RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 SARM1Q6SZW1 724 aa21.67■■□□□ 1.06
CCDC28B-201ENST00000373602 LRRC69Q6ZNQ3 347 aa21.67■■□□□ 1.06
CCDC28B-201ENST00000373602 CCDC74AQ96AQ1 378 aa21.67■■□□□ 1.06
CCDC28B-201ENST00000373602 ZNF578Q96N58 590 aaPredicted RBP21.67■■□□□ 1.06
CCDC28B-201ENST00000373602 LGMNQ99538 433 aa21.67■■□□□ 1.06
CCDC28B-201ENST00000373602 FRMD8Q9BZ67 464 aaPredicted RBP21.67■■□□□ 1.06
CCDC28B-201ENST00000373602 RABGEF1Q9UJ41 708 aa21.67■■□□□ 1.06
CCDC28B-201ENST00000373602 CHKBQ9Y259 395 aa21.67■■□□□ 1.06
CCDC28B-201ENST00000373602 DSPP15924 2871 aaKnown RBP21.67■■□□□ 1.06
CCDC28B-201ENST00000373602 CELSR3Q9NYQ7 3312 aa21.66■■□□□ 1.06
CCDC28B-201ENST00000373602 RRP8O43159 456 aaKnown RBP21.66■■□□□ 1.06
CCDC28B-201ENST00000373602 JCHAINP01591 159 aa21.66■■□□□ 1.06
CCDC28B-201ENST00000373602 FUCA1P04066 466 aa21.66■■□□□ 1.06
CCDC28B-201ENST00000373602 CA4P22748 312 aa21.66■■□□□ 1.06
CCDC28B-201ENST00000373602 ITPKBP27987 946 aa21.66■■□□□ 1.06
CCDC28B-201ENST00000373602 SLC1A1P43005 524 aa21.66■■□□□ 1.06
CCDC28B-201ENST00000373602 EPHB1P54762 984 aa21.66■■□□□ 1.06
CCDC28B-201ENST00000373602 RPL26P61254 145 aaKnown RBP21.66■■□□□ 1.06
CCDC28B-201ENST00000373602 IFI35P80217 286 aaPredicted RBP21.66■■□□□ 1.06
CCDC28B-201ENST00000373602 PTSQ03393 145 aa21.66■■□□□ 1.06
CCDC28B-201ENST00000373602 SPIDRQ14159 915 aa21.66■■□□□ 1.06
CCDC28B-201ENST00000373602 RAET1GQ6H3X3 334 aa21.66■■□□□ 1.06
CCDC28B-201ENST00000373602 RFLNAQ6ZTI6 216 aa21.66■■□□□ 1.06
CCDC28B-201ENST00000373602 NLRP8Q86W28 1048 aa21.66■■□□□ 1.06
CCDC28B-201ENST00000373602 FAM46DQ8NEK8 389 aa21.66■■□□□ 1.06
CCDC28B-201ENST00000373602 CCL4L1Q8NHW4 92 aa21.66■■□□□ 1.06
CCDC28B-201ENST00000373602 ATXN7L3BQ96GX2 97 aa21.66■■□□□ 1.06
CCDC28B-201ENST00000373602 ABCG8Q9H221 673 aa21.66■■□□□ 1.06
CCDC28B-201ENST00000373602 CARS2Q9HA77 564 aaKnown RBP21.66■■□□□ 1.06
CCDC28B-201ENST00000373602 DNPEPQ9ULA0 475 aa21.66■■□□□ 1.06
CCDC28B-201ENST00000373602 RPL26L1Q9UNX3 145 aaKnown RBP21.66■■□□□ 1.06
CCDC28B-201ENST00000373602 A0A1W2PNU3 283 aaPredicted RBP21.65■■□□□ 1.06
CCDC28B-201ENST00000373602 GOLGA6CA6NDK9 693 aa21.65■■□□□ 1.06
CCDC28B-201ENST00000373602 GOLGA6BA6NDN3 693 aa21.65■■□□□ 1.06
CCDC28B-201ENST00000373602 CAPN8A6NHC0 703 aa21.65■■□□□ 1.06
CCDC28B-201ENST00000373602 KCNK1O00180 336 aa21.65■■□□□ 1.06
CCDC28B-201ENST00000373602 NOBOXO60393 691 aa21.65■■□□□ 1.06
CCDC28B-201ENST00000373602 GOLGA6DP0CG33 693 aa21.65■■□□□ 1.06
CCDC28B-201ENST00000373602 PDX1P52945 283 aa21.65■■□□□ 1.06
CCDC28B-201ENST00000373602 IGF2-ASQ6U949 168 aa21.65■■□□□ 1.06
CCDC28B-201ENST00000373602 ZNF765Q7L2R6 523 aa21.65■■□□□ 1.06
CCDC28B-201ENST00000373602 TRAF3IP1Q8TDR0 691 aaPredicted RBP21.65■■□□□ 1.06
CCDC28B-201ENST00000373602 GPBAR1Q8TDU6 330 aa21.65■■□□□ 1.06
CCDC28B-201ENST00000373602 AP2M1Q96CW1 435 aa21.65■■□□□ 1.06
CCDC28B-201ENST00000373602 MAK16Q9BXY0 300 aaKnown RBP21.65■■□□□ 1.06
CCDC28B-201ENST00000373602 PCDH9Q9HC56 1237 aa21.65■■□□□ 1.06
CCDC28B-201ENST00000373602 GOLGA6AQ9NYA3 693 aa21.65■■□□□ 1.06
CCDC28B-201ENST00000373602 SATB2Q9UPW6 733 aa21.65■■□□□ 1.06
CCDC28B-201ENST00000373602 HEY1Q9Y5J3 304 aa21.65■■□□□ 1.06
CCDC28B-201ENST00000373602 LAMA5O15230 3695 aa21.65■■□□□ 1.06
CCDC28B-201ENST00000373602 CACNA1GO43497 2377 aa21.64■■□□□ 1.05
CCDC28B-201ENST00000373602 APOL1O14791 398 aa21.64■■□□□ 1.05
CCDC28B-201ENST00000373602 SOD1P00441 154 aa21.64■■□□□ 1.05
CCDC28B-201ENST00000373602 KRT1P04264 644 aa21.64■■□□□ 1.05
CCDC28B-201ENST00000373602 MMP2P08253 660 aa21.64■■□□□ 1.05
CCDC28B-201ENST00000373602 GPR1P46091 355 aa21.64■■□□□ 1.05
CCDC28B-201ENST00000373602 STC1P52823 247 aa21.64■■□□□ 1.05
CCDC28B-201ENST00000373602 ERVPABLB-1P60509 514 aa21.64■■□□□ 1.05
CCDC28B-201ENST00000373602 ZBTB17Q13105 803 aa21.64■■□□□ 1.05
CCDC28B-201ENST00000373602 C3orf38Q5JPI3 329 aa21.64■■□□□ 1.05
CCDC28B-201ENST00000373602 CERCAMQ5T4B2 595 aa21.64■■□□□ 1.05
CCDC28B-201ENST00000373602 ADAMTSL4Q6UY14 1074 aa21.64■■□□□ 1.05
CCDC28B-201ENST00000373602 RHOT1Q8IXI2 618 aa21.64■■□□□ 1.05
CCDC28B-201ENST00000373602 RAVER1Q8IY67 606 aaKnown RBP21.64■■□□□ 1.05
CCDC28B-201ENST00000373602 CNTD1Q8N815 330 aa21.64■■□□□ 1.05
CCDC28B-201ENST00000373602 TC2NQ8N9U0 490 aa21.64■■□□□ 1.05
CCDC28B-201ENST00000373602 LPCAT1Q8NF37 534 aa21.64■■□□□ 1.05
CCDC28B-201ENST00000373602 CRELD1Q96HD1 420 aa21.64■■□□□ 1.05
CCDC28B-201ENST00000373602 HIC2Q96JB3 615 aa21.64■■□□□ 1.05
CCDC28B-201ENST00000373602 OLFM3Q96PB7 478 aa21.64■■□□□ 1.05
CCDC28B-201ENST00000373602 LYSMD1Q96S90 227 aa21.64■■□□□ 1.05
CCDC28B-201ENST00000373602 TRIM5Q9C035 493 aa21.64■■□□□ 1.05
CCDC28B-201ENST00000373602 ASCL3Q9NQ33 180 aa21.64■■□□□ 1.05
CCDC28B-201ENST00000373602 TRNAU1APQ9NX07 287 aaKnown RBP21.64■■□□□ 1.05
CCDC28B-201ENST00000373602 DDX56Q9NY93 547 aaKnown RBP21.64■■□□□ 1.05
CCDC28B-201ENST00000373602 CD84Q9UIB8 345 aa21.64■■□□□ 1.05
CCDC28B-201ENST00000373602 SLC17A4Q9Y2C5 497 aa21.64■■□□□ 1.05
CCDC28B-201ENST00000373602 GLB1P16278 677 aa21.63■■□□□ 1.05
CCDC28B-201ENST00000373602 ZFXP17010 805 aaPredicted RBP21.63■■□□□ 1.05
CCDC28B-201ENST00000373602 CCL7P80098 99 aa21.63■■□□□ 1.05
CCDC28B-201ENST00000373602 SKOR1P84550 965 aa21.63■■□□□ 1.05
CCDC28B-201ENST00000373602 PDK1Q15118 436 aa21.63■■□□□ 1.05
CCDC28B-201ENST00000373602 C14orf28Q4W4Y0 310 aa21.63■■□□□ 1.05
CCDC28B-201ENST00000373602 NRROSQ86YC3 692 aa21.63■■□□□ 1.05
CCDC28B-201ENST00000373602 SFTPA2Q8IWL1 248 aa21.63■■□□□ 1.05
CCDC28B-201ENST00000373602 NRSN1Q8IZ57 195 aa21.63■■□□□ 1.05
CCDC28B-201ENST00000373602 PTCD2Q8WV60 388 aaKnown RBP21.63■■□□□ 1.05
CCDC28B-201ENST00000373602 SCAMP4Q969E2 229 aa21.63■■□□□ 1.05
CCDC28B-201ENST00000373602 RNF25Q96BH1 459 aaPredicted RBP21.63■■□□□ 1.05
CCDC28B-201ENST00000373602 GFM1Q96RP9 751 aaKnown RBP21.63■■□□□ 1.05
CCDC28B-201ENST00000373602 ANP32EQ9BTT0 268 aa21.63■■□□□ 1.05
CCDC28B-201ENST00000373602 GSDMCQ9BYG8 508 aa21.63■■□□□ 1.05
CCDC28B-201ENST00000373602 DPEP2Q9H4A9 486 aa21.63■■□□□ 1.05
CCDC28B-201ENST00000373602 SYNDIG1Q9H7V2 258 aa21.63■■□□□ 1.05
CCDC28B-201ENST00000373602 APPL1Q9UKG1 709 aa21.63■■□□□ 1.05
CCDC28B-201ENST00000373602 SUFUQ9UMX1 484 aa21.63■■□□□ 1.05
CCDC28B-201ENST00000373602 HYOU1Q9Y4L1 999 aa21.63■■□□□ 1.05
CCDC28B-201ENST00000373602 PCDHGA8Q9Y5G5 932 aa21.63■■□□□ 1.05
CCDC28B-201ENST00000373602 A0A1W2PQM1 296 aa21.62■■□□□ 1.05
CCDC28B-201ENST00000373602 B4DGG1 531 aa21.62■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms