RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 TSACCQ96A04 125 aaPredicted RBP15.81■□□□□ 0.12
CLN3-201ENST00000333496 FAM118BQ9BPY3 351 aa15.81■□□□□ 0.12
CLN3-201ENST00000333496 MLPHQ9BV36 600 aaPredicted RBP15.81■□□□□ 0.12
CLN3-201ENST00000333496 LRRC61Q9BV99 259 aa15.81■□□□□ 0.12
CLN3-201ENST00000333496 TSGA10Q9BZW7 698 aa15.81■□□□□ 0.12
CLN3-201ENST00000333496 KCTD5Q9NXV2 234 aa15.81■□□□□ 0.12
CLN3-201ENST00000333496 UBP1Q9NZI7 540 aa15.81■□□□□ 0.12
CLN3-201ENST00000333496 APOBEC3BQ9UH17 382 aaKnown RBP15.81■□□□□ 0.12
CLN3-201ENST00000333496 CD84Q9UIB8 345 aa15.81■□□□□ 0.12
CLN3-201ENST00000333496 ASXL3Q9C0F0 2248 aa15.81■□□□□ 0.12
CLN3-201ENST00000333496 H7C0C1 242 aa15.8■□□□□ 0.12
CLN3-201ENST00000333496 AQP9O43315 295 aa15.8■□□□□ 0.12
CLN3-201ENST00000333496 HOXC4P09017 264 aaPredicted RBP15.8■□□□□ 0.12
CLN3-201ENST00000333496 NFKB1P19838 968 aa15.8■□□□□ 0.12
CLN3-201ENST00000333496 ATP5OP48047 213 aa15.8■□□□□ 0.12
CLN3-201ENST00000333496 KIAA1024LP59773 190 aa15.8■□□□□ 0.12
CLN3-201ENST00000333496 DPTQ07507 201 aa15.8■□□□□ 0.12
CLN3-201ENST00000333496 C1orf61Q13536 156 aa15.8■□□□□ 0.12
CLN3-201ENST00000333496 PCSK7Q16549 785 aa15.8■□□□□ 0.12
CLN3-201ENST00000333496 PRRT3Q5FWE3 981 aa15.8■□□□□ 0.12
CLN3-201ENST00000333496 FAXCQ5TGI0 409 aa15.8■□□□□ 0.12
CLN3-201ENST00000333496 CCDC181Q5TID7 509 aa15.8■□□□□ 0.12
CLN3-201ENST00000333496 ZNF662Q6ZS27 426 aa15.8■□□□□ 0.12
CLN3-201ENST00000333496 PID1Q7Z2X4 250 aa15.8■□□□□ 0.12
CLN3-201ENST00000333496 LMX1AQ8TE12 382 aa15.8■□□□□ 0.12
CLN3-201ENST00000333496 BTN2A2Q8WVV5 523 aa15.8■□□□□ 0.12
CLN3-201ENST00000333496 WDR92Q96MX6 357 aa15.8■□□□□ 0.12
CLN3-201ENST00000333496 VAT1Q99536 393 aa15.8■□□□□ 0.12
CLN3-201ENST00000333496 CLPBQ9H078 707 aa15.8■□□□□ 0.12
CLN3-201ENST00000333496 ABCG8Q9H221 673 aa15.8■□□□□ 0.12
CLN3-201ENST00000333496 NLGN3Q9NZ94 848 aa15.8■□□□□ 0.12
CLN3-201ENST00000333496 KLK13Q9UKR3 277 aa15.8■□□□□ 0.12
CLN3-201ENST00000333496 CSNK1G3Q9Y6M4 447 aa15.8■□□□□ 0.12
CLN3-201ENST00000333496 RP1P56715 2156 aa15.8■□□□□ 0.12
CLN3-201ENST00000333496 NEMP2A6NFY4 417 aa15.79■□□□□ 0.12
CLN3-201ENST00000333496 PMPCBO75439 489 aa15.79■□□□□ 0.12
CLN3-201ENST00000333496 TJP3O95049 919 aa15.79■□□□□ 0.12
CLN3-201ENST00000333496 SOD1P00441 154 aa15.79■□□□□ 0.12
CLN3-201ENST00000333496 CELA2BP08218 269 aaPredicted RBP15.79■□□□□ 0.12
CLN3-201ENST00000333496 RBP3P10745 1247 aa15.79■□□□□ 0.12
CLN3-201ENST00000333496 TSHRP16473 764 aa15.79■□□□□ 0.12
CLN3-201ENST00000333496 HTR1BP28222 390 aa15.79■□□□□ 0.12
CLN3-201ENST00000333496 CETN2P41208 172 aa15.79■□□□□ 0.12
CLN3-201ENST00000333496 ACADVLP49748 655 aa15.79■□□□□ 0.12
CLN3-201ENST00000333496 HK3P52790 923 aa15.79■□□□□ 0.12
CLN3-201ENST00000333496 SRP54P61011 504 aaKnown RBP15.79■□□□□ 0.12
CLN3-201ENST00000333496 CDK18Q07002 472 aa15.79■□□□□ 0.12
CLN3-201ENST00000333496 KLF1Q13351 362 aaPredicted RBP15.79■□□□□ 0.12
CLN3-201ENST00000333496 HID1Q8IV36 788 aa15.79■□□□□ 0.12
CLN3-201ENST00000333496 SCAMP4Q969E2 229 aa15.79■□□□□ 0.12
CLN3-201ENST00000333496 EID2BQ96D98 161 aa15.79■□□□□ 0.12
CLN3-201ENST00000333496 PDXPQ96GD0 296 aa15.79■□□□□ 0.12
CLN3-201ENST00000333496 TBATAQ96M53 351 aa15.79■□□□□ 0.12
CLN3-201ENST00000333496 TEX101Q9BY14 249 aa15.79■□□□□ 0.12
CLN3-201ENST00000333496 ADGRE3Q9BY15 652 aa15.79■□□□□ 0.12
CLN3-201ENST00000333496 WDR26Q9H7D7 661 aa15.79■□□□□ 0.12
CLN3-201ENST00000333496 FGF22Q9HCT0 170 aa15.79■□□□□ 0.12
CLN3-201ENST00000333496 MRPL40Q9NQ50 206 aaKnown RBP15.79■□□□□ 0.12
CLN3-201ENST00000333496 KLHL8Q9P2G9 620 aaPredicted RBP15.79■□□□□ 0.12
CLN3-201ENST00000333496 SPASTQ9UBP0 616 aa15.79■□□□□ 0.12
CLN3-201ENST00000333496 LY6G6EA0A0G2JKS1 128 aa15.79■□□□□ 0.12
CLN3-201ENST00000333496 C1orf232A0A0U1RR37 186 aa15.79■□□□□ 0.12
CLN3-201ENST00000333496 F5H423 210 aaPredicted RBP15.79■□□□□ 0.12
CLN3-201ENST00000333496 CCDC175P0C221 793 aa15.79■□□□□ 0.12
CLN3-201ENST00000333496 MYF5P13349 255 aa15.79■□□□□ 0.12
CLN3-201ENST00000333496 CKMT2P17540 419 aa15.79■□□□□ 0.12
CLN3-201ENST00000333496 EIF3EP60228 445 aaKnown RBP15.79■□□□□ 0.12
CLN3-201ENST00000333496 CCDC157Q569K6 752 aa15.79■□□□□ 0.12
CLN3-201ENST00000333496 KDELC1Q6UW63 502 aa15.79■□□□□ 0.12
CLN3-201ENST00000333496 RD3Q7Z3Z2 195 aa15.79■□□□□ 0.12
CLN3-201ENST00000333496 HEATR4Q86WZ0 1026 aa15.79■□□□□ 0.12
CLN3-201ENST00000333496 OR56A4Q8NGH8 313 aa15.79■□□□□ 0.12
CLN3-201ENST00000333496 OR1E3Q8WZA6 343 aa15.79■□□□□ 0.12
CLN3-201ENST00000333496 OXNAD1Q96HP4 312 aaPredicted RBP15.79■□□□□ 0.12
CLN3-201ENST00000333496 APOLD1Q96LR9 279 aa15.79■□□□□ 0.12
CLN3-201ENST00000333496 FCRL5Q96RD9 977 aa15.79■□□□□ 0.12
CLN3-201ENST00000333496 WDR24Q96S15 920 aa15.79■□□□□ 0.12
CLN3-201ENST00000333496 AGAP2Q99490 1192 aa15.79■□□□□ 0.12
CLN3-201ENST00000333496 SLC13A1Q9BZW2 595 aa15.79■□□□□ 0.12
CLN3-201ENST00000333496 LZTFL1Q9NQ48 299 aa15.79■□□□□ 0.12
CLN3-201ENST00000333496 KLQ9UEF7 1012 aa15.79■□□□□ 0.12
CLN3-201ENST00000333496 FAM153AQ9UHL3 310 aa15.79■□□□□ 0.12
CLN3-201ENST00000333496 DNPEPQ9ULA0 475 aa15.79■□□□□ 0.12
CLN3-201ENST00000333496 U3KQA8 63 aa15.79■□□□□ 0.12
CLN3-201ENST00000333496 FREM2Q5SZK8 3169 aa15.78■□□□□ 0.12
CLN3-201ENST00000333496 TCRBV7S2A1N4TA0A589 114 aa15.78■□□□□ 0.12
CLN3-201ENST00000333496 FAM221BA6H8Z2 402 aa15.78■□□□□ 0.12
CLN3-201ENST00000333496 CACNB4O00305 520 aaPredicted RBP15.78■□□□□ 0.12
CLN3-201ENST00000333496 FUCA1P04066 466 aa15.78■□□□□ 0.12
CLN3-201ENST00000333496 PIRTP0C851 137 aa15.78■□□□□ 0.12
CLN3-201ENST00000333496 MYCLP1P12525 358 aaPredicted RBP15.78■□□□□ 0.12
CLN3-201ENST00000333496 ACP1P24666 158 aa15.78■□□□□ 0.12
CLN3-201ENST00000333496 TEAD1P28347 426 aa15.78■□□□□ 0.12
CLN3-201ENST00000333496 BLKP51451 505 aa15.78■□□□□ 0.12
CLN3-201ENST00000333496 CDK3Q00526 305 aa15.78■□□□□ 0.12
CLN3-201ENST00000333496 DEFB133Q30KQ1 61 aa15.78■□□□□ 0.12
CLN3-201ENST00000333496 RAET1GQ6H3X3 334 aa15.78■□□□□ 0.12
CLN3-201ENST00000333496 DHRS13Q6UX07 377 aa15.78■□□□□ 0.12
CLN3-201ENST00000333496 ZNF765Q7L2R6 523 aa15.78■□□□□ 0.12
CLN3-201ENST00000333496 LYSMD3Q7Z3D4 306 aa15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms