RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 FASTKQ14296 549 aaKnown RBP10.34□□□□□ -0.75
LIMA1-201ENST00000341247 KIF19Q2TAC6 998 aa10.34□□□□□ -0.75
LIMA1-201ENST00000341247 RNF219Q5W0B1 726 aaPredicted RBP10.34□□□□□ -0.75
LIMA1-201ENST00000341247 NPAS4Q8IUM7 802 aa10.34□□□□□ -0.75
LIMA1-201ENST00000341247 CARNMT1Q8N4J0 409 aa10.34□□□□□ -0.75
LIMA1-201ENST00000341247 MDGA1Q8NFP4 955 aa10.34□□□□□ -0.75
LIMA1-201ENST00000341247 GCNAQ96QF7 691 aa10.34□□□□□ -0.75
LIMA1-201ENST00000341247 GSTO2Q9H4Y5 243 aa10.34□□□□□ -0.75
LIMA1-201ENST00000341247 SEMA4BQ9NPR2 832 aaPredicted RBP10.34□□□□□ -0.75
LIMA1-201ENST00000341247 SCUBE2Q9NQ36 999 aa10.34□□□□□ -0.75
LIMA1-201ENST00000341247 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP10.34□□□□□ -0.75
LIMA1-201ENST00000341247 CAPN8A6NHC0 703 aa10.34□□□□□ -0.75
LIMA1-201ENST00000341247 FGF1P05230 155 aa10.34□□□□□ -0.75
LIMA1-201ENST00000341247 HLA-DPA1P20036 260 aa10.34□□□□□ -0.75
LIMA1-201ENST00000341247 YBEYP58557 167 aaPredicted RBP10.34□□□□□ -0.75
LIMA1-201ENST00000341247 ZNF177Q13360 481 aaPredicted RBP10.34□□□□□ -0.75
LIMA1-201ENST00000341247 UNC50Q53HI1 259 aa10.34□□□□□ -0.75
LIMA1-201ENST00000341247 HECTD3Q5T447 861 aa10.34□□□□□ -0.75
LIMA1-201ENST00000341247 PHC3Q8NDX5 983 aa10.34□□□□□ -0.75
LIMA1-201ENST00000341247 BRSK1Q8TDC3 778 aa10.34□□□□□ -0.75
LIMA1-201ENST00000341247 TRIM8Q9BZR9 551 aa10.34□□□□□ -0.75
LIMA1-201ENST00000341247 CCDC68Q9H2F9 335 aa10.34□□□□□ -0.75
LIMA1-201ENST00000341247 EML4Q9HC35 981 aaKnown RBP10.34□□□□□ -0.75
LIMA1-201ENST00000341247 PLK2Q9NYY3 685 aa10.34□□□□□ -0.75
LIMA1-201ENST00000341247 IKZF3Q9UKT9 509 aa10.34□□□□□ -0.75
LIMA1-201ENST00000341247 FNDC1Q4ZHG4 1894 aaPredicted RBP10.34□□□□□ -0.75
LIMA1-201ENST00000341247 IQCF5A8MTL0 148 aa10.33□□□□□ -0.76
LIMA1-201ENST00000341247 DNAJA2O60884 412 aa10.33□□□□□ -0.76
LIMA1-201ENST00000341247 NDST3O95803 873 aa10.33□□□□□ -0.76
LIMA1-201ENST00000341247 CD1DP15813 335 aa10.33□□□□□ -0.76
LIMA1-201ENST00000341247 CTPS1P17812 591 aa10.33□□□□□ -0.76
LIMA1-201ENST00000341247 PRDX6P30041 224 aa10.33□□□□□ -0.76
LIMA1-201ENST00000341247 POLD2P49005 469 aa10.33□□□□□ -0.76
LIMA1-201ENST00000341247 MAPKAPK2P49137 400 aa10.33□□□□□ -0.76
LIMA1-201ENST00000341247 SH3BP2P78314 561 aa10.33□□□□□ -0.76
LIMA1-201ENST00000341247 MRPS35P82673 323 aaKnown RBP10.33□□□□□ -0.76
LIMA1-201ENST00000341247 TIAL1Q01085 375 aaKnown RBP eCLIP10.33□□□□□ -0.76
LIMA1-201ENST00000341247 SEMG2Q02383 582 aa10.33□□□□□ -0.76
LIMA1-201ENST00000341247 PTK2BQ14289 1009 aa10.33□□□□□ -0.76
LIMA1-201ENST00000341247 ZRANB3Q5FWF4 1079 aa10.33□□□□□ -0.76
LIMA1-201ENST00000341247 FAM45BPQ6NSW5 357 aa10.33□□□□□ -0.76
LIMA1-201ENST00000341247 IRGCQ6NXR0 463 aa10.33□□□□□ -0.76
LIMA1-201ENST00000341247 CYP2R1Q6VVX0 501 aa10.33□□□□□ -0.76
LIMA1-201ENST00000341247 CRIPAKQ8N1N5 446 aa10.33□□□□□ -0.76
LIMA1-201ENST00000341247 BBS5Q8N3I7 341 aa10.33□□□□□ -0.76
LIMA1-201ENST00000341247 FAM45AQ8TCE6 357 aa10.33□□□□□ -0.76
LIMA1-201ENST00000341247 FEM1CQ96JP0 617 aa10.33□□□□□ -0.76
LIMA1-201ENST00000341247 RANBP9Q96S59 729 aa10.33□□□□□ -0.76
LIMA1-201ENST00000341247 SERPINI1Q99574 410 aa10.33□□□□□ -0.76
LIMA1-201ENST00000341247 TM6SF2Q9BZW4 377 aa10.33□□□□□ -0.76
LIMA1-201ENST00000341247 GPBP1L1Q9HC44 474 aaPredicted RBP10.33□□□□□ -0.76
LIMA1-201ENST00000341247 SEPT3Q9UH03 358 aa10.33□□□□□ -0.76
LIMA1-201ENST00000341247 SCOCQ9UIL1 159 aa10.33□□□□□ -0.76
LIMA1-201ENST00000341247 FKBPLQ9UIM3 349 aa10.33□□□□□ -0.76
LIMA1-201ENST00000341247 TIMM22Q9Y584 194 aa10.33□□□□□ -0.76
LIMA1-201ENST00000341247 ZNF840PA6NDX5 716 aa10.33□□□□□ -0.76
LIMA1-201ENST00000341247 H3BNX3 289 aa10.33□□□□□ -0.76
LIMA1-201ENST00000341247 H7C4K7 107 aa10.33□□□□□ -0.76
LIMA1-201ENST00000341247 PSMD12O00232 456 aaPredicted RBP10.33□□□□□ -0.76
LIMA1-201ENST00000341247 SMIM24O75264 130 aa10.33□□□□□ -0.76
LIMA1-201ENST00000341247 NDUFS3O75489 264 aa10.33□□□□□ -0.76
LIMA1-201ENST00000341247 PAPSS2O95340 614 aaPredicted RBP10.33□□□□□ -0.76
LIMA1-201ENST00000341247 BFSP2Q13515 415 aa10.33□□□□□ -0.76
LIMA1-201ENST00000341247 TSNQ15631 228 aaKnown RBP10.33□□□□□ -0.76
LIMA1-201ENST00000341247 PTPRNQ16849 979 aa10.33□□□□□ -0.76
LIMA1-201ENST00000341247 ZNF678Q5SXM1 525 aa10.33□□□□□ -0.76
LIMA1-201ENST00000341247 ATXN7L2Q5T6C5 722 aaPredicted RBP10.33□□□□□ -0.76
LIMA1-201ENST00000341247 LCA5Q86VQ0 697 aa10.33□□□□□ -0.76
LIMA1-201ENST00000341247 GALNT4Q8N4A0 578 aa10.33□□□□□ -0.76
LIMA1-201ENST00000341247 HMGCLL1Q8TB92 370 aa10.33□□□□□ -0.76
LIMA1-201ENST00000341247 GPR21Q99679 349 aa10.33□□□□□ -0.76
LIMA1-201ENST00000341247 SLC30A3Q99726 388 aa10.33□□□□□ -0.76
LIMA1-201ENST00000341247 CCDC28BQ9BUN5 200 aa10.33□□□□□ -0.76
LIMA1-201ENST00000341247 MRPL1Q9BYD6 325 aaKnown RBP10.33□□□□□ -0.76
LIMA1-201ENST00000341247 PDFQ9HBH1 243 aa10.33□□□□□ -0.76
LIMA1-201ENST00000341247 FNIP2Q9P278 1114 aa10.33□□□□□ -0.76
LIMA1-201ENST00000341247 STK39Q9UEW8 545 aa10.33□□□□□ -0.76
LIMA1-201ENST00000341247 AGO1Q9UL18 857 aaKnown RBP10.33□□□□□ -0.76
LIMA1-201ENST00000341247 E7ENX8 843 aa10.33□□□□□ -0.76
LIMA1-201ENST00000341247 CDC7O00311 574 aa10.33□□□□□ -0.76
LIMA1-201ENST00000341247 BNIP3LO60238 219 aa10.33□□□□□ -0.76
LIMA1-201ENST00000341247 RNASEH1O60930 286 aaKnown RBP10.33□□□□□ -0.76
LIMA1-201ENST00000341247 NIPSNAP2O75323 286 aa10.33□□□□□ -0.76
LIMA1-201ENST00000341247 STC2O76061 302 aa10.33□□□□□ -0.76
LIMA1-201ENST00000341247 LINC00032P0C843 101 aa10.33□□□□□ -0.76
LIMA1-201ENST00000341247 ZNF37AP17032 561 aaPredicted RBP10.33□□□□□ -0.76
LIMA1-201ENST00000341247 MZF1P28698 734 aaPredicted RBP10.33□□□□□ -0.76
LIMA1-201ENST00000341247 DNAJB13P59910 316 aa10.33□□□□□ -0.76
LIMA1-201ENST00000341247 ZNF423Q2M1K9 1284 aa10.33□□□□□ -0.76
LIMA1-201ENST00000341247 PSAPL1Q6NUJ1 521 aa10.33□□□□□ -0.76
LIMA1-201ENST00000341247 AAGABQ6PD74 315 aa10.33□□□□□ -0.76
LIMA1-201ENST00000341247 TAS2R42Q7RTR8 314 aa10.33□□□□□ -0.76
LIMA1-201ENST00000341247 PIANPQ8IYJ0 282 aa10.33□□□□□ -0.76
LIMA1-201ENST00000341247 VWCEQ96DN2 955 aa10.33□□□□□ -0.76
LIMA1-201ENST00000341247 TUBGCP5Q96RT8 1024 aa10.33□□□□□ -0.76
LIMA1-201ENST00000341247 SLC22A12Q96S37 553 aa10.33□□□□□ -0.76
LIMA1-201ENST00000341247 CORO1CQ9ULV4 474 aaPredicted RBP10.33□□□□□ -0.76
LIMA1-201ENST00000341247 FCF1Q9Y324 198 aaKnown RBP10.33□□□□□ -0.76
LIMA1-201ENST00000341247 NPEPPSL1A6NEC2 478 aa10.32□□□□□ -0.76
LIMA1-201ENST00000341247 INSIG1O15503 277 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms