RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 RDH12Q96NR8 316 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 WDR18Q9BV38 432 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 ATF5Q9Y2D1 282 aaPredicted RBP6.1□□□□□ -1.43
SCN1A-203ENST00000409050 PCDHGB2Q9Y5G2 931 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 ITSN1Q15811 1721 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 ZNF879B4DU55 563 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 SOX30O94993 753 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 IFNA6P05013 189 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 FMO4P31512 558 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 CCNFP41002 786 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 KLF10Q13118 480 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 PWP1Q13610 501 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 TAF5Q15542 800 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 ZNF697Q5TEC3 545 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 FBXL19Q6PCT2 694 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 ADGRG6Q86SQ4 1221 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 COMMD2Q86X83 199 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 FAM13CQ8NE31 585 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 TTLQ8NG68 377 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 GIPC3Q8TF64 312 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 DNAJB3Q8WWF6 145 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 SLC38A4Q969I6 547 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 ERMAPQ96PL5 475 aaPredicted RBP6.1□□□□□ -1.43
SCN1A-203ENST00000409050 ASB8Q9H765 288 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 FANCFQ9NPI8 374 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 PRDM5Q9NQX1 630 aaPredicted RBP6.1□□□□□ -1.43
SCN1A-203ENST00000409050 STARD7Q9NQZ5 370 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 SNX15Q9NRS6 342 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 DNAJC11Q9NVH1 559 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 AASSQ9UDR5 926 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 SPATA31D1Q6ZQQ2 1576 aa6.1□□□□□ -1.43
SCN1A-203ENST00000409050 FAM240BA0A1B0GVZ2 78 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 GSC2O15499 205 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 UROSP10746 265 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 EEFSECP57772 596 aaKnown RBP6.09□□□□□ -1.43
SCN1A-203ENST00000409050 SPIBQ01892 262 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 BOP1Q14137 746 aaKnown RBP6.09□□□□□ -1.43
SCN1A-203ENST00000409050 RFTN1Q14699 578 aaPredicted RBP6.09□□□□□ -1.43
SCN1A-203ENST00000409050 SLC25A52Q3SY17 297 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 RALGPS1Q5JS13 557 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 GCNT6Q5T4J0 391 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 CYP2R1Q6VVX0 501 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 ARHGAP36Q6ZRI8 547 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 SLC26A9Q7LBE3 791 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 RASAL3Q86YV0 1011 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 C11orf65Q8NCR3 313 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 OR10H5Q8NGA6 315 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 SLC2A14Q8TDB8 520 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 CAPSLQ8WWF8 208 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 ELMO1Q92556 727 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 AZIN2Q96A70 460 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 SENP8Q96LD8 212 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 PANX1Q96RD7 426 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 NDNQ99608 321 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 DGCR6LQ9BY27 220 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 ADAM33Q9BZ11 813 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 ULBP1Q9BZM6 244 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 ALG9Q9H6U8 611 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 CHST7Q9NS84 486 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 TBCCD1Q9NVR7 557 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 KIAA1522Q9P206 1035 aaPredicted RBP6.09□□□□□ -1.43
SCN1A-203ENST00000409050 R3HDM2Q9Y2K5 976 aaKnown RBP6.09□□□□□ -1.43
SCN1A-203ENST00000409050 E5RJQ4 531 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 SMNDC1O75940 238 aaKnown RBP eCLIP6.09□□□□□ -1.43
SCN1A-203ENST00000409050 PCDH8O95206 1070 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 FABP3P05413 133 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 FAM153BP0C7A2 387 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 C7P10643 843 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 GNAZP19086 355 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 GLRA2P23416 452 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 HOXA10P31260 410 aaPredicted RBP6.09□□□□□ -1.43
SCN1A-203ENST00000409050 SLC6A4P31645 630 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 TXNL4AP83876 142 aaKnown RBP6.09□□□□□ -1.43
SCN1A-203ENST00000409050 SLC9A5Q14940 896 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 PFKFB4Q16877 469 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 FAM153CQ494X1 144 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 CPTPQ5TA50 214 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 ADNP2Q6IQ32 1131 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 ANO7Q6IWH7 933 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 BNIPLQ7Z465 357 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 VSIG10LQ86VR7 867 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 DNAAF5Q86Y56 855 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 HIST2H2ABQ8IUE6 130 aaPredicted RBP6.09□□□□□ -1.43
SCN1A-203ENST00000409050 TSEN2Q8NCE0 465 aaKnown RBP6.09□□□□□ -1.43
SCN1A-203ENST00000409050 FBXO30Q8TB52 745 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 KAT2BQ92831 832 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 NACC2Q96BF6 587 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 YME1L1Q96TA2 773 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 MGME1Q9BQP7 344 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 SNRNP25Q9BV90 132 aaKnown RBP6.09□□□□□ -1.43
SCN1A-203ENST00000409050 CIPCQ9C0C6 399 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 SYNDIG1Q9H7V2 258 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 KAT8Q9H7Z6 458 aaKnown RBP6.09□□□□□ -1.43
SCN1A-203ENST00000409050 INTS10Q9NVR2 710 aaKnown RBP6.09□□□□□ -1.43
SCN1A-203ENST00000409050 MED11Q9P086 117 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 CFL2Q9Y281 166 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 IQGAP1P46940 1657 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 CFAP65Q6ZU64 1925 aaKnown RBP6.09□□□□□ -1.43
SCN1A-203ENST00000409050 KMOO15229 486 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 OR10H3O60404 316 aa6.09□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms