RNA–Protein interactions for RNA: ENST00000343508.7

CSMD3-203, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 13,018 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-203ENST00000343508 ERCC2P18074 760 aa4.79□□□□□ -1.64
CSMD3-203ENST00000343508 PAX3P23760 479 aa4.79□□□□□ -1.64
CSMD3-203ENST00000343508 IGFBP5P24593 272 aa4.79□□□□□ -1.64
CSMD3-203ENST00000343508 TIE1P35590 1138 aa4.79□□□□□ -1.64
CSMD3-203ENST00000343508 LIPEQ05469 1076 aa4.79□□□□□ -1.64
CSMD3-203ENST00000343508 GRM3Q14832 879 aa4.79□□□□□ -1.64
CSMD3-203ENST00000343508 GPR180Q86V85 440 aa4.79□□□□□ -1.64
CSMD3-203ENST00000343508 KLHL32Q96NJ5 620 aa4.79□□□□□ -1.64
CSMD3-203ENST00000343508 MFHAS1Q9Y4C4 1052 aa4.79□□□□□ -1.64
CSMD3-203ENST00000343508 UBXN8O00124 270 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 BCKDKO14874 412 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 HAT1O14929 419 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 FADS2O95864 444 aaKnown RBP4.78□□□□□ -1.64
CSMD3-203ENST00000343508 POU1F1P28069 291 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 IDH2P48735 452 aaKnown RBP4.78□□□□□ -1.64
CSMD3-203ENST00000343508 RALGDSQ12967 914 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 SKIV2LQ15477 1246 aaKnown RBP4.78□□□□□ -1.64
CSMD3-203ENST00000343508 SMIM5Q71RC9 77 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 PCDHAC1Q9H158 963 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 SERHL2Q9H4I8 314 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 ACTR8Q9H981 624 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 SERHLQ9NQF3 203 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 FBXO5Q9UKT4 447 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 LINC00854A0A1B0GVQ3 168 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 SPATA31C2B4DYI2 1134 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 SNNO75324 88 aaPredicted RBP4.78□□□□□ -1.64
CSMD3-203ENST00000343508 TAL1P17542 331 aaPredicted RBP4.78□□□□□ -1.64
CSMD3-203ENST00000343508 CACNB2Q08289 660 aaPredicted RBP4.78□□□□□ -1.64
CSMD3-203ENST00000343508 PLPPR4Q7Z2D5 763 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 OFCC1Q8IZS5 231 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 ADAM32Q8TC27 787 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 EDEM1Q92611 657 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 OR52E6Q96RD3 313 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 DUSP16Q9BY84 665 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 CHRAC1Q9NRG0 131 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 RBMX2Q9Y388 322 aaKnown RBP4.78□□□□□ -1.64
CSMD3-203ENST00000343508 CXorf49A8MYA2 514 aaPredicted RBP4.78□□□□□ -1.64
CSMD3-203ENST00000343508 F8W810 466 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 ABCB7O75027 752 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 CCNCP24863 283 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 TUBP50607 506 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 TRIM71Q2Q1W2 868 aaKnown RBP4.78□□□□□ -1.64
CSMD3-203ENST00000343508 DAW1Q8N136 415 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 EMILIN2Q9BXX0 1053 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 NMRK2Q9NPI5 230 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 DNAJB9Q9UBS3 223 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 ZDHHC2Q9UIJ5 367 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 TRPM3Q9HCF6 1732 aaPredicted RBP4.78□□□□□ -1.64
CSMD3-203ENST00000343508 BMP10O95393 424 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 PPP2R1BP30154 601 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 MYBPC3Q14896 1274 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 PPM1LQ5SGD2 360 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 CERCAMQ5T4B2 595 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 C6orf183Q5T699 404 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 FAM91A1Q658Y4 838 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 TUBA3EQ6PEY2 450 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 TRMT10BQ6PF06 316 aaKnown RBP4.78□□□□□ -1.64
CSMD3-203ENST00000343508 HDDC2Q7Z4H3 204 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 ZNF567Q8N184 647 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 LRRC15Q8TF66 581 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 GJD4Q96KN9 370 aaPredicted RBP4.78□□□□□ -1.64
CSMD3-203ENST00000343508 WRAP73Q9P2S5 460 aaPredicted RBP4.78□□□□□ -1.64
CSMD3-203ENST00000343508 LSM7Q9UK45 103 aaKnown RBP4.78□□□□□ -1.64
CSMD3-203ENST00000343508 PEX16Q9Y5Y5 336 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 U3KQV3 271 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 GPR182O15218 404 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 PAICSP22234 425 aaKnown RBP4.78□□□□□ -1.64
CSMD3-203ENST00000343508 IVDP26440 423 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 SCN1BQ07699 218 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 CRY2Q49AN0 593 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 VPS26BQ4G0F5 336 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 CLEC6AQ6EIG7 209 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 ZFPM1Q8IX07 1006 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 GOLM1Q8NBJ4 401 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 REPS1Q96D71 796 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 PCDH12Q9NPG4 1184 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 MAFBQ9Y5Q3 323 aaPredicted RBP4.78□□□□□ -1.64
CSMD3-203ENST00000343508 GNG14A0A1W2PPG7 69 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 PRMT5O14744 637 aaPredicted RBP4.78□□□□□ -1.64
CSMD3-203ENST00000343508 NDUFS2O75306 463 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 T-ENOLP0DO92 83 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 PROZP22891 400 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 HERVK_113P63132 956 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 CYP4F2P78329 520 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 CYP4F3Q08477 520 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 PABPC1LQ4VXU2 614 aaKnown RBP4.78□□□□□ -1.64
CSMD3-203ENST00000343508 SDE2Q6IQ49 451 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 OR4L1Q8NH43 312 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 TMEM174Q8WUU8 243 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 PRICKLE1Q96MT3 831 aaPredicted RBP4.78□□□□□ -1.64
CSMD3-203ENST00000343508 CITED4Q96RK1 184 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 ERVK-6Q9BXR3 956 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 FAIMQ9NVQ4 179 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 SPATA2Q9UM82 520 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 EI24O14681 340 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 ULK1O75385 1050 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 WBP4O75554 376 aaKnown RBP4.78□□□□□ -1.64
CSMD3-203ENST00000343508 USP17L7P0C7H9 530 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 INSRRP14616 1297 aa4.78□□□□□ -1.64
CSMD3-203ENST00000343508 TSPAN8P19075 237 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms