RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 PCED1BQ96HM7 432 aa7.31□□□□□ -1.24
SCN9A-202ENST00000409435 NSL1Q96IY1 281 aa7.31□□□□□ -1.24
SCN9A-202ENST00000409435 RPL10LQ96L21 214 aaKnown RBP7.31□□□□□ -1.24
SCN9A-202ENST00000409435 AP1S3Q96PC3 154 aa7.31□□□□□ -1.24
SCN9A-202ENST00000409435 MLXIPLQ9NP71 852 aa7.31□□□□□ -1.24
SCN9A-202ENST00000409435 SPHK2Q9NRA0 654 aa7.31□□□□□ -1.24
SCN9A-202ENST00000409435 PSME2Q9UL46 239 aa7.31□□□□□ -1.24
SCN9A-202ENST00000409435 MTMR11A4FU01 709 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 C2orf71A6NGG8 1288 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 FAM227AF5H4B4 570 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 LRCH4O75427 683 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 UGT1A1P22309 533 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 ARF3P61204 181 aaPredicted RBP7.3□□□□□ -1.24
SCN9A-202ENST00000409435 ARF1P84077 181 aaKnown RBP7.3□□□□□ -1.24
SCN9A-202ENST00000409435 C6orf10Q5SRN2 563 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 SLC25A24Q6NUK1 477 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 ZNF280BQ86YH2 543 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 KCTD4Q8WVF5 259 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 ZBED3Q96IU2 234 aaPredicted RBP7.3□□□□□ -1.24
SCN9A-202ENST00000409435 PABPC3Q9H361 631 aaKnown RBP7.3□□□□□ -1.24
SCN9A-202ENST00000409435 RSL24D1Q9UHA3 163 aaKnown RBP7.3□□□□□ -1.24
SCN9A-202ENST00000409435 PADI4Q9UM07 663 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 SNX6Q9UNH7 406 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 GNEQ9Y223 722 aaKnown RBP7.3□□□□□ -1.24
SCN9A-202ENST00000409435 WDR37Q9Y2I8 494 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 LRCH1Q9Y2L9 728 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 OR10H1Q9Y4A9 318 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 CAPN8A6NHC0 703 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 B2RBV5 119 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 DFNA5O60443 496 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 ADAMTS4O75173 837 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 ATG7O95352 703 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 TYK2P29597 1187 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 CMPK1P30085 196 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 CD6P30203 668 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 MRPS21P82921 87 aaKnown RBP7.3□□□□□ -1.24
SCN9A-202ENST00000409435 ITGADQ13349 1161 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 GNA13Q14344 377 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 ARSIQ5FYB1 569 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 SHQ1Q6PI26 577 aaKnown RBP7.3□□□□□ -1.24
SCN9A-202ENST00000409435 KIAA0408Q6ZU52 694 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 AKAP14Q86UN6 197 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 TMEFF1Q8IYR6 380 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 ADSSL1Q8N142 457 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 GRPEL2Q8TAA5 225 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 UBE2E3Q969T4 207 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 CENPTQ96BT3 561 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 TMEM74Q96NL1 305 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 QRFPRQ96P65 431 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 HPS4Q9NQG7 708 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 COMMD9Q9P000 198 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 CTNNAL1Q9UBT7 734 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 RNF112Q9ULX5 631 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 SLC6A14Q9UN76 642 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 R4GN57 208 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 A0A1B0GTW7 788 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 CLDN4O14493 209 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 MSI1O43347 362 aaKnown RBP7.3□□□□□ -1.24
SCN9A-202ENST00000409435 CST8O60676 142 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 ENO3P13929 434 aaPredicted RBP7.3□□□□□ -1.24
SCN9A-202ENST00000409435 TGFBR2P37173 567 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 RPS21P63220 83 aaKnown RBP7.3□□□□□ -1.24
SCN9A-202ENST00000409435 RHAGQ02094 409 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 SIGLEC14Q08ET2 396 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 ATG14Q6ZNE5 492 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 KIF2BQ8N4N8 673 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 DTWD2Q8NBA8 298 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 KLHDC9Q8NEP7 349 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 CMKLR1Q99788 373 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 C6orf62Q9GZU0 229 aaPredicted RBP7.3□□□□□ -1.24
SCN9A-202ENST00000409435 AVENQ9NQS1 362 aaPredicted RBP7.3□□□□□ -1.24
SCN9A-202ENST00000409435 VPS45Q9NRW7 570 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 IMPAD1Q9NX62 359 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 COPS7AQ9UBW8 275 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 ENTPD4Q9Y227 616 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 COMMD3-BMI1R4GMX3 469 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 SOWAHDA6NJG2 315 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 TRIM49D1C9J1S8 452 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 KRT36O76013 467 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 CDK14O94921 469 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 TNFAIP8O95379 198 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 COL9A1P20849 921 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 MAPKAPK2P49137 400 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 ALDH9A1P49189 494 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 SEPHS1P49903 392 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 NTHL1P78549 312 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 DUSP6Q16828 381 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 C1orf186Q6ZWK4 172 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 PACS2Q86VP3 889 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 VSTM4Q8IW00 320 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 PRSS58Q8IYP2 241 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 SVOPQ8N4V2 548 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 LRRC17Q8N6Y2 441 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 PPM1NQ8N819 430 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 GPT2Q8TD30 523 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 TBCBQ99426 244 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 C16orf70Q9BSU1 422 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 OSBPL6Q9BZF3 934 aa7.3□□□□□ -1.24
SCN9A-202ENST00000409435 BRINP2Q9C0B6 783 aa7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms