RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 EFR3BQ9Y2G0 817 aa12.79□□□□□ -0.36
CCDC88C-204ENST00000389857 ERCC2P18074 760 aa12.79□□□□□ -0.36
CCDC88C-204ENST00000389857 ATXN7L2Q5T6C5 722 aaPredicted RBP12.79□□□□□ -0.36
CCDC88C-204ENST00000389857 CYP2W1Q8TAV3 490 aa12.79□□□□□ -0.36
CCDC88C-204ENST00000389857 PFDN2Q9UHV9 154 aa12.79□□□□□ -0.36
CCDC88C-204ENST00000389857 TMEM150BA6NC51 233 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 C9P02748 559 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 PRKAR2AP13861 404 aaKnown RBP12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 PPP2R2BQ00005 443 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 BRMS1LQ5PSV4 323 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 UBR7Q8N806 425 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 FATE1Q969F0 183 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 ACO2Q99798 780 aaKnown RBP12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 PTCH2Q9Y6C5 1203 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 IQCJ-SCHIP1C9J366 451 aaPredicted RBP12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 PLK4O00444 970 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 ATG13O75143 517 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 TIPRLO75663 272 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 S100A6P06703 90 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 KCNA5P22460 613 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 CNTN2Q02246 1040 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 CCDC80Q76M96 950 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 COPS8Q99627 209 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 EBNA1BP2Q99848 306 aaKnown RBP12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 CHCHD6Q9BRQ6 235 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 RTKNQ9BST9 563 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 MUC13Q9H3R2 512 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 TMEM27Q9HBJ8 222 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 XIAPP98170 497 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 LAPTM5Q13571 262 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 IL18Q14116 193 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 MEA1Q16626 185 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 PERM1Q5SV97 790 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 TBC1D21Q8IYX1 336 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 GSDMCQ9BYG8 508 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 ADGRE2Q9UHX3 823 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 PCDHB9Q9Y5E1 797 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 RIC1Q4ADV7 1423 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 RLN1P04808 185 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 TAL1P17542 331 aaPredicted RBP12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 PTPRAP18433 802 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 SSR2P43308 183 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 ASMTP46597 345 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 AP3S2P59780 193 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 BMT2Q1RMZ1 405 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 FAM91A1Q658Y4 838 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 ERICH5Q6P6B1 374 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 ZCCHC12Q6PEW1 402 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 RASSF6Q6ZTQ3 369 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 SNX20Q7Z614 316 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 GALNT7Q86SF2 657 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 CREG2Q8IUH2 290 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 HDAC7Q8WUI4 952 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 BAP1Q92560 729 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 CDCA5Q96FF9 252 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 SPATA9Q9BWV2 254 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 CCDC59Q9P031 241 aaKnown RBP12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 WRBO00258 174 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 BUD23O43709 281 aaKnown RBP12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 GOT1P17174 413 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 PTDSS1P48651 473 aaKnown RBP12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 GPR107Q5VW38 600 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 POTEHQ6S545 545 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 POLNQ7Z5Q5 900 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 C12orf56Q8IXR9 622 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 PHC3Q8NDX5 983 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 EPS8L1Q8TE68 723 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 METTL21AQ8WXB1 218 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 SLC4A9Q96Q91 983 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 TRIM2Q9C040 744 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 IL17RBQ9NRM6 502 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 SNX15Q9NRS6 342 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 C2CD2Q9Y426 696 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 PCDHB1Q9Y5F3 818 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 TRBC1P01850 177 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 FOLH1Q04609 750 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 NTRK3Q16288 839 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 PSMD5Q16401 504 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 CPSF6Q16630 551 aaKnown RBP eCLIP12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 DDX59Q5T1V6 619 aaKnown RBP eCLIP12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 AKAP14Q86UN6 197 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 PHF13Q86YI8 300 aaPredicted RBP12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 PIGKQ92643 395 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 DUSP9Q99956 384 aaKnown RBP12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 COMMD3-BMI1R4GMX3 469 aa12.78□□□□□ -0.36
CCDC88C-204ENST00000389857 MDM4O15151 490 aa12.77□□□□□ -0.36
CCDC88C-204ENST00000389857 ZMPSTE24O75844 475 aa12.77□□□□□ -0.36
CCDC88C-204ENST00000389857 TGDSO95455 350 aa12.77□□□□□ -0.36
CCDC88C-204ENST00000389857 APODP05090 189 aa12.77□□□□□ -0.36
CCDC88C-204ENST00000389857 CYP4B1P13584 511 aa12.77□□□□□ -0.36
CCDC88C-204ENST00000389857 RPL5P46777 297 aaKnown RBP12.77□□□□□ -0.36
CCDC88C-204ENST00000389857 IL18R1Q13478 541 aa12.77□□□□□ -0.36
CCDC88C-204ENST00000389857 ATP13A5Q4VNC0 1218 aa12.77□□□□□ -0.36
CCDC88C-204ENST00000389857 C10orf107Q8IVU9 208 aa12.77□□□□□ -0.36
CCDC88C-204ENST00000389857 ADAMTS15Q8TE58 950 aa12.77□□□□□ -0.36
CCDC88C-204ENST00000389857 ART4Q93070 314 aa12.77□□□□□ -0.36
CCDC88C-204ENST00000389857 C5orf34Q96MH7 638 aa12.77□□□□□ -0.36
CCDC88C-204ENST00000389857 TCRBV5S4A2TA0A5A2 114 aa12.77□□□□□ -0.36
CCDC88C-204ENST00000389857 UBA1P22314 1058 aaKnown RBP12.77□□□□□ -0.36
CCDC88C-204ENST00000389857 RPL22P35268 128 aaKnown RBP12.77□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms