RNA–Protein interactions for RNA: ENST00000395794.2

CXCL12-205, Transcript of C-X-C motif chemokine ligand 12, humanhuman

TSL 1 (best) BASIC

Gene CXCL12, Length 1,052 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12-205ENST00000395794 PCDH9Q9HC56 1237 aa13.73□□□□□ -0.21
CXCL12-205ENST00000395794 MRPL40Q9NQ50 206 aaKnown RBP13.73□□□□□ -0.21
CXCL12-205ENST00000395794 PCDHB1Q9Y5F3 818 aa13.73□□□□□ -0.21
CXCL12-205ENST00000395794 A0A087WV48 116 aa13.72□□□□□ -0.21
CXCL12-205ENST00000395794 PRSS38A1L453 326 aa13.72□□□□□ -0.21
CXCL12-205ENST00000395794 CAPN8A6NHC0 703 aa13.72□□□□□ -0.21
CXCL12-205ENST00000395794 IPO7O95373 1038 aaKnown RBP13.72□□□□□ -0.21
CXCL12-205ENST00000395794 MPOP05164 745 aa13.72□□□□□ -0.21
CXCL12-205ENST00000395794 COMTP21964 271 aa13.72□□□□□ -0.21
CXCL12-205ENST00000395794 TEAD1P28347 426 aa13.72□□□□□ -0.21
CXCL12-205ENST00000395794 CYLC1P35663 651 aaPredicted RBP13.72□□□□□ -0.21
CXCL12-205ENST00000395794 CD86P42081 329 aa13.72□□□□□ -0.21
CXCL12-205ENST00000395794 DYNLT1P63172 113 aa13.72□□□□□ -0.21
CXCL12-205ENST00000395794 GABREP78334 506 aa13.72□□□□□ -0.21
CXCL12-205ENST00000395794 IFI35P80217 286 aaPredicted RBP13.72□□□□□ -0.21
CXCL12-205ENST00000395794 CDK3Q00526 305 aa13.72□□□□□ -0.21
CXCL12-205ENST00000395794 DPTQ07507 201 aa13.72□□□□□ -0.21
CXCL12-205ENST00000395794 ILF3Q12906 894 aaKnown RBP eCLIP13.72□□□□□ -0.21
CXCL12-205ENST00000395794 TFDP2Q14188 446 aa13.72□□□□□ -0.21
CXCL12-205ENST00000395794 COL28A1Q2UY09 1125 aa13.72□□□□□ -0.21
CXCL12-205ENST00000395794 PERM1Q5SV97 790 aa13.72□□□□□ -0.21
CXCL12-205ENST00000395794 SLC9A4Q6AI14 798 aa13.72□□□□□ -0.21
CXCL12-205ENST00000395794 CCDC170Q8IYT3 715 aa13.72□□□□□ -0.21
CXCL12-205ENST00000395794 PLD5Q8N7P1 536 aa13.72□□□□□ -0.21
CXCL12-205ENST00000395794 LPCAT1Q8NF37 534 aa13.72□□□□□ -0.21
CXCL12-205ENST00000395794 ARRDC2Q8TBH0 407 aa13.72□□□□□ -0.21
CXCL12-205ENST00000395794 KIAA1524Q8TCG1 905 aa13.72□□□□□ -0.21
CXCL12-205ENST00000395794 CCHCR1Q8TD31 782 aa13.72□□□□□ -0.21
CXCL12-205ENST00000395794 GSDMCQ9BYG8 508 aa13.72□□□□□ -0.21
CXCL12-205ENST00000395794 TMEM168Q9H0V1 697 aa13.72□□□□□ -0.21
CXCL12-205ENST00000395794 POLR1BQ9H9Y6 1135 aa13.72□□□□□ -0.21
CXCL12-205ENST00000395794 SEPT10Q9P0V9 454 aa13.72□□□□□ -0.21
CXCL12-205ENST00000395794 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.72□□□□□ -0.21
CXCL12-205ENST00000395794 TDRD6O60522 2096 aaKnown RBP13.71□□□□□ -0.21
CXCL12-205ENST00000395794 C3orf70A6NLC5 250 aaPredicted RBP13.71□□□□□ -0.21
CXCL12-205ENST00000395794 B4DGG1 531 aa13.71□□□□□ -0.21
CXCL12-205ENST00000395794 TMX2-CTNND1H3BSU7 103 aa13.71□□□□□ -0.21
CXCL12-205ENST00000395794 ZW10O43264 779 aa13.71□□□□□ -0.21
CXCL12-205ENST00000395794 PSTPIP1O43586 416 aa13.71□□□□□ -0.21
CXCL12-205ENST00000395794 RBMS1P29558 406 aaKnown RBP13.71□□□□□ -0.21
CXCL12-205ENST00000395794 ABCG1P45844 678 aa13.71□□□□□ -0.21
CXCL12-205ENST00000395794 GNPDA1P46926 289 aa13.71□□□□□ -0.21
CXCL12-205ENST00000395794 LSSP48449 732 aa13.71□□□□□ -0.21
CXCL12-205ENST00000395794 NR2C2P49116 596 aa13.71□□□□□ -0.21
CXCL12-205ENST00000395794 PTSQ03393 145 aa13.71□□□□□ -0.21
CXCL12-205ENST00000395794 NIPAL4Q0D2K0 466 aa13.71□□□□□ -0.21
CXCL12-205ENST00000395794 BIRC2Q13490 618 aa13.71□□□□□ -0.21
CXCL12-205ENST00000395794 PTPRRQ15256 657 aa13.71□□□□□ -0.21
CXCL12-205ENST00000395794 TBC1D25Q3MII6 688 aa13.71□□□□□ -0.21
CXCL12-205ENST00000395794 CCDC70Q6NSX1 233 aa13.71□□□□□ -0.21
CXCL12-205ENST00000395794 ADAMTSL4Q6UY14 1074 aa13.71□□□□□ -0.21
CXCL12-205ENST00000395794 NYAP1Q6ZVC0 841 aa13.71□□□□□ -0.21
CXCL12-205ENST00000395794 ZNF765Q7L2R6 523 aa13.71□□□□□ -0.21
CXCL12-205ENST00000395794 TECPR1Q7Z6L1 1165 aa13.71□□□□□ -0.21
CXCL12-205ENST00000395794 NLRP8Q86W28 1048 aa13.71□□□□□ -0.21
CXCL12-205ENST00000395794 RAVER1Q8IY67 606 aaKnown RBP13.71□□□□□ -0.21
CXCL12-205ENST00000395794 NRSN1Q8IZ57 195 aa13.71□□□□□ -0.21
CXCL12-205ENST00000395794 PELI3Q8N2H9 469 aa13.71□□□□□ -0.21
CXCL12-205ENST00000395794 TC2NQ8N9U0 490 aa13.71□□□□□ -0.21
CXCL12-205ENST00000395794 CCDC74AQ96AQ1 378 aa13.71□□□□□ -0.21
CXCL12-205ENST00000395794 ZNF578Q96N58 590 aaPredicted RBP13.71□□□□□ -0.21
CXCL12-205ENST00000395794 AGAP3Q96P47 875 aa13.71□□□□□ -0.21
CXCL12-205ENST00000395794 GFM1Q96RP9 751 aaKnown RBP13.71□□□□□ -0.21
CXCL12-205ENST00000395794 MLPHQ9BV36 600 aaPredicted RBP13.71□□□□□ -0.21
CXCL12-205ENST00000395794 ABCG8Q9H221 673 aa13.71□□□□□ -0.21
CXCL12-205ENST00000395794 TRNAU1APQ9NX07 287 aaKnown RBP13.71□□□□□ -0.21
CXCL12-205ENST00000395794 CD84Q9UIB8 345 aa13.71□□□□□ -0.21
CXCL12-205ENST00000395794 RALYQ9UKM9 306 aaKnown RBP13.71□□□□□ -0.21
CXCL12-205ENST00000395794 HYOU1Q9Y4L1 999 aa13.71□□□□□ -0.21
CXCL12-205ENST00000395794 PCDHA13Q9Y5I0 950 aa13.71□□□□□ -0.21
CXCL12-205ENST00000395794 ZFHX4Q86UP3 3567 aa13.71□□□□□ -0.21
CXCL12-205ENST00000395794 ARID1BQ8NFD5 2236 aaPredicted RBP13.7□□□□□ -0.22
CXCL12-205ENST00000395794 C1orf232A0A0U1RR37 186 aa13.7□□□□□ -0.22
CXCL12-205ENST00000395794 ANKRD66B4E2M5 251 aa13.7□□□□□ -0.22
CXCL12-205ENST00000395794 CEACAM5P06731 702 aa13.7□□□□□ -0.22
CXCL12-205ENST00000395794 GLB1P16278 677 aa13.7□□□□□ -0.22
CXCL12-205ENST00000395794 EIF2S3P41091 472 aaKnown RBP13.7□□□□□ -0.22
CXCL12-205ENST00000395794 TNNT3P45378 269 aaPredicted RBP13.7□□□□□ -0.22
CXCL12-205ENST00000395794 STC1P52823 247 aa13.7□□□□□ -0.22
CXCL12-205ENST00000395794 HADHBP55084 474 aaKnown RBP13.7□□□□□ -0.22
CXCL12-205ENST00000395794 C14orf28Q4W4Y0 310 aa13.7□□□□□ -0.22
CXCL12-205ENST00000395794 C3orf38Q5JPI3 329 aa13.7□□□□□ -0.22
CXCL12-205ENST00000395794 KCTD16Q68DU8 428 aa13.7□□□□□ -0.22
CXCL12-205ENST00000395794 DOK6Q6PKX4 331 aa13.7□□□□□ -0.22
CXCL12-205ENST00000395794 NT5DC3Q86UY8 548 aa13.7□□□□□ -0.22
CXCL12-205ENST00000395794 GPR156Q8NFN8 814 aa13.7□□□□□ -0.22
CXCL12-205ENST00000395794 EXD1Q8NHP7 514 aa13.7□□□□□ -0.22
CXCL12-205ENST00000395794 SNIP1Q8TAD8 396 aaKnown RBP13.7□□□□□ -0.22
CXCL12-205ENST00000395794 ATXN7L3BQ96GX2 97 aa13.7□□□□□ -0.22
CXCL12-205ENST00000395794 FRMD8Q9BZ67 464 aaPredicted RBP13.7□□□□□ -0.22
CXCL12-205ENST00000395794 STRADBQ9C0K7 418 aa13.7□□□□□ -0.22
CXCL12-205ENST00000395794 CDH19Q9H159 772 aa13.7□□□□□ -0.22
CXCL12-205ENST00000395794 THSD1Q9NS62 852 aa13.7□□□□□ -0.22
CXCL12-205ENST00000395794 PKD2L2Q9NZM6 624 aa13.7□□□□□ -0.22
CXCL12-205ENST00000395794 SUFUQ9UMX1 484 aa13.7□□□□□ -0.22
CXCL12-205ENST00000395794 ALG6Q9Y672 507 aa13.7□□□□□ -0.22
CXCL12-205ENST00000395794 RGSL1A5PLK6 1076 aa13.69□□□□□ -0.22
CXCL12-205ENST00000395794 TLX3O43711 291 aaPredicted RBP13.69□□□□□ -0.22
CXCL12-205ENST00000395794 ZRANB2O95218 330 aaKnown RBP eCLIP13.69□□□□□ -0.22
CXCL12-205ENST00000395794 LCA5LO95447 670 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms