RNA–Protein interactions for RNA: ENST00000337331.9

NPHP3-201, Transcript of nephrocystin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP3, Length 4,362 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-201ENST00000337331 OR56A4Q8NGH8 313 aa16.07■□□□□ 0.16
NPHP3-201ENST00000337331 SHKBP1Q8TBC3 707 aa16.07■□□□□ 0.16
NPHP3-201ENST00000337331 NKD2Q969F2 451 aaPredicted RBP16.07■□□□□ 0.16
NPHP3-201ENST00000337331 OR52B2Q96RD2 323 aa16.07■□□□□ 0.16
NPHP3-201ENST00000337331 CGREF1Q99674 301 aa16.07■□□□□ 0.16
NPHP3-201ENST00000337331 SEMA4BQ9NPR2 832 aaPredicted RBP16.07■□□□□ 0.16
NPHP3-201ENST00000337331 EI24O14681 340 aa16.07■□□□□ 0.16
NPHP3-201ENST00000337331 SOX6P35712 828 aa16.07■□□□□ 0.16
NPHP3-201ENST00000337331 CLK2P49760 499 aaKnown RBP16.07■□□□□ 0.16
NPHP3-201ENST00000337331 PHKG1Q16816 387 aa16.07■□□□□ 0.16
NPHP3-201ENST00000337331 CCNYL2Q5T2Q4 361 aa16.07■□□□□ 0.16
NPHP3-201ENST00000337331 GLT6D1Q7Z4J2 308 aa16.07■□□□□ 0.16
NPHP3-201ENST00000337331 LGI2Q8N0V4 545 aa16.07■□□□□ 0.16
NPHP3-201ENST00000337331 OR7G1Q8NGA0 311 aa16.07■□□□□ 0.16
NPHP3-201ENST00000337331 P2RY11Q96G91 374 aa16.07■□□□□ 0.16
NPHP3-201ENST00000337331 ZNF486Q96H40 463 aaPredicted RBP16.07■□□□□ 0.16
NPHP3-201ENST00000337331 ANAPC2Q9UJX6 822 aa16.07■□□□□ 0.16
NPHP3-201ENST00000337331 ZNF536O15090 1300 aa16.07■□□□□ 0.16
NPHP3-201ENST00000337331 MRC1P22897 1456 aa16.07■□□□□ 0.16
NPHP3-201ENST00000337331 A0A1B0GTW7 788 aa16.07■□□□□ 0.16
NPHP3-201ENST00000337331 EGFRP00533 1210 aa16.07■□□□□ 0.16
NPHP3-201ENST00000337331 TFEBP19484 476 aa16.07■□□□□ 0.16
NPHP3-201ENST00000337331 NOMO1Q15155 1222 aa16.07■□□□□ 0.16
NPHP3-201ENST00000337331 TYSND1Q2T9J0 566 aa16.07■□□□□ 0.16
NPHP3-201ENST00000337331 SLC39A12Q504Y0 691 aa16.07■□□□□ 0.16
NPHP3-201ENST00000337331 DENND5AQ6IQ26 1287 aa16.07■□□□□ 0.16
NPHP3-201ENST00000337331 NANOGP8Q6NSW7 305 aa16.07■□□□□ 0.16
NPHP3-201ENST00000337331 PPP4R4Q6NUP7 873 aa16.07■□□□□ 0.16
NPHP3-201ENST00000337331 PIWIL4Q7Z3Z4 852 aaKnown RBP16.07■□□□□ 0.16
NPHP3-201ENST00000337331 CHPT1Q8WUD6 406 aa16.07■□□□□ 0.16
NPHP3-201ENST00000337331 TMEM245Q9H330 911 aa16.07■□□□□ 0.16
NPHP3-201ENST00000337331 XPR1Q9UBH6 696 aa16.07■□□□□ 0.16
NPHP3-201ENST00000337331 ATP6V1HQ9UI12 483 aa16.07■□□□□ 0.16
NPHP3-201ENST00000337331 SEC22BO75396 215 aa16.06■□□□□ 0.16
NPHP3-201ENST00000337331 ZNF7P17097 686 aaPredicted RBP16.06■□□□□ 0.16
NPHP3-201ENST00000337331 GPC1P35052 558 aa16.06■□□□□ 0.16
NPHP3-201ENST00000337331 GBE1Q04446 702 aa16.06■□□□□ 0.16
NPHP3-201ENST00000337331 TMEM86AQ8N2M4 240 aa16.06■□□□□ 0.16
NPHP3-201ENST00000337331 AMER2Q8N7J2 671 aa16.06■□□□□ 0.16
NPHP3-201ENST00000337331 HGH1Q9BTY7 390 aa16.06■□□□□ 0.16
NPHP3-201ENST00000337331 SNX15Q9NRS6 342 aa16.06■□□□□ 0.16
NPHP3-201ENST00000337331 DMAC2Q9NW81 257 aa16.06■□□□□ 0.16
NPHP3-201ENST00000337331 ZMYM5Q9UJ78 669 aa16.06■□□□□ 0.16
NPHP3-201ENST00000337331 FBXO5Q9UKT4 447 aa16.06■□□□□ 0.16
NPHP3-201ENST00000337331 CAPN14A8MX76 684 aa16.06■□□□□ 0.16
NPHP3-201ENST00000337331 PAPSS1O43252 624 aaPredicted RBP16.06■□□□□ 0.16
NPHP3-201ENST00000337331 C4BPAP04003 597 aaKnown RBP16.06■□□□□ 0.16
NPHP3-201ENST00000337331 ERBB2P04626 1255 aa16.06■□□□□ 0.16
NPHP3-201ENST00000337331 SNRPB2P08579 225 aaKnown RBP16.06■□□□□ 0.16
NPHP3-201ENST00000337331 LTA4HP09960 611 aaKnown RBP16.06■□□□□ 0.16
NPHP3-201ENST00000337331 MATKP42679 507 aa16.06■□□□□ 0.16
NPHP3-201ENST00000337331 RPS9P46781 194 aaKnown RBP16.06■□□□□ 0.16
NPHP3-201ENST00000337331 SLC9A3P48764 834 aa16.06■□□□□ 0.16
NPHP3-201ENST00000337331 ZNF284Q2VY69 593 aa16.06■□□□□ 0.16
NPHP3-201ENST00000337331 PLPPR4Q7Z2D5 763 aa16.06■□□□□ 0.16
NPHP3-201ENST00000337331 MILR1Q7Z6M3 343 aa16.06■□□□□ 0.16
NPHP3-201ENST00000337331 SPATA6LQ8N4H0 392 aa16.06■□□□□ 0.16
NPHP3-201ENST00000337331 PCSK9Q8NBP7 692 aaKnown RBP16.06■□□□□ 0.16
NPHP3-201ENST00000337331 RASSF5Q8WWW0 418 aa16.06■□□□□ 0.16
NPHP3-201ENST00000337331 RPF2Q9H7B2 306 aaKnown RBP16.06■□□□□ 0.16
NPHP3-201ENST00000337331 MARCH2Q9P0N8 246 aa16.06■□□□□ 0.16
NPHP3-201ENST00000337331 SH3BP4Q9P0V3 963 aa16.06■□□□□ 0.16
NPHP3-201ENST00000337331 ARHGAP28Q9P2N2 729 aa16.06■□□□□ 0.16
NPHP3-201ENST00000337331 CXorf49A8MYA2 514 aaPredicted RBP16.06■□□□□ 0.16
NPHP3-201ENST00000337331 PLIN3O60664 434 aa16.06■□□□□ 0.16
NPHP3-201ENST00000337331 CPNE3O75131 537 aaKnown RBP16.06■□□□□ 0.16
NPHP3-201ENST00000337331 MTA2O94776 668 aa16.06■□□□□ 0.16
NPHP3-201ENST00000337331 PRKACAP17612 351 aa16.06■□□□□ 0.16
NPHP3-201ENST00000337331 LBPP18428 481 aa16.06■□□□□ 0.16
NPHP3-201ENST00000337331 TTC23Q5W5X9 447 aa16.06■□□□□ 0.16
NPHP3-201ENST00000337331 CCDC149Q6ZUS6 474 aa16.06■□□□□ 0.16
NPHP3-201ENST00000337331 MON1BQ7L1V2 547 aa16.06■□□□□ 0.16
NPHP3-201ENST00000337331 DNAJB14Q8TBM8 379 aa16.06■□□□□ 0.16
NPHP3-201ENST00000337331 HERPUD2Q9BSE4 406 aa16.06■□□□□ 0.16
NPHP3-201ENST00000337331 TBCDQ9BTW9 1192 aa16.06■□□□□ 0.16
NPHP3-201ENST00000337331 POLR1EQ9GZS1 481 aaKnown RBP16.06■□□□□ 0.16
NPHP3-201ENST00000337331 SOX17Q9H6I2 414 aaPredicted RBP16.06■□□□□ 0.16
NPHP3-201ENST00000337331 TMCC3Q9ULS5 477 aa16.06■□□□□ 0.16
NPHP3-201ENST00000337331 CLDN5O00501 218 aa16.05■□□□□ 0.16
NPHP3-201ENST00000337331 PBLDP30039 288 aaPredicted RBP16.05■□□□□ 0.16
NPHP3-201ENST00000337331 OPRL1P41146 370 aa16.05■□□□□ 0.16
NPHP3-201ENST00000337331 CDKN2BP42772 138 aa16.05■□□□□ 0.16
NPHP3-201ENST00000337331 OR2B6P58173 313 aa16.05■□□□□ 0.16
NPHP3-201ENST00000337331 ELAVL2Q12926 359 aaKnown RBP16.05■□□□□ 0.16
NPHP3-201ENST00000337331 TRMT10BQ6PF06 316 aaKnown RBP16.05■□□□□ 0.16
NPHP3-201ENST00000337331 PTGR2Q8N8N7 351 aaPredicted RBP16.05■□□□□ 0.16
NPHP3-201ENST00000337331 SPPL2AQ8TCT8 520 aa16.05■□□□□ 0.16
NPHP3-201ENST00000337331 ACAT2Q9BWD1 397 aa16.05■□□□□ 0.16
NPHP3-201ENST00000337331 NAA50Q9GZZ1 169 aaKnown RBP16.05■□□□□ 0.16
NPHP3-201ENST00000337331 TMEM216Q9P0N5 145 aa16.05■□□□□ 0.16
NPHP3-201ENST00000337331 BCL9LQ86UU0 1499 aa16.05■□□□□ 0.16
NPHP3-201ENST00000337331 PRR23AA6NEV1 266 aa16.05■□□□□ 0.16
NPHP3-201ENST00000337331 TNFRSF10AO00220 468 aa16.05■□□□□ 0.16
NPHP3-201ENST00000337331 CACNA1FO60840 1977 aa16.05■□□□□ 0.16
NPHP3-201ENST00000337331 MYH1P12882 1939 aa16.05■□□□□ 0.16
NPHP3-201ENST00000337331 HOXB8P17481 243 aaPredicted RBP16.05■□□□□ 0.16
NPHP3-201ENST00000337331 EMP3P54852 163 aa16.05■□□□□ 0.16
NPHP3-201ENST00000337331 ANKRD13BQ86YJ7 626 aa16.05■□□□□ 0.16
NPHP3-201ENST00000337331 OR2T34Q8NGX1 318 aa16.05■□□□□ 0.16
NPHP3-201ENST00000337331 OR2T3Q8NH03 318 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms