RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 FKBPLQ9UIM3 349 aa10.32□□□□□ -0.76
COL6A3-205ENST00000392004 CLEC4EQ9ULY5 219 aa10.32□□□□□ -0.76
COL6A3-205ENST00000392004 SPTAN1Q13813 2472 aaKnown RBP10.32□□□□□ -0.76
COL6A3-205ENST00000392004 ILVBLA1L0T0 632 aa10.31□□□□□ -0.76
COL6A3-205ENST00000392004 FFAR2O15552 330 aa10.31□□□□□ -0.76
COL6A3-205ENST00000392004 VPS26AO75436 327 aa10.31□□□□□ -0.76
COL6A3-205ENST00000392004 FYNP06241 537 aa10.31□□□□□ -0.76
COL6A3-205ENST00000392004 DDX6P26196 483 aaKnown RBP eCLIP10.31□□□□□ -0.76
COL6A3-205ENST00000392004 GJA4P35212 333 aa10.31□□□□□ -0.76
COL6A3-205ENST00000392004 PTP4A2Q12974 167 aa10.31□□□□□ -0.76
COL6A3-205ENST00000392004 DYNC1I2Q13409 638 aaKnown RBP10.31□□□□□ -0.76
COL6A3-205ENST00000392004 CUL3Q13618 768 aa10.31□□□□□ -0.76
COL6A3-205ENST00000392004 ZNF852Q6ZMS4 543 aa10.31□□□□□ -0.76
COL6A3-205ENST00000392004 AHI1Q8N157 1196 aa10.31□□□□□ -0.76
COL6A3-205ENST00000392004 NTAN1Q96AB6 310 aa10.31□□□□□ -0.76
COL6A3-205ENST00000392004 CDCA3Q99618 268 aaPredicted RBP10.31□□□□□ -0.76
COL6A3-205ENST00000392004 LMAN2LQ9H0V9 348 aa10.31□□□□□ -0.76
COL6A3-205ENST00000392004 ABCG4Q9H172 646 aa10.31□□□□□ -0.76
COL6A3-205ENST00000392004 SUV39H2Q9H5I1 410 aa10.31□□□□□ -0.76
COL6A3-205ENST00000392004 ACTL7BQ9Y614 415 aa10.31□□□□□ -0.76
COL6A3-205ENST00000392004 LAMTOR5O43504 91 aa10.31□□□□□ -0.76
COL6A3-205ENST00000392004 KATNA1O75449 491 aa10.31□□□□□ -0.76
COL6A3-205ENST00000392004 FAM155BO75949 473 aa10.31□□□□□ -0.76
COL6A3-205ENST00000392004 SUPT7LO94864 414 aa10.31□□□□□ -0.76
COL6A3-205ENST00000392004 GNAZP19086 355 aa10.31□□□□□ -0.76
COL6A3-205ENST00000392004 HTR1BP28222 390 aa10.31□□□□□ -0.76
COL6A3-205ENST00000392004 PTPN4P29074 926 aa10.31□□□□□ -0.76
COL6A3-205ENST00000392004 HADHBP55084 474 aaKnown RBP10.31□□□□□ -0.76
COL6A3-205ENST00000392004 OCRLQ01968 901 aa10.31□□□□□ -0.76
COL6A3-205ENST00000392004 C1orf61Q13536 156 aa10.31□□□□□ -0.76
COL6A3-205ENST00000392004 CYP1B1Q16678 543 aa10.31□□□□□ -0.76
COL6A3-205ENST00000392004 C6orf163Q5TEZ5 329 aa10.31□□□□□ -0.76
COL6A3-205ENST00000392004 MFSD4BQ5TF39 518 aa10.31□□□□□ -0.76
COL6A3-205ENST00000392004 PM20D1Q6GTS8 502 aa10.31□□□□□ -0.76
COL6A3-205ENST00000392004 GPR149Q86SP6 731 aa10.31□□□□□ -0.76
COL6A3-205ENST00000392004 RIBC1Q8N443 379 aaPredicted RBP10.31□□□□□ -0.76
COL6A3-205ENST00000392004 AFAP1L2Q8N4X5 818 aa10.31□□□□□ -0.76
COL6A3-205ENST00000392004 ARFGAP1Q8N6T3 406 aa10.31□□□□□ -0.76
COL6A3-205ENST00000392004 OR52K2Q8NGK3 314 aa10.31□□□□□ -0.76
COL6A3-205ENST00000392004 SLC2A13Q96QE2 648 aa10.31□□□□□ -0.76
COL6A3-205ENST00000392004 LRRC19Q9H756 370 aa10.31□□□□□ -0.76
COL6A3-205ENST00000392004 RC3H2Q9HBD1 1191 aaKnown RBP10.31□□□□□ -0.76
COL6A3-205ENST00000392004 MYO10Q9HD67 2058 aa10.31□□□□□ -0.76
COL6A3-205ENST00000392004 BRCA1P38398 1863 aaKnown RBP10.31□□□□□ -0.76
COL6A3-205ENST00000392004 IFRD1O00458 451 aaPredicted RBP10.31□□□□□ -0.76
COL6A3-205ENST00000392004 MAP3K7O43318 606 aa10.31□□□□□ -0.76
COL6A3-205ENST00000392004 RPL10P27635 214 aaKnown RBP10.31□□□□□ -0.76
COL6A3-205ENST00000392004 HLA-FP30511 346 aa10.31□□□□□ -0.76
COL6A3-205ENST00000392004 CDH5P33151 784 aaPredicted RBP10.31□□□□□ -0.76
COL6A3-205ENST00000392004 ERFP50548 548 aa10.31□□□□□ -0.76
COL6A3-205ENST00000392004 RPS6KA3P51812 740 aa10.31□□□□□ -0.76
COL6A3-205ENST00000392004 C21orf59P57076 290 aa10.31□□□□□ -0.76
COL6A3-205ENST00000392004 CREB5Q02930 508 aa10.31□□□□□ -0.76
COL6A3-205ENST00000392004 IMPG1Q17R60 797 aa10.31□□□□□ -0.76
COL6A3-205ENST00000392004 LYSMD3Q7Z3D4 306 aa10.31□□□□□ -0.76
COL6A3-205ENST00000392004 ARHGAP24Q8N264 748 aa10.31□□□□□ -0.76
COL6A3-205ENST00000392004 FAM111AQ96PZ2 611 aa10.31□□□□□ -0.76
COL6A3-205ENST00000392004 WDR6Q9NNW5 1121 aaKnown RBP10.31□□□□□ -0.76
COL6A3-205ENST00000392004 GDE1Q9NZC3 331 aa10.31□□□□□ -0.76
COL6A3-205ENST00000392004 WWOXQ9NZC7 414 aa10.31□□□□□ -0.76
COL6A3-205ENST00000392004 ARHGAP26Q9UNA1 814 aa10.31□□□□□ -0.76
COL6A3-205ENST00000392004 CNTN6Q9UQ52 1028 aa10.31□□□□□ -0.76
COL6A3-205ENST00000392004 LZTS1Q9Y250 596 aa10.31□□□□□ -0.76
COL6A3-205ENST00000392004 LRCH1Q9Y2L9 728 aa10.31□□□□□ -0.76
COL6A3-205ENST00000392004 SIN3BO75182 1162 aa10.3□□□□□ -0.76
COL6A3-205ENST00000392004 ENTPD5O75356 428 aa10.3□□□□□ -0.76
COL6A3-205ENST00000392004 ZWINTO95229 277 aa10.3□□□□□ -0.76
COL6A3-205ENST00000392004 CBX6O95503 412 aa10.3□□□□□ -0.76
COL6A3-205ENST00000392004 EIF2S1P05198 315 aaKnown RBP10.3□□□□□ -0.76
COL6A3-205ENST00000392004 GABRB2P47870 512 aa10.3□□□□□ -0.76
COL6A3-205ENST00000392004 PGGT1BP53609 377 aa10.3□□□□□ -0.76
COL6A3-205ENST00000392004 HTRA4P83105 476 aaPredicted RBP10.3□□□□□ -0.76
COL6A3-205ENST00000392004 IL10RBQ08334 325 aa10.3□□□□□ -0.76
COL6A3-205ENST00000392004 MPP2Q14168 576 aa10.3□□□□□ -0.76
COL6A3-205ENST00000392004 EFTUD2Q15029 972 aaKnown RBP eCLIP10.3□□□□□ -0.76
COL6A3-205ENST00000392004 C22orf39Q6P5X5 142 aa10.3□□□□□ -0.76
COL6A3-205ENST00000392004 GALNT15Q8N3T1 639 aa10.3□□□□□ -0.76
COL6A3-205ENST00000392004 ZNF689Q96CS4 500 aaPredicted RBP10.3□□□□□ -0.76
COL6A3-205ENST00000392004 TEKT5Q96M29 485 aa10.3□□□□□ -0.76
COL6A3-205ENST00000392004 BTBD1Q9H0C5 482 aa10.3□□□□□ -0.76
COL6A3-205ENST00000392004 BRD8Q9H0E9 1235 aa10.3□□□□□ -0.76
COL6A3-205ENST00000392004 FAM83DQ9H4H8 585 aa10.3□□□□□ -0.76
COL6A3-205ENST00000392004 DNAJC28Q9NX36 388 aa10.3□□□□□ -0.76
COL6A3-205ENST00000392004 RPL26L1Q9UNX3 145 aaKnown RBP10.3□□□□□ -0.76
COL6A3-205ENST00000392004 SMG5Q9UPR3 1016 aaKnown RBP10.3□□□□□ -0.76
COL6A3-205ENST00000392004 SYNDIG1LA6NDD5 238 aa10.3□□□□□ -0.76
COL6A3-205ENST00000392004 MID1O15344 667 aa10.3□□□□□ -0.76
COL6A3-205ENST00000392004 PRAMEF1O95521 474 aa10.3□□□□□ -0.76
COL6A3-205ENST00000392004 SNRPAP09012 282 aaKnown RBP10.3□□□□□ -0.76
COL6A3-205ENST00000392004 EPB42P16452 691 aa10.3□□□□□ -0.76
COL6A3-205ENST00000392004 STMN1P16949 149 aa10.3□□□□□ -0.76
COL6A3-205ENST00000392004 ZNF7P17097 686 aaPredicted RBP10.3□□□□□ -0.76
COL6A3-205ENST00000392004 FOXN2P32314 431 aa10.3□□□□□ -0.76
COL6A3-205ENST00000392004 ZNF135P52742 658 aaPredicted RBP10.3□□□□□ -0.76
COL6A3-205ENST00000392004 RPL6Q02878 288 aaKnown RBP10.3□□□□□ -0.76
COL6A3-205ENST00000392004 GDPD4Q6W3E5 623 aa10.3□□□□□ -0.76
COL6A3-205ENST00000392004 CMC1Q7Z7K0 106 aa10.3□□□□□ -0.76
COL6A3-205ENST00000392004 GJD3Q8N144 294 aa10.3□□□□□ -0.76
COL6A3-205ENST00000392004 DCBLD1Q8N8Z6 715 aa10.3□□□□□ -0.76
COL6A3-205ENST00000392004 ZNF398Q8TD17 642 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms