RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 PPP1R2P1Q96PQ5 205 aa12.47□□□□□ -0.41
SKA1-203ENST00000417656 NAP1L3Q99457 506 aaPredicted RBP12.47□□□□□ -0.41
SKA1-203ENST00000417656 CAAP1Q9H8G2 361 aa12.47□□□□□ -0.41
SKA1-203ENST00000417656 DNAAF2Q9NVR5 837 aaKnown RBP12.47□□□□□ -0.41
SKA1-203ENST00000417656 GOLGA6AQ9NYA3 693 aa12.47□□□□□ -0.41
SKA1-203ENST00000417656 AAR2Q9Y312 384 aaKnown RBP12.47□□□□□ -0.41
SKA1-203ENST00000417656 OR1A2Q9Y585 309 aa12.47□□□□□ -0.41
SKA1-203ENST00000417656 CFAP54Q96N23 3096 aa12.47□□□□□ -0.41
SKA1-203ENST00000417656 ZNF106Q9H2Y7 1883 aaKnown RBP12.46□□□□□ -0.41
SKA1-203ENST00000417656 CEP250Q9BV73 2442 aa12.46□□□□□ -0.41
SKA1-203ENST00000417656 A0A1B0GTQ1 180 aa12.46□□□□□ -0.41
SKA1-203ENST00000417656 CTAGE9A4FU28 777 aa12.46□□□□□ -0.41
SKA1-203ENST00000417656 SLC30A4O14863 429 aa12.46□□□□□ -0.41
SKA1-203ENST00000417656 AURKAO14965 403 aa12.46□□□□□ -0.41
SKA1-203ENST00000417656 EPOP01588 193 aa12.46□□□□□ -0.41
SKA1-203ENST00000417656 STIP1P31948 543 aaKnown RBP12.46□□□□□ -0.41
SKA1-203ENST00000417656 ADRA1AP35348 466 aa12.46□□□□□ -0.41
SKA1-203ENST00000417656 ACTN2P35609 894 aa12.46□□□□□ -0.41
SKA1-203ENST00000417656 THOP1P52888 689 aa12.46□□□□□ -0.41
SKA1-203ENST00000417656 FZD2Q14332 565 aa12.46□□□□□ -0.41
SKA1-203ENST00000417656 INPP5AQ14642 412 aa12.46□□□□□ -0.41
SKA1-203ENST00000417656 SHBQ15464 509 aa12.46□□□□□ -0.41
SKA1-203ENST00000417656 PAPD7Q5XG87 772 aaKnown RBP12.46□□□□□ -0.41
SKA1-203ENST00000417656 TTC27Q6P3X3 843 aa12.46□□□□□ -0.41
SKA1-203ENST00000417656 GSTA5Q7RTV2 222 aa12.46□□□□□ -0.41
SKA1-203ENST00000417656 TECPR1Q7Z6L1 1165 aa12.46□□□□□ -0.41
SKA1-203ENST00000417656 MAGOHBQ96A72 148 aaKnown RBP12.46□□□□□ -0.41
SKA1-203ENST00000417656 EID2BQ96D98 161 aa12.46□□□□□ -0.41
SKA1-203ENST00000417656 CAPZA3Q96KX2 299 aa12.46□□□□□ -0.41
SKA1-203ENST00000417656 ELF4Q99607 663 aaPredicted RBP12.46□□□□□ -0.41
SKA1-203ENST00000417656 TBL1YQ9BQ87 522 aa12.46□□□□□ -0.41
SKA1-203ENST00000417656 GPR63Q9BZJ6 419 aa12.46□□□□□ -0.41
SKA1-203ENST00000417656 ABCG8Q9H221 673 aa12.46□□□□□ -0.41
SKA1-203ENST00000417656 ZFYVE1Q9HBF4 777 aa12.46□□□□□ -0.41
SKA1-203ENST00000417656 MAGEE1Q9HCI5 957 aa12.46□□□□□ -0.41
SKA1-203ENST00000417656 TM7SF3Q9NS93 570 aa12.46□□□□□ -0.41
SKA1-203ENST00000417656 HOMER3Q9NSC5 361 aa12.46□□□□□ -0.41
SKA1-203ENST00000417656 GOLGA6L10A0A0M3HER8 536 aa12.45□□□□□ -0.42
SKA1-203ENST00000417656 SDC3O75056 442 aa12.45□□□□□ -0.42
SKA1-203ENST00000417656 PHF2O75151 1096 aa12.45□□□□□ -0.42
SKA1-203ENST00000417656 AP2A1O95782 977 aa12.45□□□□□ -0.42
SKA1-203ENST00000417656 EPHA8P29322 1005 aaPredicted RBP12.45□□□□□ -0.42
SKA1-203ENST00000417656 RPL22P35268 128 aaKnown RBP12.45□□□□□ -0.42
SKA1-203ENST00000417656 SPINT3P49223 89 aa12.45□□□□□ -0.42
SKA1-203ENST00000417656 NFATC4Q14934 902 aa12.45□□□□□ -0.42
SKA1-203ENST00000417656 CYP1B1Q16678 543 aa12.45□□□□□ -0.42
SKA1-203ENST00000417656 ZNF542PQ5EBM4 170 aa12.45□□□□□ -0.42
SKA1-203ENST00000417656 ALS2CLQ60I27 953 aa12.45□□□□□ -0.42
SKA1-203ENST00000417656 KCTD11Q693B1 232 aa12.45□□□□□ -0.42
SKA1-203ENST00000417656 RAET1GQ6H3X3 334 aa12.45□□□□□ -0.42
SKA1-203ENST00000417656 RANBP10Q6VN20 620 aa12.45□□□□□ -0.42
SKA1-203ENST00000417656 MACC1Q6ZN28 852 aa12.45□□□□□ -0.42
SKA1-203ENST00000417656 NYAP1Q6ZVC0 841 aa12.45□□□□□ -0.42
SKA1-203ENST00000417656 ZNF765Q7L2R6 523 aa12.45□□□□□ -0.42
SKA1-203ENST00000417656 GLT6D1Q7Z4J2 308 aa12.45□□□□□ -0.42
SKA1-203ENST00000417656 PARGQ86W56 976 aa12.45□□□□□ -0.42
SKA1-203ENST00000417656 HEATR4Q86WZ0 1026 aa12.45□□□□□ -0.42
SKA1-203ENST00000417656 TTC30BQ8N4P2 665 aa12.45□□□□□ -0.42
SKA1-203ENST00000417656 OXR1Q8N573 874 aa12.45□□□□□ -0.42
SKA1-203ENST00000417656 CCHCR1Q8TD31 782 aa12.45□□□□□ -0.42
SKA1-203ENST00000417656 BLOC1S5Q8TDH9 187 aa12.45□□□□□ -0.42
SKA1-203ENST00000417656 SCAMP4Q969E2 229 aa12.45□□□□□ -0.42
SKA1-203ENST00000417656 FUBP1Q96AE4 644 aaKnown RBP12.45□□□□□ -0.42
SKA1-203ENST00000417656 AP2M1Q96CW1 435 aa12.45□□□□□ -0.42
SKA1-203ENST00000417656 APOOQ9BUR5 198 aa12.45□□□□□ -0.42
SKA1-203ENST00000417656 WDR26Q9H7D7 661 aa12.45□□□□□ -0.42
SKA1-203ENST00000417656 LRRC40Q9H9A6 602 aa12.45□□□□□ -0.42
SKA1-203ENST00000417656 ERVMER34-1Q9H9K5 563 aa12.45□□□□□ -0.42
SKA1-203ENST00000417656 ETNK1Q9HBU6 452 aa12.45□□□□□ -0.42
SKA1-203ENST00000417656 DNAJC28Q9NX36 388 aa12.45□□□□□ -0.42
SKA1-203ENST00000417656 PKD2L2Q9NZM6 624 aa12.45□□□□□ -0.42
SKA1-203ENST00000417656 PAK5Q9P286 719 aa12.45□□□□□ -0.42
SKA1-203ENST00000417656 DRG1Q9Y295 367 aaKnown RBP12.45□□□□□ -0.42
SKA1-203ENST00000417656 ASCC3Q8N3C0 2202 aaKnown RBP12.44□□□□□ -0.42
SKA1-203ENST00000417656 SPTY2D1-AS1A0A0U1RR47 76 aa12.44□□□□□ -0.42
SKA1-203ENST00000417656 TOR1BO14657 336 aa12.44□□□□□ -0.42
SKA1-203ENST00000417656 SOD1P00441 154 aa12.44□□□□□ -0.42
SKA1-203ENST00000417656 ZNF883P0CG24 379 aa12.44□□□□□ -0.42
SKA1-203ENST00000417656 CD59P13987 128 aa12.44□□□□□ -0.42
SKA1-203ENST00000417656 TSHRP16473 764 aa12.44□□□□□ -0.42
SKA1-203ENST00000417656 FDFT1P37268 417 aa12.44□□□□□ -0.42
SKA1-203ENST00000417656 ARRB1P49407 418 aaPredicted RBP12.44□□□□□ -0.42
SKA1-203ENST00000417656 VPS41P49754 854 aa12.44□□□□□ -0.42
SKA1-203ENST00000417656 KIAA1024LP59773 190 aa12.44□□□□□ -0.42
SKA1-203ENST00000417656 YPEL5P62699 121 aa12.44□□□□□ -0.42
SKA1-203ENST00000417656 EIF2B5Q13144 721 aaKnown RBP12.44□□□□□ -0.42
SKA1-203ENST00000417656 SEMA5AQ13591 1074 aa12.44□□□□□ -0.42
SKA1-203ENST00000417656 DENND5AQ6IQ26 1287 aa12.44□□□□□ -0.42
SKA1-203ENST00000417656 PNCKQ6P2M8 343 aa12.44□□□□□ -0.42
SKA1-203ENST00000417656 SYT10Q6XYQ8 523 aa12.44□□□□□ -0.42
SKA1-203ENST00000417656 TMC3Q7Z5M5 1100 aa12.44□□□□□ -0.42
SKA1-203ENST00000417656 GATAD2AQ86YP4 633 aa12.44□□□□□ -0.42
SKA1-203ENST00000417656 DCP2Q8IU60 420 aaKnown RBP12.44□□□□□ -0.42
SKA1-203ENST00000417656 LRRC45Q96CN5 670 aa12.44□□□□□ -0.42
SKA1-203ENST00000417656 SRPK1Q96SB4 655 aaKnown RBP12.44□□□□□ -0.42
SKA1-203ENST00000417656 AGAP2Q99490 1192 aa12.44□□□□□ -0.42
SKA1-203ENST00000417656 RIOK2Q9BVS4 552 aaKnown RBP12.44□□□□□ -0.42
SKA1-203ENST00000417656 RAB6BQ9NRW1 208 aa12.44□□□□□ -0.42
SKA1-203ENST00000417656 PIH1D1Q9NWS0 290 aaKnown RBP12.44□□□□□ -0.42
SKA1-203ENST00000417656 KCTD5Q9NXV2 234 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms