RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 CSHL1Q14406 222 aa13.38□□□□□ -0.27
HMGB1-202ENST00000339872 TSNAXIP1Q2TAA8 658 aa13.38□□□□□ -0.27
HMGB1-202ENST00000339872 PSAPL1Q6NUJ1 521 aa13.38□□□□□ -0.27
HMGB1-202ENST00000339872 ZNF549Q6P9A3 640 aa13.38□□□□□ -0.27
HMGB1-202ENST00000339872 KIAA0907Q7Z7F0 614 aaPredicted RBP13.38□□□□□ -0.27
HMGB1-202ENST00000339872 PIM3Q86V86 326 aa13.38□□□□□ -0.27
HMGB1-202ENST00000339872 EID2BQ96D98 161 aa13.38□□□□□ -0.27
HMGB1-202ENST00000339872 TUBGCP5Q96RT8 1024 aa13.38□□□□□ -0.27
HMGB1-202ENST00000339872 CIPCQ9C0C6 399 aa13.38□□□□□ -0.27
HMGB1-202ENST00000339872 FAM96AQ9H5X1 160 aa13.38□□□□□ -0.27
HMGB1-202ENST00000339872 ZFYVE1Q9HBF4 777 aa13.38□□□□□ -0.27
HMGB1-202ENST00000339872 IL17CQ9P0M4 197 aa13.38□□□□□ -0.27
HMGB1-202ENST00000339872 CORO1CQ9ULV4 474 aaPredicted RBP13.38□□□□□ -0.27
HMGB1-202ENST00000339872 ZNF106Q9H2Y7 1883 aaKnown RBP13.37□□□□□ -0.27
HMGB1-202ENST00000339872 A0A0G2JND7 137 aa13.37□□□□□ -0.27
HMGB1-202ENST00000339872 CAPN8A6NHC0 703 aa13.37□□□□□ -0.27
HMGB1-202ENST00000339872 LINC01565O15544 149 aa13.37□□□□□ -0.27
HMGB1-202ENST00000339872 NDUFS3O75489 264 aa13.37□□□□□ -0.27
HMGB1-202ENST00000339872 LYPLA1O75608 230 aaPredicted RBP13.37□□□□□ -0.27
HMGB1-202ENST00000339872 TGDSO95455 350 aa13.37□□□□□ -0.27
HMGB1-202ENST00000339872 ARSAP15289 507 aa13.37□□□□□ -0.27
HMGB1-202ENST00000339872 HNF1BP35680 557 aa13.37□□□□□ -0.27
HMGB1-202ENST00000339872 SLC1A6P48664 564 aa13.37□□□□□ -0.27
HMGB1-202ENST00000339872 RAD51Q06609 339 aa13.37□□□□□ -0.27
HMGB1-202ENST00000339872 ILF2Q12905 390 aaKnown RBP13.37□□□□□ -0.27
HMGB1-202ENST00000339872 GPR149Q86SP6 731 aa13.37□□□□□ -0.27
HMGB1-202ENST00000339872 C12orf40Q86WS4 652 aa13.37□□□□□ -0.27
HMGB1-202ENST00000339872 CRLF3Q8IUI8 442 aa13.37□□□□□ -0.27
HMGB1-202ENST00000339872 RDH11Q8TC12 318 aa13.37□□□□□ -0.27
HMGB1-202ENST00000339872 HEXDCQ8WVB3 486 aa13.37□□□□□ -0.27
HMGB1-202ENST00000339872 SREK1Q8WXA9 508 aaKnown RBP13.37□□□□□ -0.27
HMGB1-202ENST00000339872 SCG3Q8WXD2 468 aaKnown RBP13.37□□□□□ -0.27
HMGB1-202ENST00000339872 VOPP1Q96AW1 172 aa13.37□□□□□ -0.27
HMGB1-202ENST00000339872 GPR78Q96P69 363 aa13.37□□□□□ -0.27
HMGB1-202ENST00000339872 KDM4CQ9H3R0 1056 aa13.37□□□□□ -0.27
HMGB1-202ENST00000339872 EBF3Q9H4W6 596 aa13.37□□□□□ -0.27
HMGB1-202ENST00000339872 THAP1Q9NVV9 213 aa13.37□□□□□ -0.27
HMGB1-202ENST00000339872 A8MX80 341 aa13.36□□□□□ -0.27
HMGB1-202ENST00000339872 H7C0S8 307 aa13.36□□□□□ -0.27
HMGB1-202ENST00000339872 HOXC11O43248 304 aaPredicted RBP13.36□□□□□ -0.27
HMGB1-202ENST00000339872 ITM2AO43736 263 aa13.36□□□□□ -0.27
HMGB1-202ENST00000339872 POP4O95707 220 aaKnown RBP13.36□□□□□ -0.27
HMGB1-202ENST00000339872 UGT2B4P06133 528 aa13.36□□□□□ -0.27
HMGB1-202ENST00000339872 SBK3P0C264 359 aa13.36□□□□□ -0.27
HMGB1-202ENST00000339872 CCDC166P0CW27 439 aa13.36□□□□□ -0.27
HMGB1-202ENST00000339872 KITP10721 976 aa13.36□□□□□ -0.27
HMGB1-202ENST00000339872 FDXRP22570 491 aa13.36□□□□□ -0.27
HMGB1-202ENST00000339872 GRK2P25098 689 aa13.36□□□□□ -0.27
HMGB1-202ENST00000339872 RECQLP46063 649 aaPredicted RBP13.36□□□□□ -0.27
HMGB1-202ENST00000339872 KPNA2P52292 529 aaKnown RBP13.36□□□□□ -0.27
HMGB1-202ENST00000339872 FAM83EQ2M2I3 478 aa13.36□□□□□ -0.27
HMGB1-202ENST00000339872 SPRED3Q2MJR0 410 aa13.36□□□□□ -0.27
HMGB1-202ENST00000339872 ZYG11AQ6WRX3 759 aa13.36□□□□□ -0.27
HMGB1-202ENST00000339872 PIANPQ8IYJ0 282 aa13.36□□□□□ -0.27
HMGB1-202ENST00000339872 TMEM151AQ8N4L1 468 aa13.36□□□□□ -0.27
HMGB1-202ENST00000339872 CHST14Q8NCH0 376 aa13.36□□□□□ -0.27
HMGB1-202ENST00000339872 GRIN3AQ8TCU5 1115 aa13.36□□□□□ -0.27
HMGB1-202ENST00000339872 ZNF398Q8TD17 642 aa13.36□□□□□ -0.27
HMGB1-202ENST00000339872 LPGAT1Q92604 370 aa13.36□□□□□ -0.27
HMGB1-202ENST00000339872 SUV39H2Q9H5I1 410 aa13.36□□□□□ -0.27
HMGB1-202ENST00000339872 IGSF5Q9NSI5 407 aa13.36□□□□□ -0.27
HMGB1-202ENST00000339872 MARCOQ9UEW3 520 aaPredicted RBP13.36□□□□□ -0.27
HMGB1-202ENST00000339872 FBXO10Q9UK96 956 aa13.36□□□□□ -0.27
HMGB1-202ENST00000339872 MTF2Q9Y483 593 aaPredicted RBP13.36□□□□□ -0.27
HMGB1-202ENST00000339872 MYO9BQ13459 2157 aa13.36□□□□□ -0.27
HMGB1-202ENST00000339872 HEPACAM2A8MVW5 462 aa13.36□□□□□ -0.27
HMGB1-202ENST00000339872 GPR39O43194 453 aa13.36□□□□□ -0.27
HMGB1-202ENST00000339872 CLDN7O95471 211 aa13.36□□□□□ -0.27
HMGB1-202ENST00000339872 NFATC1O95644 943 aa13.36□□□□□ -0.27
HMGB1-202ENST00000339872 HOXB8P17481 243 aaPredicted RBP13.36□□□□□ -0.27
HMGB1-202ENST00000339872 FMO4P31512 558 aa13.36□□□□□ -0.27
HMGB1-202ENST00000339872 NNMTP40261 264 aa13.36□□□□□ -0.27
HMGB1-202ENST00000339872 HYAL1Q12794 435 aa13.36□□□□□ -0.27
HMGB1-202ENST00000339872 AGAP9Q5VTM2 703 aa13.36□□□□□ -0.27
HMGB1-202ENST00000339872 CCDC91Q7Z6B0 441 aa13.36□□□□□ -0.27
HMGB1-202ENST00000339872 FITM2Q8N6M3 262 aa13.36□□□□□ -0.27
HMGB1-202ENST00000339872 KIAA1958Q8N8K9 716 aa13.36□□□□□ -0.27
HMGB1-202ENST00000339872 FAM136AQ96C01 138 aa13.36□□□□□ -0.27
HMGB1-202ENST00000339872 MRGPRX3Q96LB0 322 aa13.36□□□□□ -0.27
HMGB1-202ENST00000339872 TCF12Q99081 682 aa13.36□□□□□ -0.27
HMGB1-202ENST00000339872 AARSD1Q9BTE6 412 aaKnown RBP13.36□□□□□ -0.27
HMGB1-202ENST00000339872 CPEB1Q9BZB8 566 aaKnown RBP13.36□□□□□ -0.27
HMGB1-202ENST00000339872 CCDC68Q9H2F9 335 aa13.36□□□□□ -0.27
HMGB1-202ENST00000339872 GDE1Q9NZC3 331 aa13.36□□□□□ -0.27
HMGB1-202ENST00000339872 C5orf42Q9H799 3197 aa13.35□□□□□ -0.27
HMGB1-202ENST00000339872 NPIPB15A6NHN6 443 aaPredicted RBP13.35□□□□□ -0.27
HMGB1-202ENST00000339872 TTC34A8MYJ7 566 aa13.35□□□□□ -0.27
HMGB1-202ENST00000339872 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13.35□□□□□ -0.27
HMGB1-202ENST00000339872 TRIM13O60858 407 aa13.35□□□□□ -0.27
HMGB1-202ENST00000339872 TULP3O75386 442 aa13.35□□□□□ -0.27
HMGB1-202ENST00000339872 SRP72O76094 671 aaKnown RBP13.35□□□□□ -0.27
HMGB1-202ENST00000339872 DLDP09622 509 aaKnown RBP13.35□□□□□ -0.27
HMGB1-202ENST00000339872 LTA4HP09960 611 aaKnown RBP13.35□□□□□ -0.27
HMGB1-202ENST00000339872 TTPAP49638 278 aa13.35□□□□□ -0.27
HMGB1-202ENST00000339872 ARFIP2P53365 341 aa13.35□□□□□ -0.27
HMGB1-202ENST00000339872 XIAPP98170 497 aa13.35□□□□□ -0.27
HMGB1-202ENST00000339872 SEMG2Q02383 582 aa13.35□□□□□ -0.27
HMGB1-202ENST00000339872 TAS2R42Q7RTR8 314 aa13.35□□□□□ -0.27
HMGB1-202ENST00000339872 TSPAN33Q86UF1 283 aa13.35□□□□□ -0.27
HMGB1-202ENST00000339872 OR2A12Q8NGT7 310 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 142.6 ms