RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 IFT20Q8IY31 132 aa22.13■■□□□ 1.13
SDC3-202ENST00000339394 ASB12Q8WXK4 309 aa22.13■■□□□ 1.13
SDC3-202ENST00000339394 SNX19Q92543 992 aa22.13■■□□□ 1.13
SDC3-202ENST00000339394 ZNF778Q96MU6 729 aa22.13■■□□□ 1.13
SDC3-202ENST00000339394 PKD2L2Q9NZM6 624 aa22.13■■□□□ 1.13
SDC3-202ENST00000339394 CD84Q9UIB8 345 aa22.13■■□□□ 1.13
SDC3-202ENST00000339394 A0A1W2PPC4 97 aa22.12■■□□□ 1.13
SDC3-202ENST00000339394 RGSL1A5PLK6 1076 aa22.12■■□□□ 1.13
SDC3-202ENST00000339394 BANF1O75531 89 aa22.12■■□□□ 1.13
SDC3-202ENST00000339394 BPIP17213 487 aa22.12■■□□□ 1.13
SDC3-202ENST00000339394 MAOBP27338 520 aa22.12■■□□□ 1.13
SDC3-202ENST00000339394 ZNF140P52738 457 aaPredicted RBP22.12■■□□□ 1.13
SDC3-202ENST00000339394 DHX9Q08211 1270 aaKnown RBP22.12■■□□□ 1.13
SDC3-202ENST00000339394 LAMB3Q13751 1172 aa22.12■■□□□ 1.13
SDC3-202ENST00000339394 ELF2Q15723 593 aa22.12■■□□□ 1.13
SDC3-202ENST00000339394 CASC4Q6P4E1 433 aa22.12■■□□□ 1.13
SDC3-202ENST00000339394 PPHLN1Q8NEY8 458 aaKnown RBP22.12■■□□□ 1.13
SDC3-202ENST00000339394 OR13C4Q8NGS5 318 aa22.12■■□□□ 1.13
SDC3-202ENST00000339394 SCAMP4Q969E2 229 aa22.12■■□□□ 1.13
SDC3-202ENST00000339394 CENPTQ96BT3 561 aa22.12■■□□□ 1.13
SDC3-202ENST00000339394 KLF6Q99612 283 aaPredicted RBP22.12■■□□□ 1.13
SDC3-202ENST00000339394 ORAI3Q9BRQ5 295 aa22.12■■□□□ 1.13
SDC3-202ENST00000339394 FZD3Q9NPG1 666 aa22.12■■□□□ 1.13
SDC3-202ENST00000339394 BPTFQ12830 3046 aa22.12■■□□□ 1.13
SDC3-202ENST00000339394 EML5Q05BV3 1969 aa22.12■■□□□ 1.13
SDC3-202ENST00000339394 CCDC78A2IDD5 438 aa22.12■■□□□ 1.13
SDC3-202ENST00000339394 MEI4A8MW99 385 aa22.12■■□□□ 1.13
SDC3-202ENST00000339394 RAD51BO15315 384 aa22.12■■□□□ 1.13
SDC3-202ENST00000339394 CUL1Q13616 776 aa22.12■■□□□ 1.13
SDC3-202ENST00000339394 LRRC14Q15048 493 aa22.12■■□□□ 1.13
SDC3-202ENST00000339394 WSCD2Q2TBF2 565 aa22.12■■□□□ 1.13
SDC3-202ENST00000339394 BBS9Q3SYG4 887 aa22.12■■□□□ 1.13
SDC3-202ENST00000339394 DNAJC21Q5F1R6 531 aaKnown RBP22.12■■□□□ 1.13
SDC3-202ENST00000339394 NLRP9Q7RTR0 991 aa22.12■■□□□ 1.13
SDC3-202ENST00000339394 NRSN1Q8IZ57 195 aa22.12■■□□□ 1.13
SDC3-202ENST00000339394 GPR26Q8NDV2 337 aa22.12■■□□□ 1.13
SDC3-202ENST00000339394 STYXQ8WUJ0 223 aa22.12■■□□□ 1.13
SDC3-202ENST00000339394 UBXN4Q92575 508 aa22.12■■□□□ 1.13
SDC3-202ENST00000339394 NUS1Q96E22 293 aa22.12■■□□□ 1.13
SDC3-202ENST00000339394 LENG8Q96PV6 779 aaPredicted RBP22.12■■□□□ 1.13
SDC3-202ENST00000339394 KIFC1Q9BW19 673 aa22.12■■□□□ 1.13
SDC3-202ENST00000339394 C1QTNF7Q9BXJ2 289 aa22.12■■□□□ 1.13
SDC3-202ENST00000339394 FAM129AQ9BZQ8 928 aa22.12■■□□□ 1.13
SDC3-202ENST00000339394 ANKZF1Q9H8Y5 726 aa22.12■■□□□ 1.13
SDC3-202ENST00000339394 KCTD5Q9NXV2 234 aa22.12■■□□□ 1.13
SDC3-202ENST00000339394 NOL12Q9UGY1 213 aaKnown RBP eCLIP22.12■■□□□ 1.13
SDC3-202ENST00000339394 EIF2B4Q9UI10 523 aaKnown RBP22.12■■□□□ 1.13
SDC3-202ENST00000339394 V9GYY5 206 aaPredicted RBP22.12■■□□□ 1.13
SDC3-202ENST00000339394 MAGEB16A2A368 324 aa22.11■■□□□ 1.13
SDC3-202ENST00000339394 RHOBTB1O94844 696 aa22.11■■□□□ 1.13
SDC3-202ENST00000339394 HNRNPA2B1P22626 353 aaKnown RBP22.11■■□□□ 1.13
SDC3-202ENST00000339394 CD27P26842 260 aa22.11■■□□□ 1.13
SDC3-202ENST00000339394 ECHS1P30084 290 aa22.11■■□□□ 1.13
SDC3-202ENST00000339394 NUDT1P36639 197 aa22.11■■□□□ 1.13
SDC3-202ENST00000339394 DHPSP49366 369 aaPredicted RBP22.11■■□□□ 1.13
SDC3-202ENST00000339394 TMPRSS15P98073 1019 aa22.11■■□□□ 1.13
SDC3-202ENST00000339394 HLTFQ14527 1009 aaKnown RBP eCLIP22.11■■□□□ 1.13
SDC3-202ENST00000339394 PRR23BQ6ZRT6 265 aa22.11■■□□□ 1.13
SDC3-202ENST00000339394 TP53I13Q8NBR0 393 aaPredicted RBP22.11■■□□□ 1.13
SDC3-202ENST00000339394 PTCD2Q8WV60 388 aaKnown RBP22.11■■□□□ 1.13
SDC3-202ENST00000339394 DNASE2BQ8WZ79 361 aa22.11■■□□□ 1.13
SDC3-202ENST00000339394 AP2M1Q96CW1 435 aa22.11■■□□□ 1.13
SDC3-202ENST00000339394 DNAJC1Q96KC8 554 aaKnown RBP22.11■■□□□ 1.13
SDC3-202ENST00000339394 MYOCQ99972 504 aa22.11■■□□□ 1.13
SDC3-202ENST00000339394 ABCG8Q9H221 673 aa22.11■■□□□ 1.13
SDC3-202ENST00000339394 FAM83DQ9H4H8 585 aa22.11■■□□□ 1.13
SDC3-202ENST00000339394 MBNL1Q9NR56 388 aaKnown RBP22.11■■□□□ 1.13
SDC3-202ENST00000339394 SAMD15Q9P1V8 674 aa22.11■■□□□ 1.13
SDC3-202ENST00000339394 SOX13Q9UN79 622 aa22.11■■□□□ 1.13
SDC3-202ENST00000339394 DMTF1Q9Y222 760 aa22.11■■□□□ 1.13
SDC3-202ENST00000339394 MAD1L1Q9Y6D9 718 aa22.11■■□□□ 1.13
SDC3-202ENST00000339394 SLCO1B1Q9Y6L6 691 aa22.11■■□□□ 1.13
SDC3-202ENST00000339394 CBLBQ13191 982 aa22.1■■□□□ 1.13
SDC3-202ENST00000339394 SKIDA1Q1XH10 827 aa22.1■■□□□ 1.13
SDC3-202ENST00000339394 WDR45BQ5MNZ6 344 aa22.1■■□□□ 1.13
SDC3-202ENST00000339394 HP1BP3Q5SSJ5 553 aaPredicted RBP22.1■■□□□ 1.13
SDC3-202ENST00000339394 TSTD2Q5T7W7 516 aa22.1■■□□□ 1.13
SDC3-202ENST00000339394 ARMC3Q5W041 872 aa22.1■■□□□ 1.13
SDC3-202ENST00000339394 LYSMD4Q5XG99 296 aa22.1■■□□□ 1.13
SDC3-202ENST00000339394 RGL4Q8IZJ4 473 aa22.1■■□□□ 1.13
SDC3-202ENST00000339394 OR13J1Q8NGT2 312 aa22.1■■□□□ 1.13
SDC3-202ENST00000339394 MFSD3Q96ES6 412 aa22.1■■□□□ 1.13
SDC3-202ENST00000339394 SERAC1Q96JX3 654 aa22.1■■□□□ 1.13
SDC3-202ENST00000339394 PLEKHG4BQ96PX9 1271 aa22.1■■□□□ 1.13
SDC3-202ENST00000339394 C19orf43Q9BQ61 176 aa22.1■■□□□ 1.13
SDC3-202ENST00000339394 TRIM56Q9BRZ2 755 aaKnown RBP22.1■■□□□ 1.13
SDC3-202ENST00000339394 CDH19Q9H159 772 aa22.1■■□□□ 1.13
SDC3-202ENST00000339394 MRM3Q9HC36 420 aaKnown RBP22.1■■□□□ 1.13
SDC3-202ENST00000339394 IL26Q9NPH9 171 aa22.1■■□□□ 1.13
SDC3-202ENST00000339394 NLE1Q9NVX2 485 aaPredicted RBP22.1■■□□□ 1.13
SDC3-202ENST00000339394 SLC2A6Q9UGQ3 507 aa22.1■■□□□ 1.13
SDC3-202ENST00000339394 RIMKLBQ9ULI2 386 aa22.1■■□□□ 1.13
SDC3-202ENST00000339394 FNDC3AQ9Y2H6 1198 aaKnown RBP22.1■■□□□ 1.13
SDC3-202ENST00000339394 ABCA7Q8IZY2 2146 aa22.1■■□□□ 1.13
SDC3-202ENST00000339394 E7ESA3 106 aa22.09■■□□□ 1.13
SDC3-202ENST00000339394 PRAMEF26H0Y7S4 382 aa22.09■■□□□ 1.13
SDC3-202ENST00000339394 CCL22O00626 93 aa22.09■■□□□ 1.13
SDC3-202ENST00000339394 ITPKAP23677 461 aa22.09■■□□□ 1.13
SDC3-202ENST00000339394 HADHAP40939 763 aa22.09■■□□□ 1.13
SDC3-202ENST00000339394 DPTQ07507 201 aa22.09■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms