RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 LSMEM2Q8N112 164 aa9.66□□□□□ -0.86
COL6A3-204ENST00000392003 KDM1BQ8NB78 822 aa9.66□□□□□ -0.86
COL6A3-204ENST00000392003 LILRB1Q8NHL6 650 aaPredicted RBP9.66□□□□□ -0.86
COL6A3-204ENST00000392003 FAM45AQ8TCE6 357 aa9.66□□□□□ -0.86
COL6A3-204ENST00000392003 SPPL2BQ8TCT7 592 aa9.66□□□□□ -0.86
COL6A3-204ENST00000392003 BLOC1S5Q8TDH9 187 aa9.66□□□□□ -0.86
COL6A3-204ENST00000392003 SEMA3CQ99985 751 aa9.66□□□□□ -0.86
COL6A3-204ENST00000392003 MRPL1Q9BYD6 325 aaKnown RBP9.66□□□□□ -0.86
COL6A3-204ENST00000392003 MFSD1Q9H3U5 465 aa9.66□□□□□ -0.86
COL6A3-204ENST00000392003 STK39Q9UEW8 545 aa9.66□□□□□ -0.86
COL6A3-204ENST00000392003 NEMP2A6NFY4 417 aa9.65□□□□□ -0.86
COL6A3-204ENST00000392003 F5H5T6 163 aa9.65□□□□□ -0.86
COL6A3-204ENST00000392003 AURKAO14965 403 aa9.65□□□□□ -0.86
COL6A3-204ENST00000392003 HLA-DPA1P20036 260 aa9.65□□□□□ -0.86
COL6A3-204ENST00000392003 PMLP29590 882 aa9.65□□□□□ -0.86
COL6A3-204ENST00000392003 CCT8P50990 548 aa9.65□□□□□ -0.86
COL6A3-204ENST00000392003 SIRPB2Q5JXA9 342 aa9.65□□□□□ -0.86
COL6A3-204ENST00000392003 VASH1Q7L8A9 365 aaPredicted RBP9.65□□□□□ -0.86
COL6A3-204ENST00000392003 CILP2Q8IUL8 1156 aa9.65□□□□□ -0.86
COL6A3-204ENST00000392003 GDPD5Q8WTR4 605 aa9.65□□□□□ -0.86
COL6A3-204ENST00000392003 FAM136AQ96C01 138 aa9.65□□□□□ -0.86
COL6A3-204ENST00000392003 PHF21BQ96EK2 531 aa9.65□□□□□ -0.86
COL6A3-204ENST00000392003 MARK4Q96L34 752 aa9.65□□□□□ -0.86
COL6A3-204ENST00000392003 B3GNT4Q9C0J1 378 aa9.65□□□□□ -0.86
COL6A3-204ENST00000392003 HIPK3Q9H422 1215 aa9.65□□□□□ -0.86
COL6A3-204ENST00000392003 WDR41Q9HAD4 459 aa9.65□□□□□ -0.86
COL6A3-204ENST00000392003 MRPL40Q9NQ50 206 aaKnown RBP9.65□□□□□ -0.86
COL6A3-204ENST00000392003 MTPAPQ9NVV4 582 aaKnown RBP eCLIP9.65□□□□□ -0.86
COL6A3-204ENST00000392003 H7C4K7 107 aa9.65□□□□□ -0.86
COL6A3-204ENST00000392003 B4GALT3O60512 393 aa9.65□□□□□ -0.86
COL6A3-204ENST00000392003 FGF1P05230 155 aa9.65□□□□□ -0.86
COL6A3-204ENST00000392003 MAPKAPK2P49137 400 aa9.65□□□□□ -0.86
COL6A3-204ENST00000392003 XIAPP98170 497 aa9.65□□□□□ -0.86
COL6A3-204ENST00000392003 PFKPQ01813 784 aa9.65□□□□□ -0.86
COL6A3-204ENST00000392003 CDC16Q13042 620 aa9.65□□□□□ -0.86
COL6A3-204ENST00000392003 STX5Q13190 355 aa9.65□□□□□ -0.86
COL6A3-204ENST00000392003 PPM1LQ5SGD2 360 aa9.65□□□□□ -0.86
COL6A3-204ENST00000392003 TMEM198Q66K66 360 aa9.65□□□□□ -0.86
COL6A3-204ENST00000392003 KBTBD2Q8IY47 623 aa9.65□□□□□ -0.86
COL6A3-204ENST00000392003 PGAM4Q8N0Y7 254 aa9.65□□□□□ -0.86
COL6A3-204ENST00000392003 RYBPQ8N488 228 aaPredicted RBP9.65□□□□□ -0.86
COL6A3-204ENST00000392003 GIPC2Q8TF65 315 aa9.65□□□□□ -0.86
COL6A3-204ENST00000392003 IGSF8Q969P0 613 aa9.65□□□□□ -0.86
COL6A3-204ENST00000392003 TMA16Q96EY4 203 aaKnown RBP9.65□□□□□ -0.86
COL6A3-204ENST00000392003 OLFM1Q99784 485 aa9.65□□□□□ -0.86
COL6A3-204ENST00000392003 MRPL9Q9BYD2 267 aaKnown RBP9.65□□□□□ -0.86
COL6A3-204ENST00000392003 ZBTB26Q9HCK0 441 aa9.65□□□□□ -0.86
COL6A3-204ENST00000392003 IGSF5Q9NSI5 407 aa9.65□□□□□ -0.86
COL6A3-204ENST00000392003 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP9.65□□□□□ -0.86
COL6A3-204ENST00000392003 A8MT66 165 aa9.65□□□□□ -0.87
COL6A3-204ENST00000392003 TXNDC9O14530 226 aa9.65□□□□□ -0.87
COL6A3-204ENST00000392003 ARHGAP33O14559 1287 aa9.65□□□□□ -0.87
COL6A3-204ENST00000392003 SUPT7LO94864 414 aa9.65□□□□□ -0.87
COL6A3-204ENST00000392003 PEX11BO96011 259 aa9.65□□□□□ -0.87
COL6A3-204ENST00000392003 SERPINF2P08697 491 aa9.65□□□□□ -0.87
COL6A3-204ENST00000392003 UBTFL6P0CB48 400 aaPredicted RBP9.65□□□□□ -0.87
COL6A3-204ENST00000392003 ME2P23368 584 aa9.65□□□□□ -0.87
COL6A3-204ENST00000392003 PLK1P53350 603 aa9.65□□□□□ -0.87
COL6A3-204ENST00000392003 MED21Q13503 144 aa9.65□□□□□ -0.87
COL6A3-204ENST00000392003 GEN1Q17RS7 908 aa9.65□□□□□ -0.87
COL6A3-204ENST00000392003 ZNF789Q5FWF6 425 aa9.65□□□□□ -0.87
COL6A3-204ENST00000392003 FUT10Q6P4F1 479 aa9.65□□□□□ -0.87
COL6A3-204ENST00000392003 LINC01599Q8WXQ3 324 aa9.65□□□□□ -0.87
COL6A3-204ENST00000392003 EXT2Q93063 718 aa9.65□□□□□ -0.87
COL6A3-204ENST00000392003 LRGUKQ96M69 825 aa9.65□□□□□ -0.87
COL6A3-204ENST00000392003 GBP5Q96PP8 586 aa9.65□□□□□ -0.87
COL6A3-204ENST00000392003 TRMOQ9BU70 441 aa9.65□□□□□ -0.87
COL6A3-204ENST00000392003 GPR62Q9BZJ7 368 aa9.65□□□□□ -0.87
COL6A3-204ENST00000392003 ATP13A1Q9HD20 1204 aa9.65□□□□□ -0.87
COL6A3-204ENST00000392003 PDP2Q9P2J9 529 aa9.65□□□□□ -0.87
COL6A3-204ENST00000392003 EPS15L1Q9UBC2 864 aa9.65□□□□□ -0.87
COL6A3-204ENST00000392003 PACSIN3Q9UKS6 424 aa9.65□□□□□ -0.87
COL6A3-204ENST00000392003 TTC3P53804 2025 aa9.64□□□□□ -0.87
COL6A3-204ENST00000392003 MYO16Q9Y6X6 1858 aa9.64□□□□□ -0.87
COL6A3-204ENST00000392003 IGLV3-10A0A075B6K4 115 aa9.64□□□□□ -0.87
COL6A3-204ENST00000392003 TMEM233B4DJY2 109 aa9.64□□□□□ -0.87
COL6A3-204ENST00000392003 SDHDO14521 159 aa9.64□□□□□ -0.87
COL6A3-204ENST00000392003 UBDO15205 165 aa9.64□□□□□ -0.87
COL6A3-204ENST00000392003 SORBS2O94875 1100 aaKnown RBP9.64□□□□□ -0.87
COL6A3-204ENST00000392003 STAMBPO95630 424 aa9.64□□□□□ -0.87
COL6A3-204ENST00000392003 STX1BP61266 288 aa9.64□□□□□ -0.87
COL6A3-204ENST00000392003 FAM189BP81408 668 aa9.64□□□□□ -0.87
COL6A3-204ENST00000392003 HPCAP84074 193 aa9.64□□□□□ -0.87
COL6A3-204ENST00000392003 SMARCB1Q12824 385 aa9.64□□□□□ -0.87
COL6A3-204ENST00000392003 RALGDSQ12967 914 aa9.64□□□□□ -0.87
COL6A3-204ENST00000392003 DUSP4Q13115 394 aa9.64□□□□□ -0.87
COL6A3-204ENST00000392003 SERINC3Q13530 473 aa9.64□□□□□ -0.87
COL6A3-204ENST00000392003 TMTC4Q5T4D3 741 aa9.64□□□□□ -0.87
COL6A3-204ENST00000392003 GALNT7Q86SF2 657 aa9.64□□□□□ -0.87
COL6A3-204ENST00000392003 CIR1Q86X95 450 aaPredicted RBP9.64□□□□□ -0.87
COL6A3-204ENST00000392003 LGI2Q8N0V4 545 aa9.64□□□□□ -0.87
COL6A3-204ENST00000392003 TEX26Q8N6G2 289 aa9.64□□□□□ -0.87
COL6A3-204ENST00000392003 ICA1LQ8NDH6 482 aa9.64□□□□□ -0.87
COL6A3-204ENST00000392003 FEM1CQ96JP0 617 aa9.64□□□□□ -0.87
COL6A3-204ENST00000392003 ZNF512Q96ME7 567 aaPredicted RBP9.64□□□□□ -0.87
COL6A3-204ENST00000392003 TRAPPC9Q96Q05 1148 aa9.64□□□□□ -0.87
COL6A3-204ENST00000392003 FERD3LQ96RJ6 166 aa9.64□□□□□ -0.87
COL6A3-204ENST00000392003 SPON2Q9BUD6 331 aa9.64□□□□□ -0.87
COL6A3-204ENST00000392003 ALG9Q9H6U8 611 aa9.64□□□□□ -0.87
COL6A3-204ENST00000392003 ZNF304Q9HCX3 659 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms