RNA–Protein interactions for RNA: ENST00000409403.6

CLK1-202, Transcript of CDC like kinase 1, humanhuman

TSL 5

Gene CLK1, Length 1,664 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-202ENST00000409403 CD48P09326 243 aa5.53□□□□□ -1.52
CLK1-202ENST00000409403 ACAT1P24752 427 aaKnown RBP5.53□□□□□ -1.52
CLK1-202ENST00000409403 GNA11P29992 359 aa5.53□□□□□ -1.52
CLK1-202ENST00000409403 SLC5A2P31639 672 aa5.53□□□□□ -1.52
CLK1-202ENST00000409403 STAT1P42224 750 aa5.53□□□□□ -1.52
CLK1-202ENST00000409403 ALDH1A3P47895 512 aa5.53□□□□□ -1.52
CLK1-202ENST00000409403 C21orf59P57076 290 aa5.53□□□□□ -1.52
CLK1-202ENST00000409403 PPATQ06203 517 aa5.53□□□□□ -1.52
CLK1-202ENST00000409403 NSUN2Q08J23 767 aaKnown RBP eCLIP5.53□□□□□ -1.52
CLK1-202ENST00000409403 TRPC3Q13507 836 aa5.53□□□□□ -1.52
CLK1-202ENST00000409403 RIN1Q13671 783 aa5.53□□□□□ -1.52
CLK1-202ENST00000409403 PTK6Q13882 451 aa5.53□□□□□ -1.52
CLK1-202ENST00000409403 POLD3Q15054 466 aaPredicted RBP5.53□□□□□ -1.52
CLK1-202ENST00000409403 TGFBIQ15582 683 aa5.53□□□□□ -1.52
CLK1-202ENST00000409403 IL17AQ16552 155 aa5.53□□□□□ -1.52
CLK1-202ENST00000409403 RGS21Q2M5E4 152 aa5.53□□□□□ -1.52
CLK1-202ENST00000409403 TRIM71Q2Q1W2 868 aaKnown RBP5.53□□□□□ -1.52
CLK1-202ENST00000409403 MYLK3Q32MK0 819 aa5.53□□□□□ -1.52
CLK1-202ENST00000409403 FLYWCH1Q4VC44 716 aa5.53□□□□□ -1.52
CLK1-202ENST00000409403 EARS2Q5JPH6 523 aaKnown RBP5.53□□□□□ -1.52
CLK1-202ENST00000409403 OGFRL1Q5TC84 451 aaPredicted RBP5.53□□□□□ -1.52
CLK1-202ENST00000409403 AFMIDQ63HM1 303 aa5.53□□□□□ -1.52
CLK1-202ENST00000409403 RHBDF2Q6PJF5 856 aa5.53□□□□□ -1.52
CLK1-202ENST00000409403 DCDC5Q6ZRR9 648 aa5.53□□□□□ -1.52
CLK1-202ENST00000409403 RAPH1Q70E73 1250 aa5.53□□□□□ -1.52
CLK1-202ENST00000409403 ZNF571Q7Z3V5 609 aaPredicted RBP5.53□□□□□ -1.52
CLK1-202ENST00000409403 IRF2BP2Q7Z5L9 587 aa5.53□□□□□ -1.52
CLK1-202ENST00000409403 CHSY1Q86X52 802 aa5.53□□□□□ -1.52
CLK1-202ENST00000409403 APOBEC3FQ8IUX4 373 aaKnown RBP5.53□□□□□ -1.52
CLK1-202ENST00000409403 BLIDQ8IZY5 108 aa5.53□□□□□ -1.52
CLK1-202ENST00000409403 LGI4Q8N135 537 aa5.53□□□□□ -1.52
CLK1-202ENST00000409403 C4orf32Q8N8J7 132 aa5.53□□□□□ -1.52
CLK1-202ENST00000409403 PRELID2Q8N945 189 aa5.53□□□□□ -1.52
CLK1-202ENST00000409403 SHCBP1Q8NEM2 672 aa5.53□□□□□ -1.52
CLK1-202ENST00000409403 ZFP28Q8NHY6 868 aa5.53□□□□□ -1.52
CLK1-202ENST00000409403 MAML1Q92585 1016 aa5.53□□□□□ -1.52
CLK1-202ENST00000409403 C18orf8Q96DM3 657 aa5.53□□□□□ -1.52
CLK1-202ENST00000409403 NT5C1BQ96P26 610 aa5.53□□□□□ -1.52
CLK1-202ENST00000409403 PPP1R10Q96QC0 940 aaKnown RBP5.53□□□□□ -1.52
CLK1-202ENST00000409403 PRPF18Q99633 342 aaKnown RBP5.53□□□□□ -1.52
CLK1-202ENST00000409403 HEPHQ9BQS7 1158 aa5.53□□□□□ -1.52
CLK1-202ENST00000409403 ZSWIM1Q9BR11 485 aa5.53□□□□□ -1.52
CLK1-202ENST00000409403 GPATCH1Q9BRR8 931 aaKnown RBP5.53□□□□□ -1.52
CLK1-202ENST00000409403 TSSK1BQ9BXA7 367 aa5.53□□□□□ -1.52
CLK1-202ENST00000409403 FAM96AQ9H5X1 160 aa5.53□□□□□ -1.52
CLK1-202ENST00000409403 LRRC19Q9H756 370 aa5.53□□□□□ -1.52
CLK1-202ENST00000409403 ZMAT3Q9HA38 289 aaKnown RBP5.53□□□□□ -1.52
CLK1-202ENST00000409403 NINJ2Q9NZG7 142 aa5.53□□□□□ -1.52
CLK1-202ENST00000409403 TMOD2Q9NZR1 351 aa5.53□□□□□ -1.52
CLK1-202ENST00000409403 PSMC3IPQ9P2W1 217 aaPredicted RBP5.53□□□□□ -1.52
CLK1-202ENST00000409403 ASIC3Q9UHC3 531 aa5.53□□□□□ -1.52
CLK1-202ENST00000409403 RUVBL1Q9Y265 456 aaKnown RBP5.53□□□□□ -1.52
CLK1-202ENST00000409403 AP4S1Q9Y587 144 aa5.53□□□□□ -1.52
CLK1-202ENST00000409403 IKBKGQ9Y6K9 419 aa5.53□□□□□ -1.52
CLK1-202ENST00000409403 A0A0G2JND7 137 aa5.52□□□□□ -1.53
CLK1-202ENST00000409403 A0A1W2PRX2 142 aa5.52□□□□□ -1.53
CLK1-202ENST00000409403 UBE2QL1A1L167 161 aa5.52□□□□□ -1.53
CLK1-202ENST00000409403 GTPBP10A4D1E9 387 aaKnown RBP5.52□□□□□ -1.53
CLK1-202ENST00000409403 NT5C1B-RDH14C9J2C7 533 aa5.52□□□□□ -1.53
CLK1-202ENST00000409403 H0YJX3 145 aa5.52□□□□□ -1.53
CLK1-202ENST00000409403 ATP2A1O14983 1001 aa5.52□□□□□ -1.53
CLK1-202ENST00000409403 FRS3O43559 492 aa5.52□□□□□ -1.53
CLK1-202ENST00000409403 ITM2AO43736 263 aa5.52□□□□□ -1.53
CLK1-202ENST00000409403 STAM2O75886 525 aa5.52□□□□□ -1.53
CLK1-202ENST00000409403 KRT75O95678 551 aa5.52□□□□□ -1.53
CLK1-202ENST00000409403 PCCAP05165 728 aaPredicted RBP5.52□□□□□ -1.53
CLK1-202ENST00000409403 MYL3P08590 195 aa5.52□□□□□ -1.53
CLK1-202ENST00000409403 OR52Z1P0C646 297 aa5.52□□□□□ -1.53
CLK1-202ENST00000409403 FCER1AP12319 257 aa5.52□□□□□ -1.53
CLK1-202ENST00000409403 UCHL3P15374 230 aa5.52□□□□□ -1.53
CLK1-202ENST00000409403 PRDX6P30041 224 aa5.52□□□□□ -1.53
CLK1-202ENST00000409403 GSSP48637 474 aa5.52□□□□□ -1.53
CLK1-202ENST00000409403 CCR3P51677 355 aa5.52□□□□□ -1.53
CLK1-202ENST00000409403 VCPP55072 806 aaKnown RBP5.52□□□□□ -1.53
CLK1-202ENST00000409403 AQP4P55087 323 aa5.52□□□□□ -1.53
CLK1-202ENST00000409403 ATP6V0D1P61421 351 aa5.52□□□□□ -1.53
CLK1-202ENST00000409403 DMPKQ09013 629 aa5.52□□□□□ -1.53
CLK1-202ENST00000409403 MRPL49Q13405 166 aaKnown RBP5.52□□□□□ -1.53
CLK1-202ENST00000409403 NR1D2Q14995 579 aa5.52□□□□□ -1.53
CLK1-202ENST00000409403 DLGAP5Q15398 846 aa5.52□□□□□ -1.53
CLK1-202ENST00000409403 TRIP10Q15642 601 aa5.52□□□□□ -1.53
CLK1-202ENST00000409403 ZNF124Q15973 351 aa5.52□□□□□ -1.53
CLK1-202ENST00000409403 PFKFB3Q16875 520 aaPredicted RBP5.52□□□□□ -1.53
CLK1-202ENST00000409403 EXOC3L4Q17RC7 722 aa5.52□□□□□ -1.53
CLK1-202ENST00000409403 EDRF1Q3B7T1 1238 aa5.52□□□□□ -1.53
CLK1-202ENST00000409403 GRAMD1BQ3KR37 738 aa5.52□□□□□ -1.53
CLK1-202ENST00000409403 PARP10Q53GL7 1025 aa5.52□□□□□ -1.53
CLK1-202ENST00000409403 MFSD14BQ5SR56 506 aa5.52□□□□□ -1.53
CLK1-202ENST00000409403 METTL21CQ5VZV1 264 aa5.52□□□□□ -1.53
CLK1-202ENST00000409403 ZFP1Q6P2D0 407 aa5.52□□□□□ -1.53
CLK1-202ENST00000409403 TTC23LQ6PF05 361 aa5.52□□□□□ -1.53
CLK1-202ENST00000409403 HAUS6Q7Z4H7 955 aa5.52□□□□□ -1.53
CLK1-202ENST00000409403 PLXDC1Q8IUK5 500 aa5.52□□□□□ -1.53
CLK1-202ENST00000409403 ZNF34Q8IZ26 560 aa5.52□□□□□ -1.53
CLK1-202ENST00000409403 KRT78Q8N1N4 520 aa5.52□□□□□ -1.53
CLK1-202ENST00000409403 TRIML2Q8N7C3 387 aa5.52□□□□□ -1.53
CLK1-202ENST00000409403 PDPRQ8NCN5 879 aa5.52□□□□□ -1.53
CLK1-202ENST00000409403 ZNF420Q8TAQ5 688 aaPredicted RBP5.52□□□□□ -1.53
CLK1-202ENST00000409403 HERVK_113Q902F9 699 aa5.52□□□□□ -1.53
CLK1-202ENST00000409403 NEIL1Q96FI4 390 aaPredicted RBP5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms