RNA–Protein interactions for RNA: ENST00000315249.11

RFFL-201, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RFFL, Length 7,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-201ENST00000315249 CAB39LQ9H9S4 337 aa13.49□□□□□ -0.25
RFFL-201ENST00000315249 FBXW11Q9UKB1 542 aa13.49□□□□□ -0.25
RFFL-201ENST00000315249 VWA7Q9Y334 891 aa13.49□□□□□ -0.25
RFFL-201ENST00000315249 LRRC10BA6NIK2 292 aa13.49□□□□□ -0.25
RFFL-201ENST00000315249 APOA1P02647 267 aa13.49□□□□□ -0.25
RFFL-201ENST00000315249 CMPK1P30085 196 aa13.49□□□□□ -0.25
RFFL-201ENST00000315249 UBXN11Q5T124 520 aa13.49□□□□□ -0.25
RFFL-201ENST00000315249 FAM46DQ8NEK8 389 aa13.49□□□□□ -0.25
RFFL-201ENST00000315249 CCL22O00626 93 aa13.48□□□□□ -0.25
RFFL-201ENST00000315249 MATN4O95460 622 aa13.48□□□□□ -0.25
RFFL-201ENST00000315249 DDX6P26196 483 aaKnown RBP eCLIP13.48□□□□□ -0.25
RFFL-201ENST00000315249 FRG1Q14331 258 aaKnown RBP13.48□□□□□ -0.25
RFFL-201ENST00000315249 XKR4Q5GH76 650 aa13.48□□□□□ -0.25
RFFL-201ENST00000315249 KDM7AQ6ZMT4 941 aa13.48□□□□□ -0.25
RFFL-201ENST00000315249 SLC26A9Q7LBE3 791 aa13.48□□□□□ -0.25
RFFL-201ENST00000315249 CYP2S1Q96SQ9 504 aa13.48□□□□□ -0.25
RFFL-201ENST00000315249 MAT2BQ9NZL9 334 aa13.48□□□□□ -0.25
RFFL-201ENST00000315249 MT-CYBP00156 380 aaPredicted RBP13.48□□□□□ -0.25
RFFL-201ENST00000315249 CALB2P22676 271 aa13.48□□□□□ -0.25
RFFL-201ENST00000315249 NAE1Q13564 534 aa13.48□□□□□ -0.25
RFFL-201ENST00000315249 ATP6V1C2Q8NEY4 427 aa13.48□□□□□ -0.25
RFFL-201ENST00000315249 ZCCHC10Q8TBK6 192 aa13.48□□□□□ -0.25
RFFL-201ENST00000315249 TMEM237Q96Q45 408 aa13.48□□□□□ -0.25
RFFL-201ENST00000315249 MRPL57Q9BQC6 102 aaKnown RBP13.48□□□□□ -0.25
RFFL-201ENST00000315249 IL23AQ9NPF7 189 aa13.48□□□□□ -0.25
RFFL-201ENST00000315249 NFKBIL1Q9UBC1 381 aaPredicted RBP13.48□□□□□ -0.25
RFFL-201ENST00000315249 CA14Q9ULX7 337 aa13.48□□□□□ -0.25
RFFL-201ENST00000315249 PCDHB11Q9Y5F2 797 aa13.48□□□□□ -0.25
RFFL-201ENST00000315249 FAM237AA0A1B0GTK4 181 aa13.48□□□□□ -0.25
RFFL-201ENST00000315249 MRASO14807 208 aa13.48□□□□□ -0.25
RFFL-201ENST00000315249 LRRC32Q14392 662 aa13.48□□□□□ -0.25
RFFL-201ENST00000315249 INAVAQ3KP66 663 aa13.48□□□□□ -0.25
RFFL-201ENST00000315249 RASGRP3Q8IV61 690 aa13.48□□□□□ -0.25
RFFL-201ENST00000315249 RNF145Q96MT1 663 aa13.48□□□□□ -0.25
RFFL-201ENST00000315249 GMLQ99445 158 aa13.48□□□□□ -0.25
RFFL-201ENST00000315249 SRMSQ9H3Y6 488 aa13.48□□□□□ -0.25
RFFL-201ENST00000315249 SPATA6Q9NWH7 488 aaPredicted RBP13.48□□□□□ -0.25
RFFL-201ENST00000315249 HMGXB4Q9UGU5 601 aa13.48□□□□□ -0.25
RFFL-201ENST00000315249 SLC28A1O00337 649 aa13.48□□□□□ -0.25
RFFL-201ENST00000315249 ATP6V1B1P15313 513 aa13.48□□□□□ -0.25
RFFL-201ENST00000315249 LBPP18428 481 aa13.48□□□□□ -0.25
RFFL-201ENST00000315249 CREG2Q8IUH2 290 aa13.48□□□□□ -0.25
RFFL-201ENST00000315249 C12orf76Q8N812 135 aaPredicted RBP13.48□□□□□ -0.25
RFFL-201ENST00000315249 WFIKKN2Q8TEU8 576 aa13.48□□□□□ -0.25
RFFL-201ENST00000315249 IRF7Q92985 503 aa13.48□□□□□ -0.25
RFFL-201ENST00000315249 CNPPD1Q9BV87 410 aa13.48□□□□□ -0.25
RFFL-201ENST00000315249 ARMCX1Q9P291 453 aa13.48□□□□□ -0.25
RFFL-201ENST00000315249 SCN11AQ9UI33 1791 aa13.48□□□□□ -0.25
RFFL-201ENST00000315249 VGLL3A8MV65 326 aa13.48□□□□□ -0.25
RFFL-201ENST00000315249 M0R3G1 203 aa13.48□□□□□ -0.25
RFFL-201ENST00000315249 IQCF3P0C7M6 154 aa13.48□□□□□ -0.25
RFFL-201ENST00000315249 TFPIP10646 304 aa13.48□□□□□ -0.25
RFFL-201ENST00000315249 ZNF24P17028 368 aa13.48□□□□□ -0.25
RFFL-201ENST00000315249 NT5EP21589 574 aa13.48□□□□□ -0.25
RFFL-201ENST00000315249 MAPKAPK2P49137 400 aa13.48□□□□□ -0.25
RFFL-201ENST00000315249 IL5RAQ01344 420 aa13.48□□□□□ -0.25
RFFL-201ENST00000315249 EPHX4Q8IUS5 362 aa13.48□□□□□ -0.25
RFFL-201ENST00000315249 ZNF75CPQ92670 426 aaPredicted RBP13.48□□□□□ -0.25
RFFL-201ENST00000315249 PRR23D1E9PI22 279 aaPredicted RBP13.48□□□□□ -0.25
RFFL-201ENST00000315249 PRR23D2P0DMB1 279 aaPredicted RBP13.48□□□□□ -0.25
RFFL-201ENST00000315249 ATP5F1P24539 256 aaPredicted RBP13.48□□□□□ -0.25
RFFL-201ENST00000315249 MTAPQ13126 283 aa13.48□□□□□ -0.25
RFFL-201ENST00000315249 CYP2R1Q6VVX0 501 aa13.48□□□□□ -0.25
RFFL-201ENST00000315249 ZNF563Q8TA94 476 aa13.48□□□□□ -0.25
RFFL-201ENST00000315249 CYLDQ9NQC7 956 aa13.48□□□□□ -0.25
RFFL-201ENST00000315249 DUSP12Q9UNI6 340 aa13.48□□□□□ -0.25
RFFL-201ENST00000315249 ATG7O95352 703 aa13.47□□□□□ -0.25
RFFL-201ENST00000315249 ITGA2BP08514 1039 aa13.47□□□□□ -0.25
RFFL-201ENST00000315249 CD48P09326 243 aa13.47□□□□□ -0.25
RFFL-201ENST00000315249 L1CAMP32004 1257 aa13.47□□□□□ -0.25
RFFL-201ENST00000315249 RPL14P50914 215 aaKnown RBP13.47□□□□□ -0.25
RFFL-201ENST00000315249 CMTM8Q8IZV2 173 aa13.47□□□□□ -0.25
RFFL-201ENST00000315249 RPRD1BQ9NQG5 326 aaKnown RBP13.47□□□□□ -0.25
RFFL-201ENST00000315249 PCDHGC3Q9UN70 934 aa13.47□□□□□ -0.25
RFFL-201ENST00000315249 LRCH4O75427 683 aa13.47□□□□□ -0.25
RFFL-201ENST00000315249 NDST2P52849 883 aa13.47□□□□□ -0.25
RFFL-201ENST00000315249 CACNG1Q06432 222 aa13.47□□□□□ -0.25
RFFL-201ENST00000315249 GCNT7Q6ZNI0 430 aa13.47□□□□□ -0.25
RFFL-201ENST00000315249 TBATAQ96M53 351 aa13.47□□□□□ -0.25
RFFL-201ENST00000315249 C12orf66Q96MD2 445 aa13.47□□□□□ -0.25
RFFL-201ENST00000315249 CDH19Q9H159 772 aa13.47□□□□□ -0.25
RFFL-201ENST00000315249 GBA3Q9H227 469 aa13.47□□□□□ -0.25
RFFL-201ENST00000315249 CARS2Q9HA77 564 aaKnown RBP13.47□□□□□ -0.25
RFFL-201ENST00000315249 APOBEC3GQ9HC16 384 aaKnown RBP13.47□□□□□ -0.25
RFFL-201ENST00000315249 ASLP04424 464 aa13.47□□□□□ -0.25
RFFL-201ENST00000315249 HNRNPLP14866 589 aaKnown RBP eCLIP13.47□□□□□ -0.25
RFFL-201ENST00000315249 LRPAP1P30533 357 aa13.47□□□□□ -0.25
RFFL-201ENST00000315249 IGFALSP35858 605 aa13.47□□□□□ -0.25
RFFL-201ENST00000315249 C9orf64Q5T6V5 341 aa13.47□□□□□ -0.25
RFFL-201ENST00000315249 MSANTD2Q6P1R3 559 aa13.47□□□□□ -0.25
RFFL-201ENST00000315249 TMCO2Q7Z6W1 182 aaPredicted RBP13.47□□□□□ -0.25
RFFL-201ENST00000315249 IPCEF1Q8WWN9 437 aaPredicted RBP13.47□□□□□ -0.25
RFFL-201ENST00000315249 MCMBPQ9BTE3 642 aa13.47□□□□□ -0.25
RFFL-201ENST00000315249 C1orf50Q9BV19 199 aa13.47□□□□□ -0.25
RFFL-201ENST00000315249 ATG10Q9H0Y0 220 aa13.47□□□□□ -0.25
RFFL-201ENST00000315249 C4BP0C0L5 1744 aa13.47□□□□□ -0.25
RFFL-201ENST00000315249 H3BNH8 94 aa13.47□□□□□ -0.25
RFFL-201ENST00000315249 RPIAP49247 311 aa13.47□□□□□ -0.25
RFFL-201ENST00000315249 MAPKAPK3Q16644 382 aa13.47□□□□□ -0.25
RFFL-201ENST00000315249 PRMT9Q6P2P2 845 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms