RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 PHACTR4Q8IZ21 702 aa19.53■□□□□ 0.72
CCDC88B-202ENST00000356786 CD101Q93033 1021 aa19.53■□□□□ 0.72
CCDC88B-202ENST00000356786 SLC28A1O00337 649 aa19.53■□□□□ 0.72
CCDC88B-202ENST00000356786 PSIP1O75475 530 aaKnown RBP19.53■□□□□ 0.72
CCDC88B-202ENST00000356786 DACT2Q5SW24 774 aa19.53■□□□□ 0.72
CCDC88B-202ENST00000356786 TMEM214Q6NUQ4 689 aaKnown RBP19.53■□□□□ 0.72
CCDC88B-202ENST00000356786 OOSP2Q86WS3 158 aa19.53■□□□□ 0.72
CCDC88B-202ENST00000356786 EGFL6Q8IUX8 553 aa19.53■□□□□ 0.72
CCDC88B-202ENST00000356786 HM13Q8TCT9 377 aa19.53■□□□□ 0.72
CCDC88B-202ENST00000356786 NELL1Q92832 810 aa19.53■□□□□ 0.72
CCDC88B-202ENST00000356786 C1GALT1C1Q96EU7 318 aa19.53■□□□□ 0.72
CCDC88B-202ENST00000356786 ALG2Q9H553 416 aa19.53■□□□□ 0.72
CCDC88B-202ENST00000356786 TCHHQ07283 1943 aa19.53■□□□□ 0.72
CCDC88B-202ENST00000356786 ALDH1A2O94788 518 aa19.53■□□□□ 0.72
CCDC88B-202ENST00000356786 PRKAG1P54619 331 aa19.53■□□□□ 0.72
CCDC88B-202ENST00000356786 POU5F1Q01860 360 aaKnown RBP19.53■□□□□ 0.72
CCDC88B-202ENST00000356786 BCL2L1Q07817 233 aa19.53■□□□□ 0.72
CCDC88B-202ENST00000356786 AP5B1Q2VPB7 878 aa19.53■□□□□ 0.72
CCDC88B-202ENST00000356786 EEF1DP3Q658K8 133 aa19.53■□□□□ 0.72
CCDC88B-202ENST00000356786 TRMT10BQ6PF06 316 aaKnown RBP19.53■□□□□ 0.72
CCDC88B-202ENST00000356786 MTSS1LQ765P7 747 aa19.53■□□□□ 0.72
CCDC88B-202ENST00000356786 TTLL13PA6NNM8 815 aa19.52■□□□□ 0.72
CCDC88B-202ENST00000356786 H3BSA7 217 aa19.52■□□□□ 0.72
CCDC88B-202ENST00000356786 TRIM32Q13049 653 aa19.52■□□□□ 0.72
CCDC88B-202ENST00000356786 PITRM1Q5JRX3 1037 aa19.52■□□□□ 0.72
CCDC88B-202ENST00000356786 ZYG11AQ6WRX3 759 aa19.52■□□□□ 0.72
CCDC88B-202ENST00000356786 KRT77Q7Z794 578 aa19.52■□□□□ 0.72
CCDC88B-202ENST00000356786 ITCHQ96J02 903 aa19.52■□□□□ 0.72
CCDC88B-202ENST00000356786 TDRD1Q9BXT4 1180 aaKnown RBP19.52■□□□□ 0.72
CCDC88B-202ENST00000356786 SDCBP2Q9H190 292 aa19.52■□□□□ 0.72
CCDC88B-202ENST00000356786 ABCB9Q9NP78 766 aa19.52■□□□□ 0.72
CCDC88B-202ENST00000356786 CCDC59Q9P031 241 aaKnown RBP19.52■□□□□ 0.72
CCDC88B-202ENST00000356786 TIMM22Q9Y584 194 aa19.52■□□□□ 0.72
CCDC88B-202ENST00000356786 CATP04040 527 aaKnown RBP19.52■□□□□ 0.72
CCDC88B-202ENST00000356786 CHRNB2P17787 502 aa19.52■□□□□ 0.72
CCDC88B-202ENST00000356786 ARL4DP49703 201 aa19.52■□□□□ 0.72
CCDC88B-202ENST00000356786 CA9Q16790 459 aa19.52■□□□□ 0.72
CCDC88B-202ENST00000356786 NLNQ9BYT8 704 aa19.52■□□□□ 0.72
CCDC88B-202ENST00000356786 CIPCQ9C0C6 399 aa19.52■□□□□ 0.72
CCDC88B-202ENST00000356786 MARCH2Q9P0N8 246 aa19.52■□□□□ 0.72
CCDC88B-202ENST00000356786 DHFRP00374 187 aa19.52■□□□□ 0.71
CCDC88B-202ENST00000356786 FSTL4Q6MZW2 842 aa19.52■□□□□ 0.71
CCDC88B-202ENST00000356786 DRICH1Q6PGQ1 229 aaPredicted RBP19.52■□□□□ 0.71
CCDC88B-202ENST00000356786 CHCHD6Q9BRQ6 235 aa19.52■□□□□ 0.71
CCDC88B-202ENST00000356786 SAMD4AQ9UPU9 718 aaKnown RBP19.52■□□□□ 0.71
CCDC88B-202ENST00000356786 ATRNO75882 1429 aa19.52■□□□□ 0.71
CCDC88B-202ENST00000356786 UMPSP11172 480 aa19.51■□□□□ 0.71
CCDC88B-202ENST00000356786 POLR2JP52435 117 aaKnown RBP19.51■□□□□ 0.71
CCDC88B-202ENST00000356786 PSMD4P55036 377 aaKnown RBP19.51■□□□□ 0.71
CCDC88B-202ENST00000356786 BICRALQ6AI39 1079 aa19.51■□□□□ 0.71
CCDC88B-202ENST00000356786 ARMC6Q6NXE6 501 aa19.51■□□□□ 0.71
CCDC88B-202ENST00000356786 AFTPHQ6ULP2 937 aa19.51■□□□□ 0.71
CCDC88B-202ENST00000356786 C15orf52Q6ZUT6 534 aaKnown RBP19.51■□□□□ 0.71
CCDC88B-202ENST00000356786 PNPT1Q8TCS8 783 aaKnown RBP19.51■□□□□ 0.71
CCDC88B-202ENST00000356786 PIH1D2Q8WWB5 315 aa19.51■□□□□ 0.71
CCDC88B-202ENST00000356786 SIX2Q9NPC8 291 aa19.51■□□□□ 0.71
CCDC88B-202ENST00000356786 RAD18Q9NS91 495 aa19.51■□□□□ 0.71
CCDC88B-202ENST00000356786 FETUBQ9UGM5 382 aa19.51■□□□□ 0.71
CCDC88B-202ENST00000356786 XRN1Q8IZH2 1706 aaKnown RBP19.51■□□□□ 0.71
CCDC88B-202ENST00000356786 AIREO43918 545 aa19.51■□□□□ 0.71
CCDC88B-202ENST00000356786 LRG1P02750 347 aa19.51■□□□□ 0.71
CCDC88B-202ENST00000356786 ABL2P42684 1182 aa19.51■□□□□ 0.71
CCDC88B-202ENST00000356786 SPATA19Q7Z5L4 167 aa19.51■□□□□ 0.71
CCDC88B-202ENST00000356786 ZNF410Q86VK4 478 aa19.51■□□□□ 0.71
CCDC88B-202ENST00000356786 XYLT1Q86Y38 959 aa19.51■□□□□ 0.71
CCDC88B-202ENST00000356786 ZFAND2BQ8WV99 257 aa19.51■□□□□ 0.71
CCDC88B-202ENST00000356786 PCDHAC1Q9H158 963 aa19.51■□□□□ 0.71
CCDC88B-202ENST00000356786 MUC13Q9H3R2 512 aa19.51■□□□□ 0.71
CCDC88B-202ENST00000356786 BPIFA1Q9NP55 256 aa19.51■□□□□ 0.71
CCDC88B-202ENST00000356786 PDP1Q9P0J1 537 aaPredicted RBP19.51■□□□□ 0.71
CCDC88B-202ENST00000356786 TMEM59LQ9UK28 342 aa19.51■□□□□ 0.71
CCDC88B-202ENST00000356786 OAZ1P54368 228 aa19.51■□□□□ 0.71
CCDC88B-202ENST00000356786 TEX44Q53QW1 395 aa19.51■□□□□ 0.71
CCDC88B-202ENST00000356786 HSPBAP1Q96EW2 488 aa19.51■□□□□ 0.71
CCDC88B-202ENST00000356786 LINGO1Q96FE5 620 aa19.51■□□□□ 0.71
CCDC88B-202ENST00000356786 FEM1AQ9BSK4 669 aa19.51■□□□□ 0.71
CCDC88B-202ENST00000356786 UGT1A9O60656 530 aa19.51■□□□□ 0.71
CCDC88B-202ENST00000356786 TMEM63AO94886 807 aa19.51■□□□□ 0.71
CCDC88B-202ENST00000356786 UGT1A6P19224 532 aa19.51■□□□□ 0.71
CCDC88B-202ENST00000356786 UGT1A1P22309 533 aa19.51■□□□□ 0.71
CCDC88B-202ENST00000356786 UGT1A4P22310 534 aa19.51■□□□□ 0.71
CCDC88B-202ENST00000356786 HOXD10P28358 340 aa19.51■□□□□ 0.71
CCDC88B-202ENST00000356786 UGT1A3P35503 534 aa19.51■□□□□ 0.71
CCDC88B-202ENST00000356786 UGT1A5P35504 534 aa19.51■□□□□ 0.71
CCDC88B-202ENST00000356786 GDF10P55107 478 aa19.51■□□□□ 0.71
CCDC88B-202ENST00000356786 TGM3Q08188 693 aa19.51■□□□□ 0.71
CCDC88B-202ENST00000356786 PDCD4Q53EL6 469 aaKnown RBP19.51■□□□□ 0.71
CCDC88B-202ENST00000356786 PMF1Q6P1K2 205 aa19.51■□□□□ 0.71
CCDC88B-202ENST00000356786 TRIM48Q8IWZ4 208 aa19.51■□□□□ 0.71
CCDC88B-202ENST00000356786 TWIST2Q8WVJ9 160 aa19.51■□□□□ 0.71
CCDC88B-202ENST00000356786 TSSK3Q96PN8 268 aa19.51■□□□□ 0.71
CCDC88B-202ENST00000356786 SLC38A2Q96QD8 506 aa19.51■□□□□ 0.71
CCDC88B-202ENST00000356786 UGT1A7Q9HAW7 530 aa19.51■□□□□ 0.71
CCDC88B-202ENST00000356786 UGT1A10Q9HAW8 530 aa19.51■□□□□ 0.71
CCDC88B-202ENST00000356786 UGT1A8Q9HAW9 530 aa19.51■□□□□ 0.71
CCDC88B-202ENST00000356786 ANGPT4Q9Y264 503 aa19.51■□□□□ 0.71
CCDC88B-202ENST00000356786 CASKO14936 926 aa19.5■□□□□ 0.71
CCDC88B-202ENST00000356786 TBX1O43435 398 aa19.5■□□□□ 0.71
CCDC88B-202ENST00000356786 CHRNGP07510 517 aa19.5■□□□□ 0.71
CCDC88B-202ENST00000356786 EPORP19235 508 aa19.5■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms