RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 GOLGA8NF8WBI6 632 aa5.6□□□□□ -1.51
CSDE1-202ENST00000339438 NDUFA2O43678 99 aa5.6□□□□□ -1.51
CSDE1-202ENST00000339438 XYLBO75191 536 aa5.6□□□□□ -1.51
CSDE1-202ENST00000339438 SEMA3DO95025 777 aa5.6□□□□□ -1.51
CSDE1-202ENST00000339438 IFNB1P01574 187 aa5.6□□□□□ -1.51
CSDE1-202ENST00000339438 PIGRP01833 764 aa5.6□□□□□ -1.51
CSDE1-202ENST00000339438 CKBP12277 381 aa5.6□□□□□ -1.51
CSDE1-202ENST00000339438 ATP6V1B2P21281 511 aa5.6□□□□□ -1.51
CSDE1-202ENST00000339438 BDNFP23560 247 aa5.6□□□□□ -1.51
CSDE1-202ENST00000339438 MFAP3P55082 362 aa5.6□□□□□ -1.51
CSDE1-202ENST00000339438 KCTD2Q14681 263 aa5.6□□□□□ -1.51
CSDE1-202ENST00000339438 INSCQ1MX18 579 aa5.6□□□□□ -1.51
CSDE1-202ENST00000339438 C15orf59Q2T9L4 293 aaPredicted RBP5.6□□□□□ -1.51
CSDE1-202ENST00000339438 NDUFAF5Q5TEU4 345 aa5.6□□□□□ -1.51
CSDE1-202ENST00000339438 MROH9Q5TGP6 573 aa5.6□□□□□ -1.51
CSDE1-202ENST00000339438 FAM205BPQ63HN1 556 aa5.6□□□□□ -1.51
CSDE1-202ENST00000339438 STEAP3Q658P3 488 aa5.6□□□□□ -1.51
CSDE1-202ENST00000339438 ZCCHC8Q6NZY4 707 aaKnown RBP5.6□□□□□ -1.51
CSDE1-202ENST00000339438 LINC00523Q86TU6 105 aa5.6□□□□□ -1.51
CSDE1-202ENST00000339438 SLFN12Q8IYM2 578 aa5.6□□□□□ -1.51
CSDE1-202ENST00000339438 MPP5Q8N3R9 675 aa5.6□□□□□ -1.51
CSDE1-202ENST00000339438 OR4M1Q8NGD0 313 aa5.6□□□□□ -1.51
CSDE1-202ENST00000339438 RHOXF1Q8NHV9 184 aa5.6□□□□□ -1.51
CSDE1-202ENST00000339438 SLC22A17Q8WUG5 538 aa5.6□□□□□ -1.51
CSDE1-202ENST00000339438 CANT1Q8WVQ1 401 aa5.6□□□□□ -1.51
CSDE1-202ENST00000339438 LPGAT1Q92604 370 aa5.6□□□□□ -1.51
CSDE1-202ENST00000339438 PGBD4Q96DM1 585 aa5.6□□□□□ -1.51
CSDE1-202ENST00000339438 MARK4Q96L34 752 aa5.6□□□□□ -1.51
CSDE1-202ENST00000339438 ST6GALNAC4Q9H4F1 302 aa5.6□□□□□ -1.51
CSDE1-202ENST00000339438 FAM96AQ9H5X1 160 aa5.6□□□□□ -1.51
CSDE1-202ENST00000339438 WDR6Q9NNW5 1121 aaKnown RBP5.6□□□□□ -1.51
CSDE1-202ENST00000339438 CCM2LQ9NUG4 571 aaPredicted RBP5.6□□□□□ -1.51
CSDE1-202ENST00000339438 ACOXLQ9NUZ1 547 aa5.6□□□□□ -1.51
CSDE1-202ENST00000339438 SLC17A6Q9P2U8 582 aa5.6□□□□□ -1.51
CSDE1-202ENST00000339438 BOLA1Q9Y3E2 137 aa5.6□□□□□ -1.51
CSDE1-202ENST00000339438 TOR1BO14657 336 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 TSPAN1O60635 241 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 TBCAO75347 108 aaKnown RBP5.59□□□□□ -1.51
CSDE1-202ENST00000339438 UPK1BO75841 260 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 GABARAPO95166 117 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 C1RP00736 705 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 SBK3P0C264 359 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 BMP1P13497 986 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 ITIH1P19827 911 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 TCN1P20061 433 aaPredicted RBP5.59□□□□□ -1.51
CSDE1-202ENST00000339438 CRHBPP24387 322 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 CD6P30203 668 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 SHMT2P34897 504 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 GPD2P43304 727 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 NLRP11P59045 1033 aaKnown RBP5.59□□□□□ -1.51
CSDE1-202ENST00000339438 MPP1Q00013 466 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 SNTA1Q13424 505 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 SLC12A1Q13621 1099 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 SMU1Q2TAY7 513 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 HABP4Q5JVS0 413 aaKnown RBP5.59□□□□□ -1.51
CSDE1-202ENST00000339438 DESI1Q6ICB0 168 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 SLC39A4Q6P5W5 647 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 TBPL2Q6SJ96 375 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 ABRAXAS1Q6UWZ7 409 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 BBS12Q6ZW61 710 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 CMTR2Q8IYT2 770 aaKnown RBP5.59□□□□□ -1.51
CSDE1-202ENST00000339438 UNC5BQ8IZJ1 945 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 MYCT1Q8N699 235 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 NIPA2Q8N8Q9 360 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 VN1R2Q8NFZ6 395 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 TAS1R2Q8TE23 839 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 FNIP1Q8TF40 1166 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 SEPT8Q92599 483 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 ISL2Q96A47 359 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 PAWRQ96IZ0 340 aaKnown RBP5.59□□□□□ -1.51
CSDE1-202ENST00000339438 LXNQ9BS40 222 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 TEKT3Q9BXF9 490 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 MTMR12Q9C0I1 747 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 LRRC40Q9H9A6 602 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 ZNF358Q9NW07 568 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 PAK1IP1Q9NWT1 392 aaPredicted RBP5.59□□□□□ -1.51
CSDE1-202ENST00000339438 DNMT3LQ9UJW3 386 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 GINS2Q9Y248 185 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 NME7Q9Y5B8 376 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 LOC400499M0QZD8 3231 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 PABPN1LA6NDY0 278 aaKnown RBP5.59□□□□□ -1.51
CSDE1-202ENST00000339438 H7C0C1 242 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 CTDSP2O14595 271 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 CHADO15335 359 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 SSX4O60224 188 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 KCNJ13O60928 360 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 KRT6AP02538 564 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 KRT6BP04259 564 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 LGALS2P05162 132 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 HADHAP40939 763 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 HTR3AP46098 478 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 TARDBPQ13148 414 aaKnown RBP eCLIP5.59□□□□□ -1.51
CSDE1-202ENST00000339438 PYCR3Q53H96 274 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 SWSAP1Q6NVH7 229 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 CYS1Q717R9 158 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 KCTD20Q7Z5Y7 419 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 DPP9Q86TI2 863 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 TLK2Q86UE8 772 aa5.59□□□□□ -1.51
CSDE1-202ENST00000339438 TAB3Q8N5C8 712 aaPredicted RBP5.59□□□□□ -1.51
CSDE1-202ENST00000339438 NDNFQ8TB73 568 aa5.59□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms