RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 WNT1P04628 370 aa22.12■■□□□ 1.13
SHMT1-203ENST00000354098 RETP07949 1114 aa22.12■■□□□ 1.13
SHMT1-203ENST00000354098 IGFALSP35858 605 aa22.12■■□□□ 1.13
SHMT1-203ENST00000354098 HMGCLP35914 325 aa22.12■■□□□ 1.13
SHMT1-203ENST00000354098 MPLP40238 635 aa22.12■■□□□ 1.13
SHMT1-203ENST00000354098 RPL21P46778 160 aaKnown RBP22.12■■□□□ 1.13
SHMT1-203ENST00000354098 RACK1P63244 317 aaKnown RBP22.12■■□□□ 1.13
SHMT1-203ENST00000354098 STAT4Q14765 748 aa22.12■■□□□ 1.13
SHMT1-203ENST00000354098 TAF1AQ15573 450 aaPredicted RBP22.12■■□□□ 1.13
SHMT1-203ENST00000354098 GCNT7Q6ZNI0 430 aa22.12■■□□□ 1.13
SHMT1-203ENST00000354098 MMGT1Q8N4V1 131 aa22.12■■□□□ 1.13
SHMT1-203ENST00000354098 CEP112Q8N8E3 955 aa22.12■■□□□ 1.13
SHMT1-203ENST00000354098 ERP44Q9BS26 406 aa22.12■■□□□ 1.13
SHMT1-203ENST00000354098 C1QTNF7Q9BXJ2 289 aa22.12■■□□□ 1.13
SHMT1-203ENST00000354098 ABCG8Q9H221 673 aa22.12■■□□□ 1.13
SHMT1-203ENST00000354098 L2HGDHQ9H9P8 463 aa22.12■■□□□ 1.13
SHMT1-203ENST00000354098 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP22.12■■□□□ 1.13
SHMT1-203ENST00000354098 PCDHGA5Q9Y5G8 931 aa22.12■■□□□ 1.13
SHMT1-203ENST00000354098 K7ESM1 405 aa22.11■■□□□ 1.13
SHMT1-203ENST00000354098 PCCBP05166 539 aa22.11■■□□□ 1.13
SHMT1-203ENST00000354098 CSNK1EP49674 416 aaKnown RBP22.11■■□□□ 1.13
SHMT1-203ENST00000354098 SESN2P58004 480 aaPredicted RBP22.11■■□□□ 1.13
SHMT1-203ENST00000354098 CCDC38Q502W7 563 aa22.11■■□□□ 1.13
SHMT1-203ENST00000354098 LRRC8BQ6P9F7 803 aa22.11■■□□□ 1.13
SHMT1-203ENST00000354098 CAND1Q86VP6 1230 aaKnown RBP22.11■■□□□ 1.13
SHMT1-203ENST00000354098 GPR26Q8NDV2 337 aa22.11■■□□□ 1.13
SHMT1-203ENST00000354098 DPH5Q9H2P9 285 aa22.11■■□□□ 1.13
SHMT1-203ENST00000354098 PKD2L2Q9NZM6 624 aa22.11■■□□□ 1.13
SHMT1-203ENST00000354098 IL17CQ9P0M4 197 aa22.11■■□□□ 1.13
SHMT1-203ENST00000354098 A0A1B0GTW7 788 aa22.11■■□□□ 1.13
SHMT1-203ENST00000354098 A0A1W2PR77 199 aa22.11■■□□□ 1.13
SHMT1-203ENST00000354098 LDB2O43679 373 aa22.11■■□□□ 1.13
SHMT1-203ENST00000354098 GNSP15586 552 aa22.11■■□□□ 1.13
SHMT1-203ENST00000354098 BPIP17213 487 aa22.11■■□□□ 1.13
SHMT1-203ENST00000354098 SLC7A5Q01650 507 aa22.11■■□□□ 1.13
SHMT1-203ENST00000354098 C8orf74Q6P047 294 aa22.11■■□□□ 1.13
SHMT1-203ENST00000354098 LRRN4CLQ8ND94 238 aa22.11■■□□□ 1.13
SHMT1-203ENST00000354098 DENND6BQ8NEG7 585 aa22.11■■□□□ 1.13
SHMT1-203ENST00000354098 GMEB2Q9UKD1 530 aa22.11■■□□□ 1.13
SHMT1-203ENST00000354098 HS3ST3A1Q9Y663 406 aa22.11■■□□□ 1.13
SHMT1-203ENST00000354098 FPGTO14772 594 aa22.1■■□□□ 1.13
SHMT1-203ENST00000354098 TP73O15350 636 aa22.1■■□□□ 1.13
SHMT1-203ENST00000354098 SEC31AO94979 1220 aaKnown RBP22.1■■□□□ 1.13
SHMT1-203ENST00000354098 CRTAMO95727 393 aa22.1■■□□□ 1.13
SHMT1-203ENST00000354098 CD38P28907 300 aa22.1■■□□□ 1.13
SHMT1-203ENST00000354098 AFF3P51826 1226 aaKnown RBP22.1■■□□□ 1.13
SHMT1-203ENST00000354098 CRADDP78560 199 aa22.1■■□□□ 1.13
SHMT1-203ENST00000354098 SEPT6Q14141 434 aa22.1■■□□□ 1.13
SHMT1-203ENST00000354098 INPP5AQ14642 412 aa22.1■■□□□ 1.13
SHMT1-203ENST00000354098 PLA2G2CQ5R387 149 aa22.1■■□□□ 1.13
SHMT1-203ENST00000354098 PCGF5Q86SE9 256 aa22.1■■□□□ 1.13
SHMT1-203ENST00000354098 NRSN1Q8IZ57 195 aa22.1■■□□□ 1.13
SHMT1-203ENST00000354098 MCUQ8NE86 351 aa22.1■■□□□ 1.13
SHMT1-203ENST00000354098 AP2M1Q96CW1 435 aa22.1■■□□□ 1.13
SHMT1-203ENST00000354098 SNF8Q96H20 258 aa22.1■■□□□ 1.13
SHMT1-203ENST00000354098 AGAP2Q99490 1192 aa22.1■■□□□ 1.13
SHMT1-203ENST00000354098 RIOK2Q9BVS4 552 aaKnown RBP22.1■■□□□ 1.13
SHMT1-203ENST00000354098 FSCN3Q9NQT6 498 aa22.1■■□□□ 1.13
SHMT1-203ENST00000354098 SUSD2Q9UGT4 822 aa22.1■■□□□ 1.13
SHMT1-203ENST00000354098 CCDC78A2IDD5 438 aa22.09■■□□□ 1.13
SHMT1-203ENST00000354098 C2orf81A6NN90 581 aa22.09■■□□□ 1.13
SHMT1-203ENST00000354098 LPOP22079 712 aaPredicted RBP22.09■■□□□ 1.13
SHMT1-203ENST00000354098 HOXD12P35452 270 aa22.09■■□□□ 1.13
SHMT1-203ENST00000354098 ITGA8P53708 1063 aa22.09■■□□□ 1.13
SHMT1-203ENST00000354098 SARNPP82979 210 aaKnown RBP22.09■■□□□ 1.13
SHMT1-203ENST00000354098 TRADDQ15628 312 aa22.09■■□□□ 1.13
SHMT1-203ENST00000354098 ALS2CLQ60I27 953 aa22.09■■□□□ 1.13
SHMT1-203ENST00000354098 DUPD1Q68J44 220 aa22.09■■□□□ 1.13
SHMT1-203ENST00000354098 HIBCHQ6NVY1 386 aaPredicted RBP22.09■■□□□ 1.13
SHMT1-203ENST00000354098 ASCL5Q7RTU5 278 aa22.09■■□□□ 1.13
SHMT1-203ENST00000354098 ABI3BPQ7Z7G0 1075 aa22.09■■□□□ 1.13
SHMT1-203ENST00000354098 RAVER1Q8IY67 606 aaKnown RBP22.09■■□□□ 1.13
SHMT1-203ENST00000354098 DCLK2Q8N568 766 aa22.09■■□□□ 1.13
SHMT1-203ENST00000354098 OR13H1Q8NG92 308 aa22.09■■□□□ 1.13
SHMT1-203ENST00000354098 OR4K2Q8NGD2 314 aa22.09■■□□□ 1.13
SHMT1-203ENST00000354098 OR13C4Q8NGS5 318 aa22.09■■□□□ 1.13
SHMT1-203ENST00000354098 SERPINB12Q96P63 405 aa22.09■■□□□ 1.13
SHMT1-203ENST00000354098 FAM83DQ9H4H8 585 aa22.09■■□□□ 1.13
SHMT1-203ENST00000354098 NCDNQ9UBB6 729 aa22.09■■□□□ 1.13
SHMT1-203ENST00000354098 FNDC3AQ9Y2H6 1198 aaKnown RBP22.09■■□□□ 1.13
SHMT1-203ENST00000354098 MYLKQ15746 1914 aa22.09■■□□□ 1.13
SHMT1-203ENST00000354098 STX7O15400 261 aaKnown RBP22.08■■□□□ 1.13
SHMT1-203ENST00000354098 CFIP05156 583 aa22.08■■□□□ 1.13
SHMT1-203ENST00000354098 MGAT1P26572 445 aa22.08■■□□□ 1.13
SHMT1-203ENST00000354098 DPP6P42658 865 aa22.08■■□□□ 1.13
SHMT1-203ENST00000354098 DPTQ07507 201 aa22.08■■□□□ 1.13
SHMT1-203ENST00000354098 SPEM2Q0P670 501 aa22.08■■□□□ 1.13
SHMT1-203ENST00000354098 DUOXA1Q1HG43 343 aa22.08■■□□□ 1.13
SHMT1-203ENST00000354098 TRIM61Q5EBN2 209 aa22.08■■□□□ 1.13
SHMT1-203ENST00000354098 TCEAL6Q6IPX3 200 aa22.08■■□□□ 1.13
SHMT1-203ENST00000354098 ESRP1Q6NXG1 681 aaKnown RBP22.08■■□□□ 1.13
SHMT1-203ENST00000354098 PNCKQ6P2M8 343 aa22.08■■□□□ 1.13
SHMT1-203ENST00000354098 MFSD2AQ8NA29 543 aa22.08■■□□□ 1.13
SHMT1-203ENST00000354098 TCEAL3Q969E4 200 aa22.08■■□□□ 1.13
SHMT1-203ENST00000354098 UTP11Q9Y3A2 253 aaKnown RBP22.08■■□□□ 1.13
SHMT1-203ENST00000354098 PKP3Q9Y446 797 aa22.08■■□□□ 1.13
SHMT1-203ENST00000354098 OR1A2Q9Y585 309 aa22.08■■□□□ 1.13
SHMT1-203ENST00000354098 A0A1B0GVT2 93 aa22.07■■□□□ 1.12
SHMT1-203ENST00000354098 RGSL1A5PLK6 1076 aa22.07■■□□□ 1.12
SHMT1-203ENST00000354098 CCL22O00626 93 aa22.07■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms