RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 GPR156Q8NFN8 814 aa13.87□□□□□ -0.19
CSPG4-201ENST00000308508 MAGEE1Q9HCI5 957 aa13.87□□□□□ -0.19
CSPG4-201ENST00000308508 PAK6Q9NQU5 681 aaPredicted RBP13.87□□□□□ -0.19
CSPG4-201ENST00000308508 SEMA3GQ9NS98 782 aa13.87□□□□□ -0.19
CSPG4-201ENST00000308508 PCDHGB3Q9Y5G1 929 aa13.87□□□□□ -0.19
CSPG4-201ENST00000308508 MYH6P13533 1939 aa13.87□□□□□ -0.19
CSPG4-201ENST00000308508 PHC1P78364 1004 aa13.87□□□□□ -0.19
CSPG4-201ENST00000308508 LIPEQ05469 1076 aa13.87□□□□□ -0.19
CSPG4-201ENST00000308508 BLMHQ13867 455 aa13.87□□□□□ -0.19
CSPG4-201ENST00000308508 MIIPQ5JXC2 388 aa13.87□□□□□ -0.19
CSPG4-201ENST00000308508 CLPTM1LQ96KA5 538 aa13.87□□□□□ -0.19
CSPG4-201ENST00000308508 ZDHHC15Q96MV8 337 aa13.87□□□□□ -0.19
CSPG4-201ENST00000308508 MKLN1Q9UL63 735 aa13.87□□□□□ -0.19
CSPG4-201ENST00000308508 MAGEA12P43365 314 aa13.86□□□□□ -0.19
CSPG4-201ENST00000308508 ADAM8P78325 824 aa13.86□□□□□ -0.19
CSPG4-201ENST00000308508 SLC2A14Q8TDB8 520 aa13.86□□□□□ -0.19
CSPG4-201ENST00000308508 SLCO1B3Q9NPD5 702 aa13.86□□□□□ -0.19
CSPG4-201ENST00000308508 DISP1Q96F81 1524 aa13.86□□□□□ -0.19
CSPG4-201ENST00000308508 E5RJQ4 531 aa13.86□□□□□ -0.19
CSPG4-201ENST00000308508 NR4A1P22736 598 aa13.86□□□□□ -0.19
CSPG4-201ENST00000308508 ZNF697Q5TEC3 545 aa13.86□□□□□ -0.19
CSPG4-201ENST00000308508 ANKRD26P1Q6NSI1 321 aa13.86□□□□□ -0.19
CSPG4-201ENST00000308508 GMCL1P1Q8NEA9 526 aa13.86□□□□□ -0.19
CSPG4-201ENST00000308508 OR12D3Q9UGF7 316 aa13.86□□□□□ -0.19
CSPG4-201ENST00000308508 TRAF6Q9Y4K3 522 aa13.86□□□□□ -0.19
CSPG4-201ENST00000308508 F8VP50 259 aa13.86□□□□□ -0.19
CSPG4-201ENST00000308508 TULP3O75386 442 aa13.86□□□□□ -0.19
CSPG4-201ENST00000308508 CDKL1Q00532 357 aa13.86□□□□□ -0.19
CSPG4-201ENST00000308508 ZNF548Q8NEK5 533 aaPredicted RBP13.86□□□□□ -0.19
CSPG4-201ENST00000308508 FCGR1BQ92637 280 aa13.86□□□□□ -0.19
CSPG4-201ENST00000308508 PPCDCQ96CD2 204 aa13.86□□□□□ -0.19
CSPG4-201ENST00000308508 GULP1Q9UBP9 304 aa13.86□□□□□ -0.19
CSPG4-201ENST00000308508 POLR3HQ9Y535 204 aaPredicted RBP13.86□□□□□ -0.19
CSPG4-201ENST00000308508 KDM4BO94953 1096 aa13.86□□□□□ -0.19
CSPG4-201ENST00000308508 TRUB2O95900 331 aaKnown RBP13.86□□□□□ -0.19
CSPG4-201ENST00000308508 FABP3P05413 133 aa13.86□□□□□ -0.19
CSPG4-201ENST00000308508 ECHS1P30084 290 aa13.86□□□□□ -0.19
CSPG4-201ENST00000308508 ZNF143P52747 638 aaPredicted RBP13.86□□□□□ -0.19
CSPG4-201ENST00000308508 MANFP55145 182 aaKnown RBP13.86□□□□□ -0.19
CSPG4-201ENST00000308508 FBXL19Q6PCT2 694 aa13.86□□□□□ -0.19
CSPG4-201ENST00000308508 UBE2Q1Q7Z7E8 422 aa13.86□□□□□ -0.19
CSPG4-201ENST00000308508 CLNKQ7Z7G1 428 aa13.86□□□□□ -0.19
CSPG4-201ENST00000308508 SVOPLQ8N434 492 aa13.86□□□□□ -0.19
CSPG4-201ENST00000308508 SNIP1Q8TAD8 396 aaKnown RBP13.86□□□□□ -0.19
CSPG4-201ENST00000308508 SNTG2Q9NY99 539 aa13.86□□□□□ -0.19
CSPG4-201ENST00000308508 CPTPQ5TA50 214 aa13.86□□□□□ -0.19
CSPG4-201ENST00000308508 KLHL5Q96PQ7 755 aa13.86□□□□□ -0.19
CSPG4-201ENST00000308508 TUBGCP5Q96RT8 1024 aa13.86□□□□□ -0.19
CSPG4-201ENST00000308508 C2orf49Q9BVC5 232 aaPredicted RBP13.86□□□□□ -0.19
CSPG4-201ENST00000308508 SMURF2Q9HAU4 748 aa13.86□□□□□ -0.19
CSPG4-201ENST00000308508 DNAJC28Q9NX36 388 aa13.86□□□□□ -0.19
CSPG4-201ENST00000308508 CSF1RP07333 972 aa13.86□□□□□ -0.19
CSPG4-201ENST00000308508 GIMD1P0DJR0 217 aa13.86□□□□□ -0.19
CSPG4-201ENST00000308508 FAM13CQ8NE31 585 aa13.86□□□□□ -0.19
CSPG4-201ENST00000308508 RNF17Q9BXT8 1623 aaKnown RBP13.86□□□□□ -0.19
CSPG4-201ENST00000308508 CABYRO75952 493 aa13.85□□□□□ -0.19
CSPG4-201ENST00000308508 LRATO95237 230 aa13.85□□□□□ -0.19
CSPG4-201ENST00000308508 S100A12P80511 92 aa13.85□□□□□ -0.19
CSPG4-201ENST00000308508 DUPD1Q68J44 220 aa13.85□□□□□ -0.19
CSPG4-201ENST00000308508 ZPBP2Q6X784 338 aa13.85□□□□□ -0.19
CSPG4-201ENST00000308508 FBXO33Q7Z6M2 555 aa13.85□□□□□ -0.19
CSPG4-201ENST00000308508 PGAM4Q8N0Y7 254 aa13.85□□□□□ -0.19
CSPG4-201ENST00000308508 CPSF7Q8N684 471 aaKnown RBP13.85□□□□□ -0.19
CSPG4-201ENST00000308508 AKAP1Q92667 903 aaKnown RBP eCLIP13.85□□□□□ -0.19
CSPG4-201ENST00000308508 WNT8BQ93098 351 aa13.85□□□□□ -0.19
CSPG4-201ENST00000308508 CCDC177Q9NQR7 707 aaPredicted RBP13.85□□□□□ -0.19
CSPG4-201ENST00000308508 INTS10Q9NVR2 710 aaKnown RBP13.85□□□□□ -0.19
CSPG4-201ENST00000308508 XKRYO14609 159 aa13.85□□□□□ -0.19
CSPG4-201ENST00000308508 HNRNPLP14866 589 aaKnown RBP eCLIP13.85□□□□□ -0.19
CSPG4-201ENST00000308508 SNRPD1P62314 119 aaKnown RBP13.85□□□□□ -0.19
CSPG4-201ENST00000308508 HERC3Q15034 1050 aa13.85□□□□□ -0.19
CSPG4-201ENST00000308508 ZBTB6Q15916 424 aa13.85□□□□□ -0.19
CSPG4-201ENST00000308508 PDCD4Q53EL6 469 aaKnown RBP13.85□□□□□ -0.19
CSPG4-201ENST00000308508 DET1Q7L5Y6 550 aa13.85□□□□□ -0.19
CSPG4-201ENST00000308508 TXNRD3Q86VQ6 643 aa13.85□□□□□ -0.19
CSPG4-201ENST00000308508 OR10H5Q8NGA6 315 aa13.85□□□□□ -0.19
CSPG4-201ENST00000308508 KCTD4Q8WVF5 259 aa13.85□□□□□ -0.19
CSPG4-201ENST00000308508 CXorf21Q9HAI6 301 aa13.85□□□□□ -0.19
CSPG4-201ENST00000308508 SEC14L3Q9UDX4 400 aa13.85□□□□□ -0.19
CSPG4-201ENST00000308508 PLA2R1Q13018 1463 aa13.85□□□□□ -0.19
CSPG4-201ENST00000308508 SERPINA3P01011 423 aa13.85□□□□□ -0.19
CSPG4-201ENST00000308508 PSKH1P11801 424 aa13.85□□□□□ -0.19
CSPG4-201ENST00000308508 PRKCIP41743 596 aa13.85□□□□□ -0.19
CSPG4-201ENST00000308508 AHSA2Q719I0 299 aa13.85□□□□□ -0.19
CSPG4-201ENST00000308508 OMDQ99983 421 aa13.85□□□□□ -0.19
CSPG4-201ENST00000308508 ABCC3O15438 1527 aa13.85□□□□□ -0.19
CSPG4-201ENST00000308508 GPIP06744 558 aa13.85□□□□□ -0.19
CSPG4-201ENST00000308508 CLUP10909 449 aa13.85□□□□□ -0.19
CSPG4-201ENST00000308508 ABCG1P45844 678 aa13.85□□□□□ -0.19
CSPG4-201ENST00000308508 CCR3P51677 355 aa13.85□□□□□ -0.19
CSPG4-201ENST00000308508 CARTPTQ16568 116 aa13.85□□□□□ -0.19
CSPG4-201ENST00000308508 ZNF670Q9BS34 389 aa13.85□□□□□ -0.19
CSPG4-201ENST00000308508 MECRQ9BV79 373 aa13.85□□□□□ -0.19
CSPG4-201ENST00000308508 MRTO4Q9UKD2 239 aaKnown RBP13.85□□□□□ -0.19
CSPG4-201ENST00000308508 PCDHB12Q9Y5F1 795 aa13.85□□□□□ -0.19
CSPG4-201ENST00000308508 OR2AT4A6NND4 320 aa13.85□□□□□ -0.19
CSPG4-201ENST00000308508 RIIAD1A6NNX1 92 aa13.85□□□□□ -0.19
CSPG4-201ENST00000308508 TP73O15350 636 aa13.85□□□□□ -0.19
CSPG4-201ENST00000308508 RPLP0P05388 317 aaKnown RBP13.85□□□□□ -0.19
CSPG4-201ENST00000308508 CRHR1P34998 444 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms