RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 ATXN2Q99700 1313 aaKnown RBP9.21□□□□□ -0.94
USP4-202ENST00000351842 CKAP5Q14008 2032 aa9.21□□□□□ -0.94
USP4-202ENST00000351842 A0A1W2PQU0 124 aa9.2□□□□□ -0.94
USP4-202ENST00000351842 CCDC162PA2VCL2 907 aa9.2□□□□□ -0.94
USP4-202ENST00000351842 IQCF5A8MTL0 148 aa9.2□□□□□ -0.94
USP4-202ENST00000351842 AGRPO00253 132 aa9.2□□□□□ -0.94
USP4-202ENST00000351842 TRAFD1O14545 582 aaPredicted RBP9.2□□□□□ -0.94
USP4-202ENST00000351842 LATO43561 262 aa9.2□□□□□ -0.94
USP4-202ENST00000351842 PRAMEF1O95521 474 aa9.2□□□□□ -0.94
USP4-202ENST00000351842 HPDP32754 393 aaPredicted RBP9.2□□□□□ -0.94
USP4-202ENST00000351842 ADRA1AP35348 466 aa9.2□□□□□ -0.94
USP4-202ENST00000351842 DRD3P35462 400 aa9.2□□□□□ -0.94
USP4-202ENST00000351842 TNFRSF4P43489 277 aa9.2□□□□□ -0.94
USP4-202ENST00000351842 NEK3P51956 506 aa9.2□□□□□ -0.94
USP4-202ENST00000351842 RPS14P62263 151 aaKnown RBP9.2□□□□□ -0.94
USP4-202ENST00000351842 PPP2CBP62714 309 aa9.2□□□□□ -0.94
USP4-202ENST00000351842 POLR2LP62875 67 aaKnown RBP9.2□□□□□ -0.94
USP4-202ENST00000351842 PPP2CAP67775 309 aa9.2□□□□□ -0.94
USP4-202ENST00000351842 ZXDAP98168 799 aa9.2□□□□□ -0.94
USP4-202ENST00000351842 SF3A3Q12874 501 aaKnown RBP eCLIP9.2□□□□□ -0.946e-7■■■■■ 26.8
USP4-202ENST00000351842 PLA2G4EQ3MJ16 856 aa9.2□□□□□ -0.94
USP4-202ENST00000351842 ANKRD20A4Q4UJ75 823 aa9.2□□□□□ -0.94
USP4-202ENST00000351842 ZNF789Q5FWF6 425 aa9.2□□□□□ -0.94
USP4-202ENST00000351842 EGFL6Q8IUX8 553 aa9.2□□□□□ -0.94
USP4-202ENST00000351842 CXorf40AQ8TE69 158 aa9.2□□□□□ -0.94
USP4-202ENST00000351842 TOE1Q96GM8 510 aaKnown RBP9.2□□□□□ -0.94
USP4-202ENST00000351842 PPP1R16AQ96I34 528 aa9.2□□□□□ -0.94
USP4-202ENST00000351842 RIOK2Q9BVS4 552 aaKnown RBP9.2□□□□□ -0.94
USP4-202ENST00000351842 CEP44Q9C0F1 390 aa9.2□□□□□ -0.94
USP4-202ENST00000351842 IL22Q9GZX6 179 aa9.2□□□□□ -0.94
USP4-202ENST00000351842 ASB8Q9H765 288 aa9.2□□□□□ -0.94
USP4-202ENST00000351842 POLMQ9NP87 494 aaPredicted RBP9.2□□□□□ -0.94
USP4-202ENST00000351842 CASS4Q9NQ75 786 aa9.2□□□□□ -0.94
USP4-202ENST00000351842 CIDEBQ9UHD4 219 aa9.2□□□□□ -0.94
USP4-202ENST00000351842 MMP17Q9ULZ9 603 aa9.2□□□□□ -0.94
USP4-202ENST00000351842 RIPK2O43353 540 aa9.2□□□□□ -0.94
USP4-202ENST00000351842 OR1I1O60431 355 aa9.2□□□□□ -0.94
USP4-202ENST00000351842 GSRP00390 522 aa9.2□□□□□ -0.94
USP4-202ENST00000351842 GOT2P00505 430 aaKnown RBP9.2□□□□□ -0.94
USP4-202ENST00000351842 KRT15P19012 456 aa9.2□□□□□ -0.94
USP4-202ENST00000351842 TPMTP51580 245 aa9.2□□□□□ -0.94
USP4-202ENST00000351842 COPAP53621 1224 aa9.2□□□□□ -0.94
USP4-202ENST00000351842 ZNF460Q14592 562 aa9.2□□□□□ -0.94
USP4-202ENST00000351842 FAM46CQ5VWP2 391 aa9.2□□□□□ -0.94
USP4-202ENST00000351842 KIAA0907Q7Z7F0 614 aaPredicted RBP9.2□□□□□ -0.94
USP4-202ENST00000351842 KCNMB4Q86W47 210 aa9.2□□□□□ -0.94
USP4-202ENST00000351842 NDUFAF2Q8N183 169 aa9.2□□□□□ -0.94
USP4-202ENST00000351842 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.2□□□□□ -0.94
USP4-202ENST00000351842 TTC25Q96NG3 672 aa9.2□□□□□ -0.94
USP4-202ENST00000351842 CAB39LQ9H9S4 337 aa9.2□□□□□ -0.94
USP4-202ENST00000351842 SMYD2Q9NRG4 433 aa9.2□□□□□ -0.94
USP4-202ENST00000351842 CRLS1Q9UJA2 301 aa9.2□□□□□ -0.94
USP4-202ENST00000351842 DNAJC16Q9Y2G8 782 aa9.2□□□□□ -0.94
USP4-202ENST00000351842 TCAF1Q9Y4C2 921 aa9.2□□□□□ -0.94
USP4-202ENST00000351842 SLC30A1Q9Y6M5 507 aa9.2□□□□□ -0.94
USP4-202ENST00000351842 GVINP1Q7Z2Y8 2422 aa9.2□□□□□ -0.94
USP4-202ENST00000351842 LOC285095A0A1B0GVY8 99 aa9.2□□□□□ -0.94
USP4-202ENST00000351842 HEATR9A2RTY3 570 aa9.2□□□□□ -0.94
USP4-202ENST00000351842 ERICH4A6NGS2 130 aa9.2□□□□□ -0.94
USP4-202ENST00000351842 OR2AG2A6NM03 316 aa9.2□□□□□ -0.94
USP4-202ENST00000351842 RECQL5O94762 991 aaPredicted RBP9.2□□□□□ -0.94
USP4-202ENST00000351842 CRTAMO95727 393 aa9.2□□□□□ -0.94
USP4-202ENST00000351842 TTC4O95801 387 aa9.2□□□□□ -0.94
USP4-202ENST00000351842 C6P13671 934 aa9.2□□□□□ -0.94
USP4-202ENST00000351842 LPOP22079 712 aaPredicted RBP9.2□□□□□ -0.94
USP4-202ENST00000351842 CXCL12P48061 93 aa9.2□□□□□ -0.94
USP4-202ENST00000351842 EIF3BP55884 814 aaKnown RBP9.2□□□□□ -0.94
USP4-202ENST00000351842 SGCGQ13326 291 aa9.2□□□□□ -0.94
USP4-202ENST00000351842 PCID2Q5JVF3 399 aa9.2□□□□□ -0.94
USP4-202ENST00000351842 GPR26Q8NDV2 337 aa9.2□□□□□ -0.94
USP4-202ENST00000351842 AP2M1Q96CW1 435 aa9.2□□□□□ -0.94
USP4-202ENST00000351842 ZIM3Q96PE6 472 aa9.2□□□□□ -0.94
USP4-202ENST00000351842 TRIB3Q96RU7 358 aa9.2□□□□□ -0.94
USP4-202ENST00000351842 MED4Q9NPJ6 270 aa9.2□□□□□ -0.94
USP4-202ENST00000351842 ABCF3Q9NUQ8 709 aa9.2□□□□□ -0.94
USP4-202ENST00000351842 EBF1Q9UH73 591 aa9.2□□□□□ -0.94
USP4-202ENST00000351842 TEX264Q9Y6I9 313 aa9.2□□□□□ -0.94
USP4-202ENST00000351842 ASXL3Q9C0F0 2248 aa9.19□□□□□ -0.94
USP4-202ENST00000351842 ERI2A8K979 691 aaKnown RBP9.19□□□□□ -0.94
USP4-202ENST00000351842 LDB2O43679 373 aa9.19□□□□□ -0.94
USP4-202ENST00000351842 INHBAP08476 426 aa9.19□□□□□ -0.94
USP4-202ENST00000351842 CA5AP35218 305 aa9.19□□□□□ -0.94
USP4-202ENST00000351842 MAPK8P45983 427 aa9.19□□□□□ -0.94
USP4-202ENST00000351842 PPM1FP49593 454 aaPredicted RBP9.19□□□□□ -0.94
USP4-202ENST00000351842 GTF2A1P52655 376 aaPredicted RBP9.19□□□□□ -0.94
USP4-202ENST00000351842 DRG2P55039 364 aaKnown RBP9.19□□□□□ -0.94
USP4-202ENST00000351842 CAV1Q03135 178 aa9.19□□□□□ -0.94
USP4-202ENST00000351842 CSTF1Q05048 431 aaKnown RBP9.19□□□□□ -0.94
USP4-202ENST00000351842 CHRNA6Q15825 494 aa9.19□□□□□ -0.94
USP4-202ENST00000351842 FBXO43Q4G163 708 aa9.19□□□□□ -0.94
USP4-202ENST00000351842 PSAPL1Q6NUJ1 521 aa9.19□□□□□ -0.94
USP4-202ENST00000351842 EMBQ6PCB8 327 aa9.19□□□□□ -0.94
USP4-202ENST00000351842 PIANPQ8IYJ0 282 aa9.19□□□□□ -0.94
USP4-202ENST00000351842 BEND7Q8N7W2 519 aaPredicted RBP9.19□□□□□ -0.94
USP4-202ENST00000351842 ISG20Q96AZ6 181 aaKnown RBP9.19□□□□□ -0.94
USP4-202ENST00000351842 LENG8Q96PV6 779 aaPredicted RBP9.19□□□□□ -0.94
USP4-202ENST00000351842 BOCQ9BWV1 1114 aa9.19□□□□□ -0.94
USP4-202ENST00000351842 C6orf106Q9H6K1 298 aaPredicted RBP9.19□□□□□ -0.94
USP4-202ENST00000351842 ADAM21Q9UKJ8 722 aa9.19□□□□□ -0.94
USP4-202ENST00000351842 RUVBL2Q9Y230 463 aaKnown RBP9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms