RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 PCDHAC1Q9H158 963 aa18.53■□□□□ 0.56
USP48-204ENST00000400301 PCDHGC4Q9Y5F7 938 aa18.53■□□□□ 0.56
USP48-204ENST00000400301 TMEM247A6NEH6 219 aa18.53■□□□□ 0.56
USP48-204ENST00000400301 GNA12Q03113 381 aa18.53■□□□□ 0.56
USP48-204ENST00000400301 BOP1Q14137 746 aaKnown RBP18.53■□□□□ 0.56
USP48-204ENST00000400301 PITRM1Q5JRX3 1037 aa18.53■□□□□ 0.56
USP48-204ENST00000400301 PAAF1Q9BRP4 392 aa18.53■□□□□ 0.56
USP48-204ENST00000400301 C2orf49Q9BVC5 232 aaPredicted RBP18.53■□□□□ 0.56
USP48-204ENST00000400301 CDK5RAP2Q96SN8 1893 aa18.52■□□□□ 0.56
USP48-204ENST00000400301 ADAMTSL1Q8N6G6 1762 aa18.52■□□□□ 0.56
USP48-204ENST00000400301 IL1BP01584 269 aa18.52■□□□□ 0.56
USP48-204ENST00000400301 SMAD3P84022 425 aaKnown RBP18.52■□□□□ 0.56
USP48-204ENST00000400301 MAD2L1Q13257 205 aaPredicted RBP18.52■□□□□ 0.56
USP48-204ENST00000400301 SUSD3Q96L08 255 aa18.52■□□□□ 0.56
USP48-204ENST00000400301 HOPXQ9BPY8 73 aaPredicted RBP18.52■□□□□ 0.56
USP48-204ENST00000400301 MRPS26Q9BYN8 205 aaKnown RBP18.52■□□□□ 0.56
USP48-204ENST00000400301 SMOC2Q9H3U7 446 aa18.52■□□□□ 0.56
USP48-204ENST00000400301 MOSPD1Q9UJG1 213 aa18.52■□□□□ 0.56
USP48-204ENST00000400301 TLR6Q9Y2C9 796 aa18.52■□□□□ 0.56
USP48-204ENST00000400301 RGS14O43566 566 aa18.52■□□□□ 0.56
USP48-204ENST00000400301 TBL1XO60907 577 aa18.52■□□□□ 0.56
USP48-204ENST00000400301 ST8SIA6P61647 398 aa18.52■□□□□ 0.56
USP48-204ENST00000400301 KRT33BQ14525 404 aa18.52■□□□□ 0.56
USP48-204ENST00000400301 FBXO30Q8TB52 745 aa18.52■□□□□ 0.56
USP48-204ENST00000400301 B3GALT6Q96L58 329 aa18.52■□□□□ 0.56
USP48-204ENST00000400301 CXCL16Q9H2A7 254 aa18.52■□□□□ 0.56
USP48-204ENST00000400301 PIDD1Q9HB75 910 aa18.52■□□□□ 0.56
USP48-204ENST00000400301 HMX1Q9NP08 348 aaPredicted RBP18.52■□□□□ 0.56
USP48-204ENST00000400301 CAPN15O75808 1086 aa18.52■□□□□ 0.55
USP48-204ENST00000400301 DGKAP23743 735 aa18.52■□□□□ 0.55
USP48-204ENST00000400301 ACBD5Q5T8D3 534 aaPredicted RBP18.52■□□□□ 0.55
USP48-204ENST00000400301 FBXL22Q6P050 247 aa18.52■□□□□ 0.55
USP48-204ENST00000400301 TXNDC11Q6PKC3 985 aa18.52■□□□□ 0.55
USP48-204ENST00000400301 TPGS1Q6ZTW0 290 aa18.52■□□□□ 0.55
USP48-204ENST00000400301 OR13C4Q8NGS5 318 aa18.52■□□□□ 0.55
USP48-204ENST00000400301 OR6K2Q8NGY2 324 aa18.52■□□□□ 0.55
USP48-204ENST00000400301 TTPALQ9BTX7 342 aa18.52■□□□□ 0.55
USP48-204ENST00000400301 ZFP14Q9HCL3 533 aa18.52■□□□□ 0.55
USP48-204ENST00000400301 PRKAG2Q9UGJ0 569 aa18.52■□□□□ 0.55
USP48-204ENST00000400301 CCDC162PA2VCL2 907 aa18.51■□□□□ 0.55
USP48-204ENST00000400301 BBIP1A8MTZ0 92 aa18.51■□□□□ 0.55
USP48-204ENST00000400301 SLC22A2O15244 555 aa18.51■□□□□ 0.55
USP48-204ENST00000400301 CLDN11O75508 207 aa18.51■□□□□ 0.55
USP48-204ENST00000400301 SLC22A3O75751 556 aa18.51■□□□□ 0.55
USP48-204ENST00000400301 CLCQ05315 142 aa18.51■□□□□ 0.55
USP48-204ENST00000400301 ADGRE1Q14246 886 aa18.51■□□□□ 0.55
USP48-204ENST00000400301 PKDCCQ504Y2 493 aa18.51■□□□□ 0.55
USP48-204ENST00000400301 CCDC81Q6ZN84 652 aa18.51■□□□□ 0.55
USP48-204ENST00000400301 RPS27LQ71UM5 84 aaKnown RBP18.51■□□□□ 0.55
USP48-204ENST00000400301 ADAMTSL2Q86TH1 951 aa18.51■□□□□ 0.55
USP48-204ENST00000400301 SPPL2CQ8IUH8 684 aa18.51■□□□□ 0.55
USP48-204ENST00000400301 FAM9CQ8IZT9 166 aa18.51■□□□□ 0.55
USP48-204ENST00000400301 ARL15Q9NXU5 204 aa18.51■□□□□ 0.55
USP48-204ENST00000400301 RAI2Q9Y5P3 530 aa18.51■□□□□ 0.55
USP48-204ENST00000400301 ARL5AQ9Y689 179 aa18.51■□□□□ 0.55
USP48-204ENST00000400301 UBR3Q6ZT12 1888 aa18.51■□□□□ 0.55
USP48-204ENST00000400301 MOXD2PA6NHM9 499 aa18.51■□□□□ 0.55
USP48-204ENST00000400301 MAPK1P28482 360 aa18.51■□□□□ 0.55
USP48-204ENST00000400301 TSNQ15631 228 aaKnown RBP18.51■□□□□ 0.55
USP48-204ENST00000400301 AGMOQ6ZNB7 445 aa18.51■□□□□ 0.55
USP48-204ENST00000400301 ZDHHC13Q8IUH4 622 aa18.51■□□□□ 0.55
USP48-204ENST00000400301 FAM47BQ8NA70 645 aa18.51■□□□□ 0.55
USP48-204ENST00000400301 BRSK1Q8TDC3 778 aa18.51■□□□□ 0.55
USP48-204ENST00000400301 MTFMTQ96DP5 389 aaKnown RBP18.51■□□□□ 0.55
USP48-204ENST00000400301 FUBP3Q96I24 572 aaKnown RBP eCLIP18.51■□□□□ 0.55
USP48-204ENST00000400301 TMEM209Q96SK2 561 aa18.51■□□□□ 0.55
USP48-204ENST00000400301 MIOSQ9NXC5 875 aa18.51■□□□□ 0.55
USP48-204ENST00000400301 SCN3BQ9NY72 215 aa18.51■□□□□ 0.55
USP48-204ENST00000400301 Q9Y3F1 56 aa18.51■□□□□ 0.55
USP48-204ENST00000400301 PIP5K1BO14986 540 aa18.51■□□□□ 0.55
USP48-204ENST00000400301 HNRNPRO43390 633 aaKnown RBP18.51■□□□□ 0.55
USP48-204ENST00000400301 SIX3O95343 332 aaPredicted RBP18.51■□□□□ 0.55
USP48-204ENST00000400301 CPSF4O95639 269 aaKnown RBP18.51■□□□□ 0.55
USP48-204ENST00000400301 IGSF6O95976 241 aa18.51■□□□□ 0.55
USP48-204ENST00000400301 GNAZP19086 355 aa18.51■□□□□ 0.55
USP48-204ENST00000400301 GJA5P36382 358 aa18.51■□□□□ 0.55
USP48-204ENST00000400301 ZNF33AQ06730 810 aa18.51■□□□□ 0.55
USP48-204ENST00000400301 CRY1Q16526 586 aa18.51■□□□□ 0.55
USP48-204ENST00000400301 GANCQ8TET4 914 aa18.51■□□□□ 0.55
USP48-204ENST00000400301 LRTOMTQ8WZ04 291 aa18.51■□□□□ 0.55
USP48-204ENST00000400301 ESAMQ96AP7 390 aa18.51■□□□□ 0.55
USP48-204ENST00000400301 DGCR14Q96DF8 476 aaKnown RBP18.51■□□□□ 0.55
USP48-204ENST00000400301 C1orf232A0A0U1RR37 186 aa18.5■□□□□ 0.55
USP48-204ENST00000400301 RAD23AP54725 363 aa18.5■□□□□ 0.55
USP48-204ENST00000400301 LCP2Q13094 533 aa18.5■□□□□ 0.55
USP48-204ENST00000400301 ZIK1Q3SY52 487 aaPredicted RBP18.5■□□□□ 0.55
USP48-204ENST00000400301 LINGO4Q6UY18 593 aa18.5■□□□□ 0.55
USP48-204ENST00000400301 C14orf80Q86SX3 495 aa18.5■□□□□ 0.55
USP48-204ENST00000400301 ARNTL2Q8WYA1 636 aa18.5■□□□□ 0.55
USP48-204ENST00000400301 RHBDL2Q9NX52 303 aa18.5■□□□□ 0.55
USP48-204ENST00000400301 RAB26Q9ULW5 256 aa18.5■□□□□ 0.55
USP48-204ENST00000400301 A0A088AWK7 358 aa18.5■□□□□ 0.55
USP48-204ENST00000400301 M0R3G1 203 aa18.5■□□□□ 0.55
USP48-204ENST00000400301 MAP3K13O43283 966 aa18.5■□□□□ 0.55
USP48-204ENST00000400301 ACSL4O60488 711 aa18.5■□□□□ 0.55
USP48-204ENST00000400301 MZF1P28698 734 aaPredicted RBP18.5■□□□□ 0.55
USP48-204ENST00000400301 RPL38P63173 70 aaKnown RBP18.5■□□□□ 0.55
USP48-204ENST00000400301 SCAPQ12770 1279 aa18.5■□□□□ 0.55
USP48-204ENST00000400301 ZBTB6Q15916 424 aa18.5■□□□□ 0.55
USP48-204ENST00000400301 ZNF276Q8N554 614 aa18.5■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms