RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 STK32AQ8WU08 396 aa12.62□□□□□ -0.39
SDC3-201ENST00000336798 TSEN15Q8WW01 171 aaKnown RBP12.62□□□□□ -0.39
SDC3-201ENST00000336798 TLR10Q9BXR5 811 aa12.62□□□□□ -0.39
SDC3-201ENST00000336798 XPR1Q9UBH6 696 aa12.62□□□□□ -0.39
SDC3-201ENST00000336798 PXDNLA1KZ92 1463 aa12.62□□□□□ -0.39
SDC3-201ENST00000336798 CPSF4LA6NMK7 179 aaKnown RBP12.62□□□□□ -0.39
SDC3-201ENST00000336798 SAGP10523 405 aaPredicted RBP12.62□□□□□ -0.39
SDC3-201ENST00000336798 LPOP22079 712 aaPredicted RBP12.62□□□□□ -0.39
SDC3-201ENST00000336798 ZNF132P52740 706 aa12.62□□□□□ -0.39
SDC3-201ENST00000336798 MINDY4Q4G0A6 757 aa12.62□□□□□ -0.39
SDC3-201ENST00000336798 ATCAYQ86WG3 371 aa12.62□□□□□ -0.39
SDC3-201ENST00000336798 CAMK1DQ8IU85 385 aa12.62□□□□□ -0.39
SDC3-201ENST00000336798 PHYKPLQ8IUZ5 450 aa12.62□□□□□ -0.39
SDC3-201ENST00000336798 SLC34A3Q8N130 599 aa12.62□□□□□ -0.39
SDC3-201ENST00000336798 OR2L5Q8NG80 312 aa12.62□□□□□ -0.39
SDC3-201ENST00000336798 SMPDL3BQ92485 455 aa12.62□□□□□ -0.39
SDC3-201ENST00000336798 ZNF184Q99676 751 aaPredicted RBP12.62□□□□□ -0.39
SDC3-201ENST00000336798 ACTL7BQ9Y614 415 aa12.62□□□□□ -0.39
SDC3-201ENST00000336798 TFECO14948 347 aaPredicted RBP12.62□□□□□ -0.39
SDC3-201ENST00000336798 OTCP00480 354 aa12.62□□□□□ -0.39
SDC3-201ENST00000336798 ITGA2P17301 1181 aa12.62□□□□□ -0.39
SDC3-201ENST00000336798 ARF4P18085 180 aaPredicted RBP12.62□□□□□ -0.39
SDC3-201ENST00000336798 CXCR3P49682 368 aa12.62□□□□□ -0.39
SDC3-201ENST00000336798 TIMM50Q3ZCQ8 353 aa12.62□□□□□ -0.39
SDC3-201ENST00000336798 RASSF6Q6ZTQ3 369 aa12.62□□□□□ -0.39
SDC3-201ENST00000336798 LNX2Q8N448 690 aa12.62□□□□□ -0.39
SDC3-201ENST00000336798 C18orf25Q96B23 403 aaPredicted RBP12.62□□□□□ -0.39
SDC3-201ENST00000336798 COPS4Q9BT78 406 aa12.62□□□□□ -0.39
SDC3-201ENST00000336798 KCNN2Q9H2S1 579 aa12.62□□□□□ -0.39
SDC3-201ENST00000336798 TLE6Q9H808 572 aa12.62□□□□□ -0.39
SDC3-201ENST00000336798 TPST2O60704 377 aa12.62□□□□□ -0.39
SDC3-201ENST00000336798 GNRH1P01148 92 aa12.62□□□□□ -0.39
SDC3-201ENST00000336798 ETS2P15036 469 aa12.62□□□□□ -0.39
SDC3-201ENST00000336798 MARCKSL1P49006 195 aa12.62□□□□□ -0.39
SDC3-201ENST00000336798 POU5F1Q01860 360 aaKnown RBP12.62□□□□□ -0.39
SDC3-201ENST00000336798 PRKG2Q13237 762 aa12.62□□□□□ -0.39
SDC3-201ENST00000336798 IL18R1Q13478 541 aa12.62□□□□□ -0.39
SDC3-201ENST00000336798 KCNA10Q16322 511 aa12.62□□□□□ -0.39
SDC3-201ENST00000336798 BROXQ5VW32 411 aa12.62□□□□□ -0.39
SDC3-201ENST00000336798 ITCHQ96J02 903 aa12.62□□□□□ -0.39
SDC3-201ENST00000336798 GDF3Q9NR23 364 aa12.62□□□□□ -0.39
SDC3-201ENST00000336798 CRNNQ9UBG3 495 aaPredicted RBP12.62□□□□□ -0.39
SDC3-201ENST00000336798 OAS3Q9Y6K5 1087 aaKnown RBP12.62□□□□□ -0.39
SDC3-201ENST00000336798 PTPRJQ12913 1337 aa12.62□□□□□ -0.39
SDC3-201ENST00000336798 ATF4P18848 351 aaPredicted RBP12.61□□□□□ -0.39
SDC3-201ENST00000336798 MTX3Q5HYI7 312 aa12.61□□□□□ -0.39
SDC3-201ENST00000336798 DDX59Q5T1V6 619 aaKnown RBP eCLIP12.61□□□□□ -0.39
SDC3-201ENST00000336798 PIWIL2Q8TC59 973 aaKnown RBP12.61□□□□□ -0.39
SDC3-201ENST00000336798 HPS1Q92902 700 aa12.61□□□□□ -0.39
SDC3-201ENST00000336798 ZHX1-C8orf76Q96EF9 292 aa12.61□□□□□ -0.39
SDC3-201ENST00000336798 ZNF607Q96SK3 696 aa12.61□□□□□ -0.39
SDC3-201ENST00000336798 ACO2Q99798 780 aaKnown RBP12.61□□□□□ -0.39
SDC3-201ENST00000336798 PNPOQ9NVS9 261 aa12.61□□□□□ -0.39
SDC3-201ENST00000336798 MAP4K5Q9Y4K4 846 aa12.61□□□□□ -0.39
SDC3-201ENST00000336798 SIN3BO75182 1162 aa12.61□□□□□ -0.39
SDC3-201ENST00000336798 SLC26A3P40879 764 aa12.61□□□□□ -0.39
SDC3-201ENST00000336798 CERCAMQ5T4B2 595 aa12.61□□□□□ -0.39
SDC3-201ENST00000336798 RHBDF2Q6PJF5 856 aa12.61□□□□□ -0.39
SDC3-201ENST00000336798 OAFQ86UD1 273 aa12.61□□□□□ -0.39
SDC3-201ENST00000336798 FAR1Q8WVX9 515 aa12.61□□□□□ -0.39
SDC3-201ENST00000336798 MYO19Q96H55 970 aa12.61□□□□□ -0.39
SDC3-201ENST00000336798 CEP295NLQ96MC4 621 aa12.61□□□□□ -0.39
SDC3-201ENST00000336798 GAL3ST4Q96RP7 486 aa12.61□□□□□ -0.39
SDC3-201ENST00000336798 ZNF490Q9ULM2 529 aaPredicted RBP12.61□□□□□ -0.39
SDC3-201ENST00000336798 PHF24Q9UPV7 400 aa12.61□□□□□ -0.39
SDC3-201ENST00000336798 TCRBV5S4A2TA0A5A2 114 aa12.61□□□□□ -0.39
SDC3-201ENST00000336798 C2orf71A6NGG8 1288 aa12.61□□□□□ -0.39
SDC3-201ENST00000336798 KRT36O76013 467 aa12.61□□□□□ -0.39
SDC3-201ENST00000336798 MAT2AP31153 395 aaKnown RBP12.61□□□□□ -0.39
SDC3-201ENST00000336798 CHN2P52757 468 aa12.61□□□□□ -0.39
SDC3-201ENST00000336798 NTRK3Q16288 839 aa12.61□□□□□ -0.39
SDC3-201ENST00000336798 OTOP2Q7RTS6 562 aa12.61□□□□□ -0.39
SDC3-201ENST00000336798 CMC1Q7Z7K0 106 aa12.61□□□□□ -0.39
SDC3-201ENST00000336798 LDB1Q86U70 411 aaPredicted RBP12.61□□□□□ -0.39
SDC3-201ENST00000336798 RALGPS2Q86X27 583 aaPredicted RBP12.61□□□□□ -0.39
SDC3-201ENST00000336798 ZCCHC10Q8TBK6 192 aa12.61□□□□□ -0.39
SDC3-201ENST00000336798 CD101Q93033 1021 aa12.61□□□□□ -0.39
SDC3-201ENST00000336798 TSSK3Q96PN8 268 aa12.61□□□□□ -0.39
SDC3-201ENST00000336798 RNF157Q96PX1 679 aa12.61□□□□□ -0.39
SDC3-201ENST00000336798 CDT1Q9H211 546 aa12.61□□□□□ -0.39
SDC3-201ENST00000336798 NXF3Q9H4D5 531 aaKnown RBP12.61□□□□□ -0.39
SDC3-201ENST00000336798 TMLHEQ9NVH6 421 aa12.61□□□□□ -0.39
SDC3-201ENST00000336798 WBP11Q9Y2W2 641 aaKnown RBP12.61□□□□□ -0.39
SDC3-201ENST00000336798 USP31Q70CQ4 1352 aa12.61□□□□□ -0.39
SDC3-201ENST00000336798 PDE2AO00408 941 aaPredicted RBP12.61□□□□□ -0.39
SDC3-201ENST00000336798 ENPP3O14638 875 aa12.61□□□□□ -0.39
SDC3-201ENST00000336798 SERPINB7O75635 380 aa12.61□□□□□ -0.39
SDC3-201ENST00000336798 UGT2B17O75795 530 aa12.61□□□□□ -0.39
SDC3-201ENST00000336798 ADH1CP00326 375 aa12.61□□□□□ -0.39
SDC3-201ENST00000336798 GLUD1P00367 558 aa12.61□□□□□ -0.39
SDC3-201ENST00000336798 ADSSP30520 456 aa12.61□□□□□ -0.39
SDC3-201ENST00000336798 LYPLAL1Q5VWZ2 237 aa12.61□□□□□ -0.39
SDC3-201ENST00000336798 DCBLD1Q8N8Z6 715 aa12.61□□□□□ -0.39
SDC3-201ENST00000336798 TPK1Q9H3S4 243 aa12.61□□□□□ -0.39
SDC3-201ENST00000336798 ING3Q9NXR8 418 aa12.61□□□□□ -0.39
SDC3-201ENST00000336798 ADAM28Q9UKQ2 775 aa12.61□□□□□ -0.39
SDC3-201ENST00000336798 TBC1D30Q9Y2I9 924 aa12.61□□□□□ -0.39
SDC3-201ENST00000336798 LRCH1Q9Y2L9 728 aa12.61□□□□□ -0.39
SDC3-201ENST00000336798 WTIPA6NIX2 430 aaPredicted RBP12.61□□□□□ -0.39
SDC3-201ENST00000336798 H3BNH8 94 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms