RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 LBRQ14739 615 aaKnown RBP8.09□□□□□ -1.11
VIM-202ENST00000421459 SNAP47Q5SQN1 464 aa8.09□□□□□ -1.11
VIM-202ENST00000421459 FKBP15Q5T1M5 1219 aa8.09□□□□□ -1.11
VIM-202ENST00000421459 ZNF438Q7Z4V0 828 aa8.09□□□□□ -1.11
VIM-202ENST00000421459 IRF2BP2Q7Z5L9 587 aa8.09□□□□□ -1.11
VIM-202ENST00000421459 UNC5BQ8IZJ1 945 aa8.09□□□□□ -1.11
VIM-202ENST00000421459 CBARPQ8N350 705 aaPredicted RBP8.09□□□□□ -1.11
VIM-202ENST00000421459 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP8.09□□□□□ -1.11
VIM-202ENST00000421459 ZSCAN1Q8NBB4 408 aa8.09□□□□□ -1.11
VIM-202ENST00000421459 TMEM159Q96B96 161 aa8.09□□□□□ -1.11
VIM-202ENST00000421459 TAAR9Q96RI9 348 aa8.09□□□□□ -1.11
VIM-202ENST00000421459 AGAP2Q99490 1192 aa8.09□□□□□ -1.11
VIM-202ENST00000421459 TEX101Q9BY14 249 aa8.09□□□□□ -1.11
VIM-202ENST00000421459 SLC25A18Q9H1K4 315 aa8.09□□□□□ -1.11
VIM-202ENST00000421459 NOD2Q9HC29 1040 aa8.09□□□□□ -1.11
VIM-202ENST00000421459 ZNF71Q9NQZ8 489 aaPredicted RBP8.09□□□□□ -1.11
VIM-202ENST00000421459 GEMIN8Q9NWZ8 242 aaKnown RBP8.09□□□□□ -1.11
VIM-202ENST00000421459 PRKAB1Q9Y478 270 aa8.09□□□□□ -1.11
VIM-202ENST00000421459 CHD5Q8TDI0 1954 aa8.09□□□□□ -1.11
VIM-202ENST00000421459 LRP4O75096 1905 aa8.09□□□□□ -1.11
VIM-202ENST00000421459 NBPF19A0A087WUL8 3843 aa8.08□□□□□ -1.12
VIM-202ENST00000421459 IGHV1OR21-1A0A087WYE8 117 aa8.08□□□□□ -1.12
VIM-202ENST00000421459 TMEM191CA6NGB0 347 aa8.08□□□□□ -1.12
VIM-202ENST00000421459 EFCAB7A8K855 629 aa8.08□□□□□ -1.12
VIM-202ENST00000421459 STMND1H3BQB6 276 aa8.08□□□□□ -1.12
VIM-202ENST00000421459 HTRA2O43464 458 aaPredicted RBP8.08□□□□□ -1.12
VIM-202ENST00000421459 PPFIA2O75334 1257 aa8.08□□□□□ -1.12
VIM-202ENST00000421459 SOD1P00441 154 aa8.08□□□□□ -1.12
VIM-202ENST00000421459 PDHA1P08559 390 aa8.08□□□□□ -1.12
VIM-202ENST00000421459 PRKAR1AP10644 381 aa8.08□□□□□ -1.12
VIM-202ENST00000421459 CR2P20023 1033 aa8.08□□□□□ -1.12
VIM-202ENST00000421459 IL1R2P27930 398 aa8.08□□□□□ -1.12
VIM-202ENST00000421459 ANP32AP39687 249 aaKnown RBP8.08□□□□□ -1.12
VIM-202ENST00000421459 ACTR1BP42025 376 aa8.08□□□□□ -1.12
VIM-202ENST00000421459 LIMK2P53671 638 aa8.08□□□□□ -1.12
VIM-202ENST00000421459 AIF1P55008 147 aa8.08□□□□□ -1.12
VIM-202ENST00000421459 POLE2P56282 527 aa8.08□□□□□ -1.12
VIM-202ENST00000421459 ACTR1AP61163 376 aa8.08□□□□□ -1.12
VIM-202ENST00000421459 POLR2LP62875 67 aaKnown RBP8.08□□□□□ -1.12
VIM-202ENST00000421459 CDK3Q00526 305 aa8.08□□□□□ -1.12
VIM-202ENST00000421459 ILF3Q12906 894 aaKnown RBP eCLIP8.08□□□□□ -1.12
VIM-202ENST00000421459 DPYSQ14117 519 aa8.08□□□□□ -1.12
VIM-202ENST00000421459 IHHQ14623 411 aa8.08□□□□□ -1.12
VIM-202ENST00000421459 NR1D2Q14995 579 aa8.08□□□□□ -1.12
VIM-202ENST00000421459 SMTNL2Q2TAL5 461 aa8.08□□□□□ -1.12
VIM-202ENST00000421459 ATP1A1-AS1Q5TC04 95 aa8.08□□□□□ -1.12
VIM-202ENST00000421459 ANKS6Q68DC2 871 aa8.08□□□□□ -1.12
VIM-202ENST00000421459 TXNRD3NBQ6F5E7 133 aa8.08□□□□□ -1.12
VIM-202ENST00000421459 RAET1GQ6H3X3 334 aa8.08□□□□□ -1.12
VIM-202ENST00000421459 PLEKHA7Q6IQ23 1121 aa8.08□□□□□ -1.12
VIM-202ENST00000421459 APTXQ7Z2E3 356 aaKnown RBP8.08□□□□□ -1.12
VIM-202ENST00000421459 FAM129CQ86XR2 697 aa8.08□□□□□ -1.12
VIM-202ENST00000421459 NRSN1Q8IZ57 195 aa8.08□□□□□ -1.12
VIM-202ENST00000421459 CACNA2D3Q8IZS8 1091 aa8.08□□□□□ -1.12
VIM-202ENST00000421459 IL22RA1Q8N6P7 574 aa8.08□□□□□ -1.12
VIM-202ENST00000421459 KIAA1524Q8TCG1 905 aa8.08□□□□□ -1.12
VIM-202ENST00000421459 LRRN4Q8WUT4 740 aa8.08□□□□□ -1.12
VIM-202ENST00000421459 SCAMP4Q969E2 229 aa8.08□□□□□ -1.12
VIM-202ENST00000421459 DTD2Q96FN9 168 aa8.08□□□□□ -1.12
VIM-202ENST00000421459 PSKH2Q96QS6 385 aa8.08□□□□□ -1.12
VIM-202ENST00000421459 SEMA3CQ99985 751 aa8.08□□□□□ -1.12
VIM-202ENST00000421459 SYT11Q9BT88 431 aa8.08□□□□□ -1.12
VIM-202ENST00000421459 GSDMCQ9BYG8 508 aa8.08□□□□□ -1.12
VIM-202ENST00000421459 EPN3Q9H201 632 aa8.08□□□□□ -1.12
VIM-202ENST00000421459 ABCG8Q9H221 673 aa8.08□□□□□ -1.12
VIM-202ENST00000421459 HSD3B7Q9H2F3 369 aa8.08□□□□□ -1.12
VIM-202ENST00000421459 APMAPQ9HDC9 416 aa8.08□□□□□ -1.12
VIM-202ENST00000421459 PHPT1Q9NRX4 125 aaPredicted RBP8.08□□□□□ -1.12
VIM-202ENST00000421459 SLC39A1Q9NY26 324 aa8.08□□□□□ -1.12
VIM-202ENST00000421459 SEPT3Q9UH03 358 aa8.08□□□□□ -1.12
VIM-202ENST00000421459 LIMA1Q9UHB6 759 aaKnown RBP8.08□□□□□ -1.12
VIM-202ENST00000421459 LRRK1Q38SD2 2015 aa8.08□□□□□ -1.12
VIM-202ENST00000421459 ANKRD36A6QL64 1941 aa8.07□□□□□ -1.12
VIM-202ENST00000421459 MAST4O15021 2626 aa8.07□□□□□ -1.12
VIM-202ENST00000421459 LOC101059948A0A1B0GTJ6 334 aa8.07□□□□□ -1.12
VIM-202ENST00000421459 LGALS16A8MUM7 142 aa8.07□□□□□ -1.12
VIM-202ENST00000421459 IQCJ-SCHIP1C9J366 451 aaPredicted RBP8.07□□□□□ -1.12
VIM-202ENST00000421459 INPP4BO15327 924 aa8.07□□□□□ -1.12
VIM-202ENST00000421459 PRPSAP2O60256 369 aa8.07□□□□□ -1.12
VIM-202ENST00000421459 RAD1O60671 282 aa8.07□□□□□ -1.12
VIM-202ENST00000421459 MAFKO60675 156 aa8.07□□□□□ -1.12
VIM-202ENST00000421459 LRCH4O75427 683 aa8.07□□□□□ -1.12
VIM-202ENST00000421459 MAP3K6O95382 1288 aa8.07□□□□□ -1.12
VIM-202ENST00000421459 TPM2P07951 284 aa8.07□□□□□ -1.12
VIM-202ENST00000421459 THRAP10827 490 aa8.07□□□□□ -1.12
VIM-202ENST00000421459 ATP1A3P13637 1013 aa8.07□□□□□ -1.12
VIM-202ENST00000421459 HTR7P34969 479 aa8.07□□□□□ -1.12
VIM-202ENST00000421459 GPR1P46091 355 aa8.07□□□□□ -1.12
VIM-202ENST00000421459 PPM1FP49593 454 aaPredicted RBP8.07□□□□□ -1.12
VIM-202ENST00000421459 AP1S1P61966 158 aa8.07□□□□□ -1.12
VIM-202ENST00000421459 PTSQ03393 145 aa8.07□□□□□ -1.12
VIM-202ENST00000421459 KCNAB2Q13303 367 aa8.07□□□□□ -1.12
VIM-202ENST00000421459 BIRC2Q13490 618 aa8.07□□□□□ -1.12
VIM-202ENST00000421459 ZNF235Q14590 738 aa8.07□□□□□ -1.12
VIM-202ENST00000421459 RFTN1Q14699 578 aaPredicted RBP8.07□□□□□ -1.12
VIM-202ENST00000421459 TMCO4Q5TGY1 634 aa8.07□□□□□ -1.12
VIM-202ENST00000421459 TMEM164Q5U3C3 297 aa8.07□□□□□ -1.12
VIM-202ENST00000421459 E4F1Q66K89 784 aaPredicted RBP8.07□□□□□ -1.12
VIM-202ENST00000421459 BORAQ6PGQ7 559 aa8.07□□□□□ -1.12
VIM-202ENST00000421459 XKR5Q6UX68 686 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms