RNA–Protein interactions for RNA: ENST00000441114.5

SHH-204, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 888 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-204ENST00000441114 GDF10P55107 478 aa18.63■□□□□ 0.57
SHH-204ENST00000441114 NFATC4Q14934 902 aa18.63■□□□□ 0.57
SHH-204ENST00000441114 TRIP6Q15654 476 aaKnown RBP18.63■□□□□ 0.57
SHH-204ENST00000441114 CDKN3Q16667 212 aa18.63■□□□□ 0.57
SHH-204ENST00000441114 LONRF2Q1L5Z9 754 aa18.63■□□□□ 0.57
SHH-204ENST00000441114 INAVAQ3KP66 663 aa18.63■□□□□ 0.57
SHH-204ENST00000441114 SIRPB2Q5JXA9 342 aa18.63■□□□□ 0.57
SHH-204ENST00000441114 ESRP1Q6NXG1 681 aaKnown RBP18.63■□□□□ 0.57
SHH-204ENST00000441114 MACC1Q6ZN28 852 aa18.63■□□□□ 0.57
SHH-204ENST00000441114 NYAP1Q6ZVC0 841 aa18.63■□□□□ 0.57
SHH-204ENST00000441114 RBFAQ8N0V3 343 aa18.63■□□□□ 0.57
SHH-204ENST00000441114 SCAMP4Q969E2 229 aa18.63■□□□□ 0.57
SHH-204ENST00000441114 TSACCQ96A04 125 aaPredicted RBP18.63■□□□□ 0.57
SHH-204ENST00000441114 FUBP1Q96AE4 644 aaKnown RBP18.63■□□□□ 0.57
SHH-204ENST00000441114 AP2M1Q96CW1 435 aa18.63■□□□□ 0.57
SHH-204ENST00000441114 LYSMD1Q96S90 227 aa18.63■□□□□ 0.57
SHH-204ENST00000441114 GORASP1Q9BQQ3 440 aa18.63■□□□□ 0.57
SHH-204ENST00000441114 GPR63Q9BZJ6 419 aa18.63■□□□□ 0.57
SHH-204ENST00000441114 TCEAL2Q9H3H9 227 aaPredicted RBP18.63■□□□□ 0.57
SHH-204ENST00000441114 KCTD5Q9NXV2 234 aa18.63■□□□□ 0.57
SHH-204ENST00000441114 MOSPD1Q9UJG1 213 aa18.63■□□□□ 0.57
SHH-204ENST00000441114 PNMA8BQ9ULN7 279 aaPredicted RBP18.63■□□□□ 0.57
SHH-204ENST00000441114 ZNF148Q9UQR1 794 aa18.63■□□□□ 0.57
SHH-204ENST00000441114 ZNF711Q9Y462 761 aa18.63■□□□□ 0.57
SHH-204ENST00000441114 JRKLQ9Y4A0 524 aa18.63■□□□□ 0.57
SHH-204ENST00000441114 LOC285095A0A1B0GVY8 99 aa18.62■□□□□ 0.57
SHH-204ENST00000441114 C5orf60A6NFR6 353 aa18.62■□□□□ 0.57
SHH-204ENST00000441114 H3BM21 787 aa18.62■□□□□ 0.57
SHH-204ENST00000441114 FFAR2O15552 330 aa18.62■□□□□ 0.57
SHH-204ENST00000441114 KIF5CO60282 957 aa18.62■□□□□ 0.57
SHH-204ENST00000441114 ZNF189O75820 626 aaPredicted RBP18.62■□□□□ 0.57
SHH-204ENST00000441114 PIAS2O75928 621 aa18.62■□□□□ 0.57
SHH-204ENST00000441114 AGTP01019 485 aa18.62■□□□□ 0.57
SHH-204ENST00000441114 TSHRP16473 764 aa18.62■□□□□ 0.57
SHH-204ENST00000441114 GPR1P46091 355 aa18.62■□□□□ 0.57
SHH-204ENST00000441114 HNRNPKP61978 463 aaKnown RBP eCLIP18.62■□□□□ 0.57
SHH-204ENST00000441114 SIM1P81133 766 aaPredicted RBP18.62■□□□□ 0.57
SHH-204ENST00000441114 PPARDQ03181 441 aa18.62■□□□□ 0.57
SHH-204ENST00000441114 OLIG2Q13516 323 aa18.62■□□□□ 0.57
SHH-204ENST00000441114 TCEA2Q15560 299 aa18.62■□□□□ 0.57
SHH-204ENST00000441114 N4BP2L1Q5TBK1 243 aaPredicted RBP18.62■□□□□ 0.57
SHH-204ENST00000441114 HID1Q8IV36 788 aa18.62■□□□□ 0.57
SHH-204ENST00000441114 PHACTR4Q8IZ21 702 aa18.62■□□□□ 0.57
SHH-204ENST00000441114 SLC25A45Q8N413 288 aa18.62■□□□□ 0.57
SHH-204ENST00000441114 LMX1AQ8TE12 382 aa18.62■□□□□ 0.57
SHH-204ENST00000441114 WDR92Q96MX6 357 aa18.62■□□□□ 0.57
SHH-204ENST00000441114 APOL2Q9BQE5 337 aa18.62■□□□□ 0.57
SHH-204ENST00000441114 RIOK2Q9BVS4 552 aaKnown RBP18.62■□□□□ 0.57
SHH-204ENST00000441114 LGR4Q9BXB1 951 aa18.62■□□□□ 0.57
SHH-204ENST00000441114 WDR26Q9H7D7 661 aa18.62■□□□□ 0.57
SHH-204ENST00000441114 ZFYVE1Q9HBF4 777 aa18.62■□□□□ 0.57
SHH-204ENST00000441114 MAGEE1Q9HCI5 957 aa18.62■□□□□ 0.57
SHH-204ENST00000441114 PKD2L2Q9NZM6 624 aa18.62■□□□□ 0.57
SHH-204ENST00000441114 KLQ9UEF7 1012 aa18.62■□□□□ 0.57
SHH-204ENST00000441114 AAR2Q9Y312 384 aaKnown RBP18.62■□□□□ 0.57
SHH-204ENST00000441114 SPO11Q9Y5K1 396 aa18.62■□□□□ 0.57
SHH-204ENST00000441114 LRP4O75096 1905 aa18.61■□□□□ 0.57
SHH-204ENST00000441114 CBFA2T3O75081 653 aa18.61■□□□□ 0.57
SHH-204ENST00000441114 ATP1A1P05023 1023 aaKnown RBP18.61■□□□□ 0.57
SHH-204ENST00000441114 ATXN1LP0C7T5 689 aaKnown RBP18.61■□□□□ 0.57
SHH-204ENST00000441114 NME1P15531 152 aaKnown RBP18.61■□□□□ 0.57
SHH-204ENST00000441114 C1orf61Q13536 156 aa18.61■□□□□ 0.57
SHH-204ENST00000441114 SPARCL1Q14515 664 aa18.61■□□□□ 0.57
SHH-204ENST00000441114 SLC1A5Q15758 541 aa18.61■□□□□ 0.57
SHH-204ENST00000441114 KANSL1Q7Z3B3 1105 aa18.61■□□□□ 0.57
SHH-204ENST00000441114 HEATR4Q86WZ0 1026 aa18.61■□□□□ 0.57
SHH-204ENST00000441114 ATL2Q8NHH9 583 aa18.61■□□□□ 0.57
SHH-204ENST00000441114 AGAP2Q99490 1192 aa18.61■□□□□ 0.57
SHH-204ENST00000441114 FRMD8P1Q9BZ68 369 aaPredicted RBP18.61■□□□□ 0.57
SHH-204ENST00000441114 SLC13A1Q9BZW2 595 aa18.61■□□□□ 0.57
SHH-204ENST00000441114 SUDS3Q9H7L9 328 aaPredicted RBP18.61■□□□□ 0.57
SHH-204ENST00000441114 PHPT1Q9NRX4 125 aaPredicted RBP18.61■□□□□ 0.57
SHH-204ENST00000441114 APOBEC3BQ9UH17 382 aaKnown RBP18.61■□□□□ 0.57
SHH-204ENST00000441114 PCNX2A6NKB5 2137 aa18.61■□□□□ 0.57
SHH-204ENST00000441114 TMEM202A6NGA9 273 aa18.6■□□□□ 0.57
SHH-204ENST00000441114 AURKAO14965 403 aa18.6■□□□□ 0.57
SHH-204ENST00000441114 GCATO75600 419 aa18.6■□□□□ 0.57
SHH-204ENST00000441114 METTL18O95568 372 aa18.6■□□□□ 0.57
SHH-204ENST00000441114 LDOC1O95751 146 aaPredicted RBP18.6■□□□□ 0.57
SHH-204ENST00000441114 IFNB1P01574 187 aa18.6■□□□□ 0.57
SHH-204ENST00000441114 EPOP01588 193 aa18.6■□□□□ 0.57
SHH-204ENST00000441114 MSNP26038 577 aaKnown RBP18.6■□□□□ 0.57
SHH-204ENST00000441114 TRIM23P36406 574 aa18.6■□□□□ 0.57
SHH-204ENST00000441114 SPINT3P49223 89 aa18.6■□□□□ 0.57
SHH-204ENST00000441114 KIAA1024LP59773 190 aa18.6■□□□□ 0.57
SHH-204ENST00000441114 SRP54P61011 504 aaKnown RBP18.6■□□□□ 0.57
SHH-204ENST00000441114 SIX1Q15475 284 aaPredicted RBP18.6■□□□□ 0.57
SHH-204ENST00000441114 OASLQ15646 514 aaKnown RBP18.6■□□□□ 0.57
SHH-204ENST00000441114 PARP6Q2NL67 630 aa18.6■□□□□ 0.57
SHH-204ENST00000441114 ALG11Q2TAA5 492 aa18.6■□□□□ 0.57
SHH-204ENST00000441114 CCDC157Q569K6 752 aa18.6■□□□□ 0.57
SHH-204ENST00000441114 PRRT3Q5FWE3 981 aa18.6■□□□□ 0.57
SHH-204ENST00000441114 ALS2CLQ60I27 953 aa18.6■□□□□ 0.57
SHH-204ENST00000441114 ERMP1Q7Z2K6 904 aa18.6■□□□□ 0.57
SHH-204ENST00000441114 TMC3Q7Z5M5 1100 aa18.6■□□□□ 0.57
SHH-204ENST00000441114 PRUNE1Q86TP1 453 aa18.6■□□□□ 0.57
SHH-204ENST00000441114 NRSN1Q8IZ57 195 aa18.6■□□□□ 0.57
SHH-204ENST00000441114 ZNF548Q8NEK5 533 aaPredicted RBP18.6■□□□□ 0.57
SHH-204ENST00000441114 BLOC1S5Q8TDH9 187 aa18.6■□□□□ 0.57
SHH-204ENST00000441114 BTN2A2Q8WVV5 523 aa18.6■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms