RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 DMP1Q13316 513 aaPredicted RBP2.2□□□□□ -2.06
VPS13A-206ENST00000376646 EIF2S3LQ2VIR3 472 aaKnown RBP2.2□□□□□ -2.06
VPS13A-206ENST00000376646 NAA35Q5VZE5 725 aa2.2□□□□□ -2.06
VPS13A-206ENST00000376646 FBXO46Q6PJ61 603 aaPredicted RBP2.2□□□□□ -2.06
VPS13A-206ENST00000376646 GPAT4Q86UL3 456 aa2.2□□□□□ -2.06
VPS13A-206ENST00000376646 FAM160B2Q86V87 743 aa2.2□□□□□ -2.06
VPS13A-206ENST00000376646 SFR1Q86XK3 245 aa2.2□□□□□ -2.06
VPS13A-206ENST00000376646 OR13A1Q8NGR1 328 aa2.2□□□□□ -2.06
VPS13A-206ENST00000376646 ZCCHC10Q8TBK6 192 aa2.2□□□□□ -2.06
VPS13A-206ENST00000376646 DUSP19Q8WTR2 217 aa2.2□□□□□ -2.06
VPS13A-206ENST00000376646 SH3KBP1Q96B97 665 aa2.2□□□□□ -2.06
VPS13A-206ENST00000376646 KIF1BPQ96EK5 621 aa2.2□□□□□ -2.06
VPS13A-206ENST00000376646 C7orf26Q96N11 449 aa2.2□□□□□ -2.06
VPS13A-206ENST00000376646 TTC14Q96N46 770 aa2.2□□□□□ -2.06
VPS13A-206ENST00000376646 UHRF2Q96PU4 802 aa2.2□□□□□ -2.06
VPS13A-206ENST00000376646 LBHD1Q9BQE6 289 aaPredicted RBP2.2□□□□□ -2.06
VPS13A-206ENST00000376646 MXRA8Q9BRK3 442 aa2.2□□□□□ -2.06
VPS13A-206ENST00000376646 HAUS8Q9BT25 410 aa2.2□□□□□ -2.06
VPS13A-206ENST00000376646 SLC25A18Q9H1K4 315 aa2.2□□□□□ -2.06
VPS13A-206ENST00000376646 SNTG1Q9NSN8 517 aa2.2□□□□□ -2.06
VPS13A-206ENST00000376646 SLC25A10Q9UBX3 287 aaPredicted RBP2.2□□□□□ -2.06
VPS13A-206ENST00000376646 VDAC3Q9Y277 283 aa2.2□□□□□ -2.06
VPS13A-206ENST00000376646 NOTCH3Q9UM47 2321 aa2.2□□□□□ -2.06
VPS13A-206ENST00000376646 A0A087X0M5 115 aa2.2□□□□□ -2.06
VPS13A-206ENST00000376646 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP2.2□□□□□ -2.06
VPS13A-206ENST00000376646 A0A1B0GX30 115 aa2.2□□□□□ -2.06
VPS13A-206ENST00000376646 TEX22C9J3V5 150 aa2.2□□□□□ -2.06
VPS13A-206ENST00000376646 P2RY10O00398 339 aa2.2□□□□□ -2.06
VPS13A-206ENST00000376646 BCAT2O15382 392 aaPredicted RBP2.2□□□□□ -2.06
VPS13A-206ENST00000376646 CYC1P08574 325 aa2.2□□□□□ -2.06
VPS13A-206ENST00000376646 FGF5P12034 268 aa2.2□□□□□ -2.06
VPS13A-206ENST00000376646 ZNF8P17098 575 aaPredicted RBP2.2□□□□□ -2.06
VPS13A-206ENST00000376646 GLIPR1P48060 266 aa2.2□□□□□ -2.06
VPS13A-206ENST00000376646 EIF5P55010 431 aaKnown RBP2.2□□□□□ -2.06
VPS13A-206ENST00000376646 ITGADQ13349 1161 aa2.2□□□□□ -2.06
VPS13A-206ENST00000376646 PRICKLE4Q2TBC4 344 aa2.2□□□□□ -2.06
VPS13A-206ENST00000376646 ATP13A5Q4VNC0 1218 aa2.2□□□□□ -2.06
VPS13A-206ENST00000376646 SLC45A4Q5BKX6 768 aa2.2□□□□□ -2.06
VPS13A-206ENST00000376646 ZNF766Q5HY98 468 aa2.2□□□□□ -2.06
VPS13A-206ENST00000376646 CEP85LQ5SZL2 805 aa2.2□□□□□ -2.06
VPS13A-206ENST00000376646 NEK10Q6ZWH5 1172 aa2.2□□□□□ -2.06
VPS13A-206ENST00000376646 SLC26A9Q7LBE3 791 aa2.2□□□□□ -2.06
VPS13A-206ENST00000376646 ANKRD52Q8NB46 1076 aa2.2□□□□□ -2.06
VPS13A-206ENST00000376646 TNIP2Q8NFZ5 429 aa2.2□□□□□ -2.06
VPS13A-206ENST00000376646 SLC20A1Q8WUM9 679 aa2.2□□□□□ -2.06
VPS13A-206ENST00000376646 FEM1CQ96JP0 617 aa2.2□□□□□ -2.06
VPS13A-206ENST00000376646 BARD1Q99728 777 aaKnown RBP2.2□□□□□ -2.06
VPS13A-206ENST00000376646 PDCL3Q9H2J4 239 aa2.2□□□□□ -2.06
VPS13A-206ENST00000376646 PCDHB16Q9NRJ7 776 aa2.2□□□□□ -2.06
VPS13A-206ENST00000376646 BEX4Q9NWD9 120 aaPredicted RBP2.2□□□□□ -2.06
VPS13A-206ENST00000376646 GAB2Q9UQC2 676 aa2.2□□□□□ -2.06
VPS13A-206ENST00000376646 NFE2L3Q9Y4A8 694 aa2.2□□□□□ -2.06
VPS13A-206ENST00000376646 PDS5AQ29RF7 1337 aaKnown RBP2.19□□□□□ -2.06
VPS13A-206ENST00000376646 USO1O60763 962 aaKnown RBP2.19□□□□□ -2.06
VPS13A-206ENST00000376646 UBL4AP11441 157 aa2.19□□□□□ -2.06
VPS13A-206ENST00000376646 ITGA2P17301 1181 aa2.19□□□□□ -2.06
VPS13A-206ENST00000376646 STX2P32856 288 aa2.19□□□□□ -2.06
VPS13A-206ENST00000376646 GPD2P43304 727 aa2.19□□□□□ -2.06
VPS13A-206ENST00000376646 HARS2P49590 506 aaKnown RBP2.19□□□□□ -2.06
VPS13A-206ENST00000376646 KRTAP10-12P60413 245 aa2.19□□□□□ -2.06
VPS13A-206ENST00000376646 UFM1P61960 85 aa2.19□□□□□ -2.06
VPS13A-206ENST00000376646 DCAF7P61962 342 aa2.19□□□□□ -2.06
VPS13A-206ENST00000376646 PHEXP78562 749 aa2.19□□□□□ -2.06
VPS13A-206ENST00000376646 DCTN2Q13561 401 aaKnown RBP2.19□□□□□ -2.06
VPS13A-206ENST00000376646 STXBP5Q5T5C0 1151 aa2.19□□□□□ -2.06
VPS13A-206ENST00000376646 ATF7IPQ6VMQ6 1270 aa2.19□□□□□ -2.06
VPS13A-206ENST00000376646 C4orf50Q6ZRC1 276 aa2.19□□□□□ -2.06
VPS13A-206ENST00000376646 CPLX4Q7Z7G2 160 aa2.19□□□□□ -2.06
VPS13A-206ENST00000376646 PCGF5Q86SE9 256 aa2.19□□□□□ -2.06
VPS13A-206ENST00000376646 TDRPQ86YL5 185 aa2.19□□□□□ -2.06
VPS13A-206ENST00000376646 CNTROBQ8N137 903 aa2.19□□□□□ -2.06
VPS13A-206ENST00000376646 OR2AK2Q8NG84 335 aa2.19□□□□□ -2.06
VPS13A-206ENST00000376646 SNAPC3Q92966 411 aa2.19□□□□□ -2.06
VPS13A-206ENST00000376646 HES6Q96HZ4 224 aa2.19□□□□□ -2.06
VPS13A-206ENST00000376646 PCYT2Q99447 389 aa2.19□□□□□ -2.06
VPS13A-206ENST00000376646 KXD1Q9BQD3 176 aa2.19□□□□□ -2.06
VPS13A-206ENST00000376646 CHCHD6Q9BRQ6 235 aa2.19□□□□□ -2.06
VPS13A-206ENST00000376646 KCNN2Q9H2S1 579 aa2.19□□□□□ -2.06
VPS13A-206ENST00000376646 ESRP2Q9H6T0 727 aaKnown RBP2.19□□□□□ -2.06
VPS13A-206ENST00000376646 PLEKHA5Q9HAU0 1116 aa2.19□□□□□ -2.06
VPS13A-206ENST00000376646 BABAM1Q9NWV8 329 aa2.19□□□□□ -2.06
VPS13A-206ENST00000376646 RCOR1Q9UKL0 485 aa2.19□□□□□ -2.06
VPS13A-206ENST00000376646 RALYQ9UKM9 306 aaKnown RBP2.19□□□□□ -2.06
VPS13A-206ENST00000376646 CGNL1Q0VF96 1302 aa2.19□□□□□ -2.06
VPS13A-206ENST00000376646 GOLGA6L10A0A0M3HER8 536 aa2.19□□□□□ -2.06
VPS13A-206ENST00000376646 PGPEP1LA6NFU8 196 aa2.19□□□□□ -2.06
VPS13A-206ENST00000376646 GAGE10A6NGK3 116 aa2.19□□□□□ -2.06
VPS13A-206ENST00000376646 C16orf97H3BN30 126 aa2.19□□□□□ -2.06
VPS13A-206ENST00000376646 WNT9BO14905 357 aa2.19□□□□□ -2.06
VPS13A-206ENST00000376646 RNASEH2AO75792 299 aaKnown RBP2.19□□□□□ -2.06
VPS13A-206ENST00000376646 GAGE7O76087 117 aa2.19□□□□□ -2.06
VPS13A-206ENST00000376646 DDX58O95786 925 aaKnown RBP2.19□□□□□ -2.06
VPS13A-206ENST00000376646 AMBPP02760 352 aa2.19□□□□□ -2.06
VPS13A-206ENST00000376646 ATP1A1P05023 1023 aaKnown RBP2.19□□□□□ -2.06
VPS13A-206ENST00000376646 LDHCP07864 332 aa2.19□□□□□ -2.06
VPS13A-206ENST00000376646 GAGE12FP0CL80 117 aa2.19□□□□□ -2.06
VPS13A-206ENST00000376646 GAGE12GP0CL81 117 aa2.19□□□□□ -2.06
VPS13A-206ENST00000376646 GAGE12IP0CL82 117 aa2.19□□□□□ -2.06
VPS13A-206ENST00000376646 CETPP11597 493 aa2.19□□□□□ -2.06
VPS13A-206ENST00000376646 CDH1P12830 882 aa2.19□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms