RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 TOR1BO14657 336 aa10.7□□□□□ -0.7
USP54-204ENST00000422491 NDUFB5O43674 189 aa10.7□□□□□ -0.7
USP54-204ENST00000422491 ERCC2P18074 760 aa10.7□□□□□ -0.7
USP54-204ENST00000422491 TKTP29401 623 aaKnown RBP10.7□□□□□ -0.7
USP54-204ENST00000422491 ALDH3A2P51648 485 aa10.7□□□□□ -0.7
USP54-204ENST00000422491 IFITM2Q01629 132 aa10.7□□□□□ -0.7
USP54-204ENST00000422491 POU5F1BQ06416 359 aa10.7□□□□□ -0.7
USP54-204ENST00000422491 BST2Q10589 180 aaKnown RBP10.7□□□□□ -0.7
USP54-204ENST00000422491 POLD3Q15054 466 aaPredicted RBP10.7□□□□□ -0.7
USP54-204ENST00000422491 OTUD3Q5T2D3 398 aaPredicted RBP10.7□□□□□ -0.7
USP54-204ENST00000422491 FAM72AQ5TYM5 149 aa10.7□□□□□ -0.7
USP54-204ENST00000422491 FAM72DQ6L9T8 149 aa10.7□□□□□ -0.7
USP54-204ENST00000422491 PKN3Q6P5Z2 889 aa10.7□□□□□ -0.7
USP54-204ENST00000422491 THAP5Q7Z6K1 395 aa10.7□□□□□ -0.7
USP54-204ENST00000422491 SLCO6A1Q86UG4 719 aa10.7□□□□□ -0.7
USP54-204ENST00000422491 FAM72BQ86X60 149 aa10.7□□□□□ -0.7
USP54-204ENST00000422491 NLGN1Q8N2Q7 840 aa10.7□□□□□ -0.7
USP54-204ENST00000422491 NPWQ8N729 165 aa10.7□□□□□ -0.7
USP54-204ENST00000422491 ATP6V0D2Q8N8Y2 350 aa10.7□□□□□ -0.7
USP54-204ENST00000422491 PIK3C3Q8NEB9 887 aa10.7□□□□□ -0.7
USP54-204ENST00000422491 BPIFB1Q8TDL5 484 aa10.7□□□□□ -0.7
USP54-204ENST00000422491 OSCP1Q8WVF1 389 aa10.7□□□□□ -0.7
USP54-204ENST00000422491 HDAC2Q92769 488 aaKnown RBP10.7□□□□□ -0.7
USP54-204ENST00000422491 PHF21BQ96EK2 531 aa10.7□□□□□ -0.7
USP54-204ENST00000422491 TRIM54Q9BYV2 358 aa10.7□□□□□ -0.7
USP54-204ENST00000422491 ADNPQ9H2P0 1102 aa10.7□□□□□ -0.7
USP54-204ENST00000422491 DPEP3Q9H4B8 488 aa10.7□□□□□ -0.7
USP54-204ENST00000422491 HPS4Q9NQG7 708 aa10.7□□□□□ -0.7
USP54-204ENST00000422491 FBXO8Q9NRD0 319 aa10.7□□□□□ -0.7
USP54-204ENST00000422491 TRHDEQ9UKU6 1024 aa10.7□□□□□ -0.7
USP54-204ENST00000422491 OAS3Q9Y6K5 1087 aaKnown RBP10.7□□□□□ -0.7
USP54-204ENST00000422491 SCN1AP35498 2009 aa10.7□□□□□ -0.7
USP54-204ENST00000422491 TPD52L2O43399 206 aaKnown RBP10.7□□□□□ -0.7
USP54-204ENST00000422491 HCRTO43612 131 aa10.7□□□□□ -0.7
USP54-204ENST00000422491 ALPLP05186 524 aa10.7□□□□□ -0.7
USP54-204ENST00000422491 BMP4P12644 408 aa10.7□□□□□ -0.7
USP54-204ENST00000422491 BDNFP23560 247 aa10.7□□□□□ -0.7
USP54-204ENST00000422491 APLP1P51693 650 aa10.7□□□□□ -0.7
USP54-204ENST00000422491 GP2P55259 537 aaKnown RBP10.7□□□□□ -0.7
USP54-204ENST00000422491 RABL3Q5HYI8 236 aa10.7□□□□□ -0.7
USP54-204ENST00000422491 NAPEPLDQ6IQ20 393 aa10.7□□□□□ -0.7
USP54-204ENST00000422491 KIAA0408Q6ZU52 694 aa10.7□□□□□ -0.7
USP54-204ENST00000422491 PHYKPLQ8IUZ5 450 aa10.7□□□□□ -0.7
USP54-204ENST00000422491 SEPT1Q8WYJ6 367 aa10.7□□□□□ -0.7
USP54-204ENST00000422491 NT5C3BQ969T7 300 aa10.7□□□□□ -0.7
USP54-204ENST00000422491 BDH2Q9BUT1 245 aa10.7□□□□□ -0.7
USP54-204ENST00000422491 DGCR6LQ9BY27 220 aa10.7□□□□□ -0.7
USP54-204ENST00000422491 PHIPQ8WWQ0 1821 aa10.7□□□□□ -0.7
USP54-204ENST00000422491 GMNNO75496 209 aa10.69□□□□□ -0.7
USP54-204ENST00000422491 MATN4O95460 622 aa10.69□□□□□ -0.7
USP54-204ENST00000422491 TCF3P15923 654 aa10.69□□□□□ -0.7
USP54-204ENST00000422491 TSPAN8P19075 237 aa10.69□□□□□ -0.7
USP54-204ENST00000422491 DNAJB2P25686 324 aa10.69□□□□□ -0.7
USP54-204ENST00000422491 BCAT1P54687 386 aa10.69□□□□□ -0.7
USP54-204ENST00000422491 GABARAPL2P60520 117 aa10.69□□□□□ -0.7
USP54-204ENST00000422491 POU4F1Q01851 419 aa10.69□□□□□ -0.7
USP54-204ENST00000422491 TNFAIP2Q03169 654 aa10.69□□□□□ -0.7
USP54-204ENST00000422491 CAMK2BQ13554 666 aa10.69□□□□□ -0.7
USP54-204ENST00000422491 CRY1Q16526 586 aa10.69□□□□□ -0.7
USP54-204ENST00000422491 COQ5Q5HYK3 327 aa10.69□□□□□ -0.7
USP54-204ENST00000422491 PCID2Q5JVF3 399 aa10.69□□□□□ -0.7
USP54-204ENST00000422491 ESRP1Q6NXG1 681 aaKnown RBP10.69□□□□□ -0.7
USP54-204ENST00000422491 IFNEQ86WN2 208 aa10.69□□□□□ -0.7
USP54-204ENST00000422491 SCML4Q8N228 414 aa10.69□□□□□ -0.7
USP54-204ENST00000422491 MIER2Q8N344 545 aa10.69□□□□□ -0.7
USP54-204ENST00000422491 C2CD4AQ8NCU7 369 aaPredicted RBP10.69□□□□□ -0.7
USP54-204ENST00000422491 ZNF280CQ8ND82 737 aa10.69□□□□□ -0.7
USP54-204ENST00000422491 TRAPPC12Q8WVT3 735 aa10.69□□□□□ -0.7
USP54-204ENST00000422491 NDRG1Q92597 394 aaKnown RBP10.69□□□□□ -0.7
USP54-204ENST00000422491 HDAC11Q96DB2 347 aa10.69□□□□□ -0.7
USP54-204ENST00000422491 TRMOQ9BU70 441 aa10.69□□□□□ -0.7
USP54-204ENST00000422491 CHID1Q9BWS9 393 aa10.69□□□□□ -0.7
USP54-204ENST00000422491 PCDH12Q9NPG4 1184 aa10.69□□□□□ -0.7
USP54-204ENST00000422491 GIMAP2Q9UG22 337 aa10.69□□□□□ -0.7
USP54-204ENST00000422491 BAG5Q9UL15 447 aa10.69□□□□□ -0.7
USP54-204ENST00000422491 PCDHGA8Q9Y5G5 932 aa10.69□□□□□ -0.7
USP54-204ENST00000422491 SYNJ2BP-COX16A0A087WUM0 186 aa10.69□□□□□ -0.7
USP54-204ENST00000422491 C16orf96A6NNT2 1141 aa10.69□□□□□ -0.7
USP54-204ENST00000422491 AP3B1O00203 1094 aa10.69□□□□□ -0.7
USP54-204ENST00000422491 AURKAO14965 403 aa10.69□□□□□ -0.7
USP54-204ENST00000422491 NCAM2O15394 837 aa10.69□□□□□ -0.7
USP54-204ENST00000422491 PRSS23O95084 383 aa10.69□□□□□ -0.7
USP54-204ENST00000422491 GABARAPO95166 117 aa10.69□□□□□ -0.7
USP54-204ENST00000422491 THRBP10828 461 aa10.69□□□□□ -0.7
USP54-204ENST00000422491 CPB1P15086 417 aa10.69□□□□□ -0.7
USP54-204ENST00000422491 ITIH1P19827 911 aa10.69□□□□□ -0.7
USP54-204ENST00000422491 IMPDH1P20839 514 aa10.69□□□□□ -0.7
USP54-204ENST00000422491 PCMT1P22061 227 aa10.69□□□□□ -0.7
USP54-204ENST00000422491 ADORA2BP29275 332 aa10.69□□□□□ -0.7
USP54-204ENST00000422491 LIPEQ05469 1076 aa10.69□□□□□ -0.7
USP54-204ENST00000422491 PIGFQ07326 219 aa10.69□□□□□ -0.7
USP54-204ENST00000422491 DAG1Q14118 895 aa10.69□□□□□ -0.7
USP54-204ENST00000422491 AMHR2Q16671 573 aa10.69□□□□□ -0.7
USP54-204ENST00000422491 GEN1Q17RS7 908 aa10.69□□□□□ -0.7
USP54-204ENST00000422491 RBM20Q5T481 1227 aaKnown RBP10.69□□□□□ -0.7
USP54-204ENST00000422491 CATSPER4Q7RTX7 472 aa10.69□□□□□ -0.7
USP54-204ENST00000422491 RNF135Q8IUD6 432 aa10.69□□□□□ -0.7
USP54-204ENST00000422491 RIMKLAQ8IXN7 391 aa10.69□□□□□ -0.7
USP54-204ENST00000422491 KLHDC8BQ8IXV7 354 aa10.69□□□□□ -0.7
USP54-204ENST00000422491 DCP1BQ8IZD4 617 aaKnown RBP10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms