RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 MAGEA12P43365 314 aa13.38□□□□□ -0.27
VPS54-203ENST00000409558 PPP1R8Q12972 351 aaKnown RBP13.38□□□□□ -0.27
VPS54-203ENST00000409558 DBN1Q16643 649 aa13.38□□□□□ -0.27
VPS54-203ENST00000409558 TMCO4Q5TGY1 634 aa13.38□□□□□ -0.27
VPS54-203ENST00000409558 REP15Q6BDI9 236 aa13.38□□□□□ -0.27
VPS54-203ENST00000409558 FUT10Q6P4F1 479 aa13.38□□□□□ -0.27
VPS54-203ENST00000409558 ISCA2Q86U28 154 aa13.38□□□□□ -0.27
VPS54-203ENST00000409558 PKMYT1Q99640 499 aa13.38□□□□□ -0.27
VPS54-203ENST00000409558 USP22Q9UPT9 525 aa13.38□□□□□ -0.27
VPS54-203ENST00000409558 USP34Q70CQ2 3546 aa13.38□□□□□ -0.27
VPS54-203ENST00000409558 H0Y626 953 aa13.38□□□□□ -0.27
VPS54-203ENST00000409558 TRIM16O95361 564 aa13.38□□□□□ -0.27
VPS54-203ENST00000409558 RHOCP08134 193 aa13.38□□□□□ -0.27
VPS54-203ENST00000409558 MTHFD1P11586 935 aaKnown RBP13.38□□□□□ -0.27
VPS54-203ENST00000409558 OXCT1P55809 520 aa13.38□□□□□ -0.27
VPS54-203ENST00000409558 RNF219Q5W0B1 726 aaPredicted RBP13.38□□□□□ -0.27
VPS54-203ENST00000409558 SPPL2CQ8IUH8 684 aa13.38□□□□□ -0.27
VPS54-203ENST00000409558 ST13P4Q8IZP2 240 aaPredicted RBP13.38□□□□□ -0.27
VPS54-203ENST00000409558 AFAP1L2Q8N4X5 818 aa13.38□□□□□ -0.27
VPS54-203ENST00000409558 STK39Q9UEW8 545 aa13.38□□□□□ -0.27
VPS54-203ENST00000409558 AP4B1Q9Y6B7 739 aa13.38□□□□□ -0.27
VPS54-203ENST00000409558 A0A1W2PQ67 120 aa13.38□□□□□ -0.27
VPS54-203ENST00000409558 KRT87PA6NCN2 255 aa13.38□□□□□ -0.27
VPS54-203ENST00000409558 PRORSD1PA6NEY8 169 aa13.38□□□□□ -0.27
VPS54-203ENST00000409558 TRPC5OSA6NMA1 111 aa13.38□□□□□ -0.27
VPS54-203ENST00000409558 H3BNX3 289 aa13.38□□□□□ -0.27
VPS54-203ENST00000409558 MAPK10P53779 464 aa13.38□□□□□ -0.27
VPS54-203ENST00000409558 POM121L1PQ3SYA9 428 aa13.38□□□□□ -0.27
VPS54-203ENST00000409558 RARS2Q5T160 578 aaKnown RBP13.38□□□□□ -0.27
VPS54-203ENST00000409558 MRNIPQ6NTE8 343 aa13.38□□□□□ -0.27
VPS54-203ENST00000409558 UGT3A1Q6NUS8 523 aa13.38□□□□□ -0.27
VPS54-203ENST00000409558 PGM2L1Q6PCE3 622 aa13.38□□□□□ -0.27
VPS54-203ENST00000409558 PDSS2Q86YH6 399 aa13.38□□□□□ -0.27
VPS54-203ENST00000409558 PIANPQ8IYJ0 282 aa13.38□□□□□ -0.27
VPS54-203ENST00000409558 CPNE9Q8IYJ1 553 aa13.38□□□□□ -0.27
VPS54-203ENST00000409558 ARRDC2Q8TBH0 407 aa13.38□□□□□ -0.27
VPS54-203ENST00000409558 SCUBE2Q9NQ36 999 aa13.38□□□□□ -0.27
VPS54-203ENST00000409558 IKZF3Q9UKT9 509 aa13.38□□□□□ -0.27
VPS54-203ENST00000409558 RPL26L1Q9UNX3 145 aaKnown RBP13.38□□□□□ -0.27
VPS54-203ENST00000409558 C15orf38-AP3S2A0A0A6YYH1 394 aa13.37□□□□□ -0.27
VPS54-203ENST00000409558 CA12O43570 354 aa13.37□□□□□ -0.27
VPS54-203ENST00000409558 LDB2O43679 373 aa13.37□□□□□ -0.27
VPS54-203ENST00000409558 IGLV3-25P01717 112 aa13.37□□□□□ -0.27
VPS54-203ENST00000409558 CORO1AP31146 461 aaKnown RBP13.37□□□□□ -0.27
VPS54-203ENST00000409558 KPNA2P52292 529 aaKnown RBP13.37□□□□□ -0.27
VPS54-203ENST00000409558 NRG1Q02297 640 aaPredicted RBP13.37□□□□□ -0.27
VPS54-203ENST00000409558 PLOD1Q02809 727 aaPredicted RBP13.37□□□□□ -0.27
VPS54-203ENST00000409558 OR52E8Q6IFG1 317 aa13.37□□□□□ -0.27
VPS54-203ENST00000409558 PSAPL1Q6NUJ1 521 aa13.37□□□□□ -0.27
VPS54-203ENST00000409558 ARPINQ7Z6K5 226 aa13.37□□□□□ -0.27
VPS54-203ENST00000409558 MILR1Q7Z6M3 343 aa13.37□□□□□ -0.27
VPS54-203ENST00000409558 RAB44Q7Z6P3 723 aaPredicted RBP13.37□□□□□ -0.27
VPS54-203ENST00000409558 GRIN3AQ8TCU5 1115 aa13.37□□□□□ -0.27
VPS54-203ENST00000409558 C19orf60Q96EN9 201 aa13.37□□□□□ -0.27
VPS54-203ENST00000409558 NSMCE3Q96MG7 304 aa13.37□□□□□ -0.27
VPS54-203ENST00000409558 VCX3BQ9H321 246 aa13.37□□□□□ -0.27
VPS54-203ENST00000409558 SOX17Q9H6I2 414 aaPredicted RBP13.37□□□□□ -0.27
VPS54-203ENST00000409558 EML4Q9HC35 981 aaKnown RBP13.37□□□□□ -0.27
VPS54-203ENST00000409558 HACD3Q9P035 362 aa13.37□□□□□ -0.27
VPS54-203ENST00000409558 VPS28Q9UK41 221 aa13.37□□□□□ -0.27
VPS54-203ENST00000409558 GON4LQ3T8J9 2241 aa13.37□□□□□ -0.27
VPS54-203ENST00000409558 STAMBPO95630 424 aa13.37□□□□□ -0.27
VPS54-203ENST00000409558 MYL4P12829 197 aa13.37□□□□□ -0.27
VPS54-203ENST00000409558 PCSK9Q8NBP7 692 aaKnown RBP13.37□□□□□ -0.27
VPS54-203ENST00000409558 TMEM74Q96NL1 305 aa13.37□□□□□ -0.27
VPS54-203ENST00000409558 SIKE1Q9BRV8 207 aa13.37□□□□□ -0.27
VPS54-203ENST00000409558 EPS15L1Q9UBC2 864 aa13.37□□□□□ -0.27
VPS54-203ENST00000409558 RAD54BQ9Y620 910 aa13.37□□□□□ -0.27
VPS54-203ENST00000409558 STX7O15400 261 aaKnown RBP13.37□□□□□ -0.27
VPS54-203ENST00000409558 CLASP2O75122 1294 aaKnown RBP13.37□□□□□ -0.27
VPS54-203ENST00000409558 PEX11BO96011 259 aa13.37□□□□□ -0.27
VPS54-203ENST00000409558 CYP11A1P05108 521 aa13.37□□□□□ -0.27
VPS54-203ENST00000409558 PCNAP12004 261 aa13.37□□□□□ -0.27
VPS54-203ENST00000409558 UQCRBP14927 111 aa13.37□□□□□ -0.27
VPS54-203ENST00000409558 SP3Q02447 781 aa13.37□□□□□ -0.27
VPS54-203ENST00000409558 DSC3Q14574 896 aa13.37□□□□□ -0.27
VPS54-203ENST00000409558 SLC30A9Q6PML9 568 aa13.37□□□□□ -0.27
VPS54-203ENST00000409558 FAM151BQ6UXP7 276 aa13.37□□□□□ -0.27
VPS54-203ENST00000409558 FBXO39Q8N4B4 442 aa13.37□□□□□ -0.27
VPS54-203ENST00000409558 CDKN2AIPNLQ96HQ2 116 aa13.37□□□□□ -0.27
VPS54-203ENST00000409558 STN1Q9H668 368 aaKnown RBP13.37□□□□□ -0.27
VPS54-203ENST00000409558 UBA2Q9UBT2 640 aaPredicted RBP13.37□□□□□ -0.27
VPS54-203ENST00000409558 SCML2Q9UQR0 700 aa13.37□□□□□ -0.27
VPS54-203ENST00000409558 A0A087X1B8 175 aa13.36□□□□□ -0.27
VPS54-203ENST00000409558 A0A0J9YYE9 177 aa13.36□□□□□ -0.27
VPS54-203ENST00000409558 KIF3CO14782 793 aa13.36□□□□□ -0.27
VPS54-203ENST00000409558 ANGPT2O15123 496 aa13.36□□□□□ -0.27
VPS54-203ENST00000409558 KPNA6O60684 536 aa13.36□□□□□ -0.27
VPS54-203ENST00000409558 PRAMEF12O95522 483 aa13.36□□□□□ -0.27
VPS54-203ENST00000409558 RBP1P09455 135 aa13.36□□□□□ -0.27
VPS54-203ENST00000409558 CYP2C18P33260 490 aa13.36□□□□□ -0.27
VPS54-203ENST00000409558 ATP5C1P36542 298 aaKnown RBP13.36□□□□□ -0.27
VPS54-203ENST00000409558 GDF5P43026 501 aa13.36□□□□□ -0.27
VPS54-203ENST00000409558 CDKL1Q00532 357 aa13.36□□□□□ -0.27
VPS54-203ENST00000409558 COL9A2Q14055 689 aaPredicted RBP13.36□□□□□ -0.27
VPS54-203ENST00000409558 ZNF423Q2M1K9 1284 aa13.36□□□□□ -0.27
VPS54-203ENST00000409558 MANEALQ5VSG8 457 aa13.36□□□□□ -0.27
VPS54-203ENST00000409558 RALGPS2Q86X27 583 aaPredicted RBP13.36□□□□□ -0.27
VPS54-203ENST00000409558 TWIST2Q8WVJ9 160 aa13.36□□□□□ -0.27
VPS54-203ENST00000409558 GATA6Q92908 595 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms