RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 PCDH18Q9HCL0 1135 aa12.84□□□□□ -0.35
USP47-202ENST00000339865 ANXA2P2A6NMY6 339 aa12.83□□□□□ -0.35
USP47-202ENST00000339865 QSOX1O00391 747 aa12.83□□□□□ -0.35
USP47-202ENST00000339865 ANXA2P07355 339 aaKnown RBP12.83□□□□□ -0.35
USP47-202ENST00000339865 SEMA3AQ14563 771 aa12.83□□□□□ -0.35
USP47-202ENST00000339865 FNDC3BQ53EP0 1204 aaKnown RBP12.83□□□□□ -0.35
USP47-202ENST00000339865 XKR6Q5GH73 641 aa12.83□□□□□ -0.35
USP47-202ENST00000339865 TTI2Q6NXR4 508 aa12.83□□□□□ -0.35
USP47-202ENST00000339865 ALYREFQ86V81 257 aaKnown RBP12.83□□□□□ -0.35
USP47-202ENST00000339865 GALNT15Q8N3T1 639 aa12.83□□□□□ -0.35
USP47-202ENST00000339865 STAG3L4Q8TBR4 150 aa12.83□□□□□ -0.35
USP47-202ENST00000339865 HTR3CQ8WXA8 447 aa12.83□□□□□ -0.35
USP47-202ENST00000339865 FADS3Q9Y5Q0 445 aa12.83□□□□□ -0.35
USP47-202ENST00000339865 TRDMT1O14717 391 aaKnown RBP12.83□□□□□ -0.36
USP47-202ENST00000339865 ERAL1O75616 437 aaKnown RBP12.83□□□□□ -0.36
USP47-202ENST00000339865 CDH5P33151 784 aaPredicted RBP12.83□□□□□ -0.36
USP47-202ENST00000339865 TUBP50607 506 aa12.83□□□□□ -0.36
USP47-202ENST00000339865 SYCE2Q6PIF2 218 aa12.83□□□□□ -0.36
USP47-202ENST00000339865 SEC14L3Q9UDX4 400 aa12.83□□□□□ -0.36
USP47-202ENST00000339865 ZNHIT2Q9UHR6 403 aa12.83□□□□□ -0.36
USP47-202ENST00000339865 AIREO43918 545 aa12.83□□□□□ -0.36
USP47-202ENST00000339865 HGFP14210 728 aa12.83□□□□□ -0.36
USP47-202ENST00000339865 AIMP2Q13155 320 aaKnown RBP12.83□□□□□ -0.36
USP47-202ENST00000339865 ZNF697Q5TEC3 545 aa12.83□□□□□ -0.36
USP47-202ENST00000339865 TNS4Q8IZW8 715 aa12.83□□□□□ -0.36
USP47-202ENST00000339865 RBM4BQ9BQ04 359 aaKnown RBP12.83□□□□□ -0.36
USP47-202ENST00000339865 KXD1Q9BQD3 176 aa12.83□□□□□ -0.36
USP47-202ENST00000339865 RBM4Q9BWF3 364 aaKnown RBP12.83□□□□□ -0.36
USP47-202ENST00000339865 SMURF1Q9HCE7 757 aa12.83□□□□□ -0.36
USP47-202ENST00000339865 KCNN3Q9UGI6 736 aa12.83□□□□□ -0.36
USP47-202ENST00000339865 CNTNAP2Q9UHC6 1331 aa12.83□□□□□ -0.36
USP47-202ENST00000339865 BAP1Q92560 729 aa12.83□□□□□ -0.36
USP47-202ENST00000339865 LIN37Q96GY3 246 aaPredicted RBP12.83□□□□□ -0.36
USP47-202ENST00000339865 COMMD4Q9H0A8 199 aa12.83□□□□□ -0.36
USP47-202ENST00000339865 ANKZF1Q9H8Y5 726 aa12.83□□□□□ -0.36
USP47-202ENST00000339865 GNG13Q9P2W3 67 aa12.83□□□□□ -0.36
USP47-202ENST00000339865 PRKCDQ05655 676 aa12.83□□□□□ -0.36
USP47-202ENST00000339865 KLHL26Q53HC5 615 aa12.83□□□□□ -0.36
USP47-202ENST00000339865 GRHL2Q6ISB3 625 aa12.83□□□□□ -0.36
USP47-202ENST00000339865 CHST15Q7LFX5 561 aaPredicted RBP12.83□□□□□ -0.36
USP47-202ENST00000339865 RCN3Q96D15 328 aa12.83□□□□□ -0.36
USP47-202ENST00000339865 TRPV4Q9HBA0 871 aa12.83□□□□□ -0.36
USP47-202ENST00000339865 NUDT15Q9NV35 164 aa12.83□□□□□ -0.36
USP47-202ENST00000339865 MDFIC2A0A1B0GVS7 189 aa12.83□□□□□ -0.36
USP47-202ENST00000339865 CLPXO76031 633 aa12.83□□□□□ -0.36
USP47-202ENST00000339865 VDRP11473 427 aa12.83□□□□□ -0.36
USP47-202ENST00000339865 POLR2EP19388 210 aaKnown RBP12.83□□□□□ -0.36
USP47-202ENST00000339865 DGKAP23743 735 aa12.83□□□□□ -0.36
USP47-202ENST00000339865 EPHB3P54753 998 aa12.83□□□□□ -0.36
USP47-202ENST00000339865 BCL2L1Q07817 233 aa12.83□□□□□ -0.36
USP47-202ENST00000339865 SMARCB1Q12824 385 aa12.83□□□□□ -0.36
USP47-202ENST00000339865 POM121L1PQ3SYA9 428 aa12.83□□□□□ -0.36
USP47-202ENST00000339865 TMCO6Q96DC7 493 aa12.83□□□□□ -0.36
USP47-202ENST00000339865 DNPEPQ9ULA0 475 aa12.83□□□□□ -0.36
USP47-202ENST00000339865 FXYD6-FXYD2A0A087WZ82 144 aa12.82□□□□□ -0.36
USP47-202ENST00000339865 ANGPTL1O95841 491 aa12.82□□□□□ -0.36
USP47-202ENST00000339865 MAGEA8P43361 318 aa12.82□□□□□ -0.36
USP47-202ENST00000339865 GALNT11Q8NCW6 608 aa12.82□□□□□ -0.36
USP47-202ENST00000339865 FXYD6Q9H0Q3 95 aa12.82□□□□□ -0.36
USP47-202ENST00000339865 CISHQ9NSE2 258 aa12.82□□□□□ -0.36
USP47-202ENST00000339865 CCL15-CCL14A0A0B4J2E2 113 aa12.82□□□□□ -0.36
USP47-202ENST00000339865 E9PAM4 449 aa12.82□□□□□ -0.36
USP47-202ENST00000339865 PDCD5O14737 125 aa12.82□□□□□ -0.36
USP47-202ENST00000339865 ANXA5P08758 320 aa12.82□□□□□ -0.36
USP47-202ENST00000339865 HERVK_113P62684 666 aa12.82□□□□□ -0.36
USP47-202ENST00000339865 CCL15Q16663 113 aa12.82□□□□□ -0.36
USP47-202ENST00000339865 INTS6LQ5JSJ4 861 aaKnown RBP12.82□□□□□ -0.36
USP47-202ENST00000339865 USP49Q70CQ1 688 aa12.82□□□□□ -0.36
USP47-202ENST00000339865 USP45Q70EL2 814 aa12.82□□□□□ -0.36
USP47-202ENST00000339865 SMARCD1Q96GM5 515 aa12.82□□□□□ -0.36
USP47-202ENST00000339865 MBOAT7Q96N66 472 aa12.82□□□□□ -0.36
USP47-202ENST00000339865 ZNF717Q9BY31 904 aaPredicted RBP12.82□□□□□ -0.36
USP47-202ENST00000339865 COMMD3Q9UBI1 195 aa12.82□□□□□ -0.36
USP47-202ENST00000339865 MED31Q9Y3C7 131 aa12.82□□□□□ -0.36
USP47-202ENST00000339865 KDM5DQ9BY66 1539 aa12.82□□□□□ -0.36
USP47-202ENST00000339865 EPHA3P29320 983 aa12.82□□□□□ -0.36
USP47-202ENST00000339865 ARSHQ5FYA8 562 aa12.82□□□□□ -0.36
USP47-202ENST00000339865 FAM83AQ86UY5 434 aa12.82□□□□□ -0.36
USP47-202ENST00000339865 ZNF280BQ86YH2 543 aa12.82□□□□□ -0.36
USP47-202ENST00000339865 MB21D2Q8IYB1 491 aaPredicted RBP12.82□□□□□ -0.36
USP47-202ENST00000339865 AUTS2Q8WXX7 1259 aa12.82□□□□□ -0.36
USP47-202ENST00000339865 TESCQ96BS2 214 aa12.82□□□□□ -0.36
USP47-202ENST00000339865 FBXO6Q9NRD1 293 aaPredicted RBP12.82□□□□□ -0.36
USP47-202ENST00000339865 SEMA3GQ9NS98 782 aa12.82□□□□□ -0.36
USP47-202ENST00000339865 SLC28A1O00337 649 aa12.82□□□□□ -0.36
USP47-202ENST00000339865 TKTL1P51854 596 aa12.82□□□□□ -0.36
USP47-202ENST00000339865 S100A10P60903 97 aa12.82□□□□□ -0.36
USP47-202ENST00000339865 SNAPC2Q13487 334 aa12.82□□□□□ -0.36
USP47-202ENST00000339865 SPIN3Q5JUX0 258 aa12.82□□□□□ -0.36
USP47-202ENST00000339865 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP12.82□□□□□ -0.36
USP47-202ENST00000339865 CERKQ8TCT0 537 aa12.82□□□□□ -0.36
USP47-202ENST00000339865 COQ8BQ96D53 544 aa12.82□□□□□ -0.36
USP47-202ENST00000339865 IL22Q9GZX6 179 aa12.82□□□□□ -0.36
USP47-202ENST00000339865 SLC39A1Q9NY26 324 aa12.82□□□□□ -0.36
USP47-202ENST00000339865 PDP1Q9P0J1 537 aaPredicted RBP12.82□□□□□ -0.36
USP47-202ENST00000339865 TBC1D14Q9P2M4 693 aa12.82□□□□□ -0.36
USP47-202ENST00000339865 MINPP1Q9UNW1 487 aa12.82□□□□□ -0.36
USP47-202ENST00000339865 ACAT1P24752 427 aaKnown RBP12.82□□□□□ -0.36
USP47-202ENST00000339865 RPL3P39023 403 aaKnown RBP12.82□□□□□ -0.36
USP47-202ENST00000339865 ARCN1P48444 511 aaKnown RBP12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms