RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 PAFAH1B1P43034 410 aa12.41□□□□□ -0.42
USP40-205ENST00000430158 SPINT3P49223 89 aa12.41□□□□□ -0.42
USP40-205ENST00000430158 PFN3P60673 137 aa12.41□□□□□ -0.42
USP40-205ENST00000430158 DPTQ07507 201 aa12.41□□□□□ -0.42
USP40-205ENST00000430158 SPEM2Q0P670 501 aa12.41□□□□□ -0.42
USP40-205ENST00000430158 PTK6Q13882 451 aa12.41□□□□□ -0.42
USP40-205ENST00000430158 IRF4Q15306 451 aa12.41□□□□□ -0.42
USP40-205ENST00000430158 CSRP2Q16527 193 aa12.41□□□□□ -0.42
USP40-205ENST00000430158 LAYNQ6UX15 382 aa12.41□□□□□ -0.42
USP40-205ENST00000430158 ZNF534Q76KX8 674 aa12.41□□□□□ -0.42
USP40-205ENST00000430158 GSTA5Q7RTV2 222 aa12.41□□□□□ -0.42
USP40-205ENST00000430158 IQCHQ86VS3 1027 aa12.41□□□□□ -0.42
USP40-205ENST00000430158 SPATS2Q86XZ4 545 aaKnown RBP12.41□□□□□ -0.42
USP40-205ENST00000430158 PLA2G15Q8NCC3 412 aa12.41□□□□□ -0.42
USP40-205ENST00000430158 CEP76Q8TAP6 659 aa12.41□□□□□ -0.42
USP40-205ENST00000430158 CPT1BQ92523 772 aa12.41□□□□□ -0.42
USP40-205ENST00000430158 ABCG8Q9H221 673 aa12.41□□□□□ -0.42
USP40-205ENST00000430158 TRABDQ9H4I3 376 aa12.41□□□□□ -0.42
USP40-205ENST00000430158 CASS4Q9NQ75 786 aa12.41□□□□□ -0.42
USP40-205ENST00000430158 SEMA4GQ9NTN9 838 aa12.41□□□□□ -0.42
USP40-205ENST00000430158 IL17CQ9P0M4 197 aa12.41□□□□□ -0.42
USP40-205ENST00000430158 NFKBIL1Q9UBC1 381 aaPredicted RBP12.41□□□□□ -0.42
USP40-205ENST00000430158 SUSD2Q9UGT4 822 aa12.41□□□□□ -0.42
USP40-205ENST00000430158 SLC6A14Q9UN76 642 aa12.41□□□□□ -0.42
USP40-205ENST00000430158 SHOC2Q9UQ13 582 aa12.41□□□□□ -0.42
USP40-205ENST00000430158 MRFAP1Q9Y605 127 aa12.41□□□□□ -0.42
USP40-205ENST00000430158 SPTBN2O15020 2390 aa12.4□□□□□ -0.42
USP40-205ENST00000430158 C1orf232A0A0U1RR37 186 aa12.4□□□□□ -0.42
USP40-205ENST00000430158 A0A1B0GVT2 93 aa12.4□□□□□ -0.42
USP40-205ENST00000430158 RGSL1A5PLK6 1076 aa12.4□□□□□ -0.42
USP40-205ENST00000430158 PRR5-ARHGAP8B1AHC4 643 aa12.4□□□□□ -0.42
USP40-205ENST00000430158 K7ESM1 405 aa12.4□□□□□ -0.42
USP40-205ENST00000430158 LZTS3O60299 673 aaPredicted RBP12.4□□□□□ -0.42
USP40-205ENST00000430158 ECEL1O95672 775 aa12.4□□□□□ -0.42
USP40-205ENST00000430158 TPSB2P20231 275 aa12.4□□□□□ -0.42
USP40-205ENST00000430158 TEAD1P28347 426 aa12.4□□□□□ -0.42
USP40-205ENST00000430158 CD38P28907 300 aa12.4□□□□□ -0.42
USP40-205ENST00000430158 AKT2P31751 481 aa12.4□□□□□ -0.42
USP40-205ENST00000430158 HMGCLP35914 325 aa12.4□□□□□ -0.42
USP40-205ENST00000430158 PLA2G5P39877 138 aa12.4□□□□□ -0.42
USP40-205ENST00000430158 CTSKP43235 329 aa12.4□□□□□ -0.42
USP40-205ENST00000430158 AFF3P51826 1226 aaKnown RBP12.4□□□□□ -0.42
USP40-205ENST00000430158 OVGP1Q12889 678 aa12.4□□□□□ -0.42
USP40-205ENST00000430158 GPS1Q13098 491 aa12.4□□□□□ -0.42
USP40-205ENST00000430158 LRRC14Q15048 493 aa12.4□□□□□ -0.42
USP40-205ENST00000430158 ACOX1Q15067 660 aa12.4□□□□□ -0.42
USP40-205ENST00000430158 SF3A2Q15428 464 aaKnown RBP12.4□□□□□ -0.42
USP40-205ENST00000430158 TPSAB1Q15661 275 aa12.4□□□□□ -0.42
USP40-205ENST00000430158 KIF19Q2TAC6 998 aa12.4□□□□□ -0.42
USP40-205ENST00000430158 TRIM61Q5EBN2 209 aa12.4□□□□□ -0.42
USP40-205ENST00000430158 ANKRD22Q5VYY1 191 aa12.4□□□□□ -0.42
USP40-205ENST00000430158 ESRP1Q6NXG1 681 aaKnown RBP12.4□□□□□ -0.42
USP40-205ENST00000430158 KYAT3Q6YP21 454 aaKnown RBP12.4□□□□□ -0.42
USP40-205ENST00000430158 ZNF765Q7L2R6 523 aa12.4□□□□□ -0.42
USP40-205ENST00000430158 RABEPKQ7Z6M1 372 aa12.4□□□□□ -0.42
USP40-205ENST00000430158 KLHL7Q8IXQ5 586 aa12.4□□□□□ -0.42
USP40-205ENST00000430158 NRSN1Q8IZ57 195 aa12.4□□□□□ -0.42
USP40-205ENST00000430158 SLC22A18ASQ8N1D0 253 aa12.4□□□□□ -0.42
USP40-205ENST00000430158 PAF1Q8N7H5 531 aa12.4□□□□□ -0.42
USP40-205ENST00000430158 OR13H1Q8NG92 308 aa12.4□□□□□ -0.42
USP40-205ENST00000430158 OR52K1Q8NGK4 314 aa12.4□□□□□ -0.42
USP40-205ENST00000430158 GRK7Q8WTQ7 553 aa12.4□□□□□ -0.42
USP40-205ENST00000430158 SRPK1Q96SB4 655 aaKnown RBP12.4□□□□□ -0.42
USP40-205ENST00000430158 MYOCQ99972 504 aa12.4□□□□□ -0.42
USP40-205ENST00000430158 FSD1LQ9BXM9 530 aa12.4□□□□□ -0.42
USP40-205ENST00000430158 ZFYVE1Q9HBF4 777 aa12.4□□□□□ -0.42
USP40-205ENST00000430158 FSCN3Q9NQT6 498 aa12.4□□□□□ -0.42
USP40-205ENST00000430158 RXFP3Q9NSD7 469 aa12.4□□□□□ -0.42
USP40-205ENST00000430158 HACD3Q9P035 362 aa12.4□□□□□ -0.42
USP40-205ENST00000430158 NCDNQ9UBB6 729 aa12.4□□□□□ -0.42
USP40-205ENST00000430158 FEZ2Q9UHY8 353 aaPredicted RBP12.4□□□□□ -0.42
USP40-205ENST00000430158 CNOT6Q9ULM6 557 aaKnown RBP12.4□□□□□ -0.42
USP40-205ENST00000430158 KCTD3Q9Y597 815 aa12.4□□□□□ -0.42
USP40-205ENST00000430158 LNP1A1A4G5 178 aa12.39□□□□□ -0.43
USP40-205ENST00000430158 TLR4O00206 839 aa12.39□□□□□ -0.43
USP40-205ENST00000430158 GAPDHSO14556 408 aaPredicted RBP12.39□□□□□ -0.43
USP40-205ENST00000430158 LDB2O43679 373 aa12.39□□□□□ -0.43
USP40-205ENST00000430158 GFRA3O60609 400 aa12.39□□□□□ -0.43
USP40-205ENST00000430158 URI1O94763 535 aaPredicted RBP12.39□□□□□ -0.43
USP40-205ENST00000430158 TMEM63AO94886 807 aa12.39□□□□□ -0.43
USP40-205ENST00000430158 APRTP07741 180 aa12.39□□□□□ -0.43
USP40-205ENST00000430158 GNSP15586 552 aa12.39□□□□□ -0.43
USP40-205ENST00000430158 BPIP17213 487 aa12.39□□□□□ -0.43
USP40-205ENST00000430158 TPH1P17752 444 aa12.39□□□□□ -0.43
USP40-205ENST00000430158 ACTN2P35609 894 aa12.39□□□□□ -0.43
USP40-205ENST00000430158 VPS41P49754 854 aa12.39□□□□□ -0.43
USP40-205ENST00000430158 ZNF140P52738 457 aaPredicted RBP12.39□□□□□ -0.43
USP40-205ENST00000430158 NXPH1P58417 271 aa12.39□□□□□ -0.43
USP40-205ENST00000430158 CDK16Q00536 496 aa12.39□□□□□ -0.43
USP40-205ENST00000430158 ARHGEF7Q14155 803 aa12.39□□□□□ -0.43
USP40-205ENST00000430158 PTPRCAPQ14761 206 aa12.39□□□□□ -0.43
USP40-205ENST00000430158 TAF1AQ15573 450 aaPredicted RBP12.39□□□□□ -0.43
USP40-205ENST00000430158 WHAMMP3Q1A5X7 153 aa12.39□□□□□ -0.43
USP40-205ENST00000430158 HENMT1Q5T8I9 393 aaKnown RBP12.39□□□□□ -0.43
USP40-205ENST00000430158 RNASEH2BQ5TBB1 312 aaKnown RBP12.39□□□□□ -0.43
USP40-205ENST00000430158 CCDC70Q6NSX1 233 aa12.39□□□□□ -0.43
USP40-205ENST00000430158 Q6ZSR6 202 aa12.39□□□□□ -0.43
USP40-205ENST00000430158 SYDE1Q6ZW31 735 aaPredicted RBP12.39□□□□□ -0.43
USP40-205ENST00000430158 JAMLQ86YT9 394 aa12.39□□□□□ -0.43
USP40-205ENST00000430158 NAT8LQ8N9F0 302 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms