RNA–Protein interactions for RNA: ENST00000360280.7

VPS13A-203, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13A, Length 15,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-203ENST00000360280 NAT14Q8WUY8 206 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 NXF3Q9H4D5 531 aaKnown RBP9.29□□□□□ -0.92
VPS13A-203ENST00000360280 TMEM165Q9HC07 324 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 NKIRAS2Q9NYR9 191 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 HDAC3O15379 428 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 TULP3O75386 442 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 PET100P0DJ07 73 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 SNRPD1P62314 119 aaKnown RBP9.29□□□□□ -0.92
VPS13A-203ENST00000360280 FSCN1Q16658 493 aaKnown RBP9.29□□□□□ -0.92
VPS13A-203ENST00000360280 HMBOX1Q6NT76 420 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 NXPE2Q96DL1 559 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 MAT2BQ9NZL9 334 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 C2orf71A6NGG8 1288 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 H7C2Y5 167 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 MAPTP10636 758 aaKnown RBP9.29□□□□□ -0.92
VPS13A-203ENST00000360280 NOS2P35228 1153 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 NAGLUP54802 743 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 LARS2Q15031 903 aaKnown RBP9.29□□□□□ -0.92
VPS13A-203ENST00000360280 CEP76Q8TAP6 659 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 GLT1D1Q96MS3 346 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 RC3H2Q9HBD1 1191 aaKnown RBP9.29□□□□□ -0.92
VPS13A-203ENST00000360280 MTPAPQ9NVV4 582 aaKnown RBP eCLIP9.29□□□□□ -0.92
VPS13A-203ENST00000360280 CHD1O14646 1710 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 DBIP07108 87 aaKnown RBP9.29□□□□□ -0.92
VPS13A-203ENST00000360280 SREBF2Q12772 1141 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 MTX3Q5HYI7 312 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 PRR23CQ6ZRP0 262 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 FCGR1BQ92637 280 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 PCYOX1Q9UHG3 505 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 AGRPO00253 132 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 ANGPTL1O95841 491 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 PAX3P23760 479 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 ATXN1P54253 815 aaKnown RBP9.29□□□□□ -0.92
VPS13A-203ENST00000360280 EGFLAMQ63HQ2 1017 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 PSTKQ8IV42 348 aaKnown RBP9.29□□□□□ -0.92
VPS13A-203ENST00000360280 TRMOQ9BU70 441 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 KBTBD4Q9NVX7 518 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 KANSL3Q9P2N6 904 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 SNCAIPQ9Y6H5 919 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 MAU2Q9Y6X3 613 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 CETPP11597 493 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 CYP2C18P33260 490 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 GXYLT1Q4G148 440 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 ATP13A3Q9H7F0 1226 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 BRD9Q9H8M2 597 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 GABRB2P47870 512 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 NPTX2P47972 431 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 RNASE12Q5GAN4 147 aaKnown RBP9.29□□□□□ -0.92
VPS13A-203ENST00000360280 THAP5Q7Z6K1 395 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 GALNT7Q86SF2 657 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 UBR7Q8N806 425 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 PIGBQ92521 554 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 NXNL1Q96CM4 212 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 FBXO9Q9UK97 447 aaPredicted RBP9.29□□□□□ -0.92
VPS13A-203ENST00000360280 TTC34A8MYJ7 566 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 RPS2P15880 293 aaKnown RBP9.29□□□□□ -0.92
VPS13A-203ENST00000360280 KLHL22Q53GT1 634 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 TTI2Q6NXR4 508 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 KCNT2Q6UVM3 1135 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 SPATA19Q7Z5L4 167 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 SPATA20Q8TB22 786 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 SNX33Q8WV41 574 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 CLPTM1LQ96KA5 538 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 ZDHHC6Q9H6R6 413 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 C5orf51A6NDU8 294 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 DCDC2CA8MYV0 355 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 PHC1P78364 1004 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 ILF3Q12906 894 aaKnown RBP eCLIP9.29□□□□□ -0.92
VPS13A-203ENST00000360280 DPYSL3Q14195 570 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 HLFQ16534 295 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 RANBP3LQ86VV4 465 aaPredicted RBP9.29□□□□□ -0.92
VPS13A-203ENST00000360280 PTTG2Q9NZH5 202 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 KIAA1210Q9ULL0 1709 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 KAT7O95251 611 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 RPLP0P05388 317 aaKnown RBP9.29□□□□□ -0.92
VPS13A-203ENST00000360280 HOXC6P09630 235 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 MTHFD1P11586 935 aaKnown RBP9.29□□□□□ -0.92
VPS13A-203ENST00000360280 EPHA3P29320 983 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 AP5B1Q2VPB7 878 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 APTXQ7Z2E3 356 aaKnown RBP9.29□□□□□ -0.92
VPS13A-203ENST00000360280 OR2T12Q8NG77 320 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 FFAR3O14843 346 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 GPR42O15529 346 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 PPM1BO75688 479 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 ZNF720Q7Z2F6 126 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 DNAJB7Q7Z6W7 309 aaPredicted RBP9.29□□□□□ -0.92
VPS13A-203ENST00000360280 SLC5A5Q92911 643 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 NEPROQ6NW34 567 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 EFCAB3Q8N7B9 438 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 PNLDC1Q8NA58 520 aaKnown RBP9.29□□□□□ -0.92
VPS13A-203ENST00000360280 DDX43Q9NXZ2 648 aaKnown RBP9.29□□□□□ -0.92
VPS13A-203ENST00000360280 IKZF2Q9UKS7 526 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 CFL2Q9Y281 166 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 PCDHGB5Q9Y5G0 923 aa9.29□□□□□ -0.92
VPS13A-203ENST00000360280 L7N2F9 121 aa9.28□□□□□ -0.92
VPS13A-203ENST00000360280 VAMP2P63027 116 aa9.28□□□□□ -0.92
VPS13A-203ENST00000360280 KCNJ2P63252 427 aa9.28□□□□□ -0.92
VPS13A-203ENST00000360280 TMEM44Q2T9K0 475 aa9.28□□□□□ -0.92
VPS13A-203ENST00000360280 TIGD4Q8IY51 512 aa9.28□□□□□ -0.92
VPS13A-203ENST00000360280 POPDC2Q9HBU9 364 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms