□ -0.51
MSH6-204ENST00000445503 XKR5Q6UX68 686 aa11.86□□□□□ -0.51
MSH6-204ENST00000445503 SMG8Q8ND04 991 aaKnown RBP11.86□□□□□ -0.51
MSH6-204ENST00000445503 BPIFB6Q8NFQ5 453 aa11.86□□□□□ -0.51
MSH6-204ENST00000445503 ADAM2Q99965 735 aa11.86□□□□□ -0.51
MSH6-204ENST00000445503 MARCH4Q9P2E8 410 aaPredicted RBP11.86□□□□□ -0.51
MSH6-204ENST00000445503 MYO1GB0I1T2 1018 aa11.86□□□□□ -0.51
MSH6-204ENST00000445503 TNPO2O14787 897 aaKnown RBP11.86□□□□□ -0.51
MSH6-204ENST00000445503 IRAK2O43187 625 aa11.86□□□□□ -0.51
MSH6-204ENST00000445503 ZNF135P52742 658 aaPredicted RBP11.86□□□□□ -0.51
MSH6-204ENST00000445503 DIO3P55073 304 aa11.86□□□□□ -0.51
MSH6-204ENST00000445503 TSNQ15631 228 aaKnown RBP11.86□□□□□ -0.51
MSH6-204ENST00000445503 FSCN1Q16658 493 aaKnown RBP11.86□□□□□ -0.51
MSH6-204ENST00000445503 IL27RAQ6UWB1 636 aa11.86□□□□□ -0.51
MSH6-204ENST00000445503 MILR1Q7Z6M3 343 aa11.86□□□□□ -0.51
MSH6-204ENST00000445503 ANKRD23Q86SG2 305 aa11.86□□□□□ -0.51
MSH6-204ENST00000445503 ZNF555Q8NEP9 628 aa11.86□□□□□ -0.51
MSH6-204ENST00000445503 NPLOC4Q8TAT6 608 aa11.86□□□□□ -0.51
MSH6-204ENST00000445503 STAG3L4Q8TBR4 150 aa11.86□□□□□ -0.51
MSH6-204ENST00000445503 LRCH3Q96II8 777 aa11.86□□□□□ -0.51
MSH6-204ENST00000445503 TIMMDC1Q9NPL8 285 aa11.86□□□□□ -0.51
MSH6-204ENST00000445503 MIOSQ9NXC5 875 aa11.86□□□□□ -0.51
MSH6-204ENST00000445503 SLC27A5Q9Y2P5 690 aa11.86□□□□□ -0.51
MSH6-204ENST00000445503 I6L893 689 aaPredicted RBP11.86□□□□□ -0.51
MSH6-204ENST00000445503 CBX4O00257 560 aa11.86□□□□□ -0.51
MSH6-204ENST00000445503 PLOD2O00469 737 aa11.86□□□□□ -0.51
MSH6-204ENST00000445503 GNAO1P09471 354 aa11.86□□□□□ -0.51
MSH6-204ENST00000445503 SLC2A4P14672 509 aa11.86□□□□□ -0.51
MSH6-204ENST00000445503 IMPDH1P20839 514 aa11.86□□□□□ -0.51
MSH6-204ENST00000445503 SLC5A2P31639 672 aa11.86□□□□□ -0.51
MSH6-204ENST00000445503 NDST2P52849 883 aa11.86□□□□□ -0.51
MSH6-204ENST00000445503 ITGADQ13349 1161 aa11.86□□□□□ -0.51
MSH6-204ENST00000445503 TSTA3Q13630 321 aaPredicted RBP11.86□□□□□ -0.51
MSH6-204ENST00000445503 GTF2H3Q13889 308 aa11.86□□□□□ -0.51
MSH6-204ENST00000445503 TAF1CQ15572 869 aaPredicted RBP11.86□□□□□ -0.51
MSH6-204ENST00000445503 TECRLQ5HYJ1 363 aa11.86□□□□□ -0.51
MSH6-204ENST00000445503 PRMT9Q6P2P2 845 aa11.86□□□□□ -0.51
MSH6-204ENST00000445503 C2CD4AQ8NCU7 369 aaPredicted RBP11.86□□□□□ -0.51
MSH6-204ENST00000445503 HAPLN3Q96S86 360 aa11.86□□□□□ -0.51
MSH6-204ENST00000445503 BDH2Q9BUT1 245 aa11.86□□□□□ -0.51
MSH6-204ENST00000445503 CINPQ9BW66 212 aaPredicted RBP11.86□□□□□ -0.51
MSH6-204ENST00000445503 SLC25A51Q9H1U9 297 aa11.86□□□□□ -0.51
MSH6-204ENST00000445503 ZNF696Q9H7X3 374 aa11.86□□□□□ -0.51
MSH6-204ENST00000445503 LATS2Q9NRM7 1088 aa11.86□□□□□ -0.51
MSH6-204ENST00000445503 NPEPPSL1A6NEC2 478 aa11.85□□□□□ -0.51
MSH6-204ENST00000445503 FFAR3O14843 346 aa11.85□□□□□ -0.51
MSH6-204ENST00000445503 GPR42O15529 346 aa11.85□□□□□ -0.51
MSH6-204ENST00000445503 TBC1D4O60343 1298 aa11.85□□□□□ -0.51
MSH6-204ENST00000445503 VPS26AO75436 327 aa11.85□□□□□ -0.51
MSH6-204ENST00000445503 GRK4P32298 578 aa11.85□□□□□ -0.51
MSH6-204ENST00000445503 CYP2C18P33260 490 aa11.85□□□□□ -0.51
MSH6-204ENST00000445503 LSM3P62310 102 aaKnown RBP11.85□□□□□ -0.51
MSH6-204ENST00000445503 MERTKQ12866 999 aa11.85□□□□□ -0.51
MSH6-204ENST00000445503 PTRHD1Q6GMV3 140 aaKnown RBP11.85□□□□□ -0.51
MSH6-204ENST00000445503 CPSF7Q8N684 471 aaKnown RBP11.85□□□□□ -0.51
MSH6-204ENST00000445503 MRGPRX2Q96LB1 330 aa11.85□□□□□ -0.51
MSH6-204ENST00000445503 ZYG11BQ9C0D3 744 aa11.85□□□□□ -0.51
MSH6-204ENST00000445503 SENP6Q9GZR1 1112 aaPredicted RBP11.85□□□□□ -0.51
MSH6-204ENST00000445503 PLGRKTQ9HBL7 147 aa11.85□□□□□ -0.51
MSH6-204ENST00000445503 ZFYVE28Q9HCC9 887 aa11.85□□□□□ -0.51
MSH6-204ENST00000445503 PHIPQ8WWQ0 1821 aa11.85□□□□□ -0.51
MSH6-204ENST00000445503 PRSS51A0A1B0GVH4 220 aa11.85□□□□□ -0.51
MSH6-204ENST00000445503 ENPP3O14638 875 aa11.85□□□□□ -0.51
MSH6-204ENST00000445503 CNTN5O94779 1100 aa11.85□□□□□ -0.51
MSH6-204ENST00000445503 ZBTB11O95625 1053 aaPredicted RBP11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms