RNA–Protein interactions for RNA: ENST00000307017.8

USP38-201, Transcript of ubiquitin specific peptidase 38, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP38, Length 7,009 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP38-201ENST00000307017 TMEM39AQ9NV64 488 aa12.64□□□□□ -0.39
USP38-201ENST00000307017 EXD2Q9NVH0 621 aa12.64□□□□□ -0.39
USP38-201ENST00000307017 MARCH2Q9P0N8 246 aa12.64□□□□□ -0.39
USP38-201ENST00000307017 GNEQ9Y223 722 aaKnown RBP12.64□□□□□ -0.39
USP38-201ENST00000307017 ALKQ9UM73 1620 aa12.64□□□□□ -0.39
USP38-201ENST00000307017 RNF225M0QZC1 329 aaPredicted RBP12.64□□□□□ -0.39
USP38-201ENST00000307017 BIRC5O15392 142 aa12.64□□□□□ -0.39
USP38-201ENST00000307017 ZNF846Q147U1 533 aa12.64□□□□□ -0.39
USP38-201ENST00000307017 OCLNQ16625 522 aa12.64□□□□□ -0.39
USP38-201ENST00000307017 PPM1LQ5SGD2 360 aa12.64□□□□□ -0.39
USP38-201ENST00000307017 PAOXQ6QHF9 649 aa12.64□□□□□ -0.39
USP38-201ENST00000307017 CLK4Q9HAZ1 481 aaKnown RBP12.64□□□□□ -0.39
USP38-201ENST00000307017 POPDC2Q9HBU9 364 aa12.64□□□□□ -0.39
USP38-201ENST00000307017 TRIM38O00635 465 aa12.63□□□□□ -0.39
USP38-201ENST00000307017 SLC25A27O95847 323 aa12.63□□□□□ -0.39
USP38-201ENST00000307017 UBAP2Q5T6F2 1119 aaKnown RBP12.63□□□□□ -0.39
USP38-201ENST00000307017 ZNF544Q6NX49 715 aa12.63□□□□□ -0.39
USP38-201ENST00000307017 FRRS1Q6ZNA5 592 aa12.63□□□□□ -0.39
USP38-201ENST00000307017 PYROXD2Q8N2H3 581 aa12.63□□□□□ -0.39
USP38-201ENST00000307017 STK40Q8N2I9 435 aa12.63□□□□□ -0.39
USP38-201ENST00000307017 SPERTQ8NA61 448 aa12.63□□□□□ -0.39
USP38-201ENST00000307017 SMPDL3BQ92485 455 aa12.63□□□□□ -0.39
USP38-201ENST00000307017 C18orf25Q96B23 403 aaPredicted RBP12.63□□□□□ -0.39
USP38-201ENST00000307017 EXOSC8Q96B26 276 aaKnown RBP12.63□□□□□ -0.39
USP38-201ENST00000307017 DIRAS2Q96HU8 199 aa12.63□□□□□ -0.39
USP38-201ENST00000307017 SP140LQ9H930 580 aa12.63□□□□□ -0.39
USP38-201ENST00000307017 BRD7Q9NPI1 651 aa12.63□□□□□ -0.39
USP38-201ENST00000307017 NEDD8-MDP1E9PL57 170 aa12.63□□□□□ -0.39
USP38-201ENST00000307017 SAGP10523 405 aaPredicted RBP12.63□□□□□ -0.39
USP38-201ENST00000307017 PTPN1P18031 435 aaKnown RBP12.63□□□□□ -0.39
USP38-201ENST00000307017 LAPTM5Q13571 262 aa12.63□□□□□ -0.39
USP38-201ENST00000307017 NTRK3Q16288 839 aa12.63□□□□□ -0.39
USP38-201ENST00000307017 ZNF484Q5JVG2 852 aa12.63□□□□□ -0.39
USP38-201ENST00000307017 IDNKQ5T6J7 187 aa12.63□□□□□ -0.39
USP38-201ENST00000307017 GPR158Q5T848 1215 aa12.63□□□□□ -0.39
USP38-201ENST00000307017 LIN54Q6MZP7 749 aa12.63□□□□□ -0.39
USP38-201ENST00000307017 RBM43Q6ZSC3 357 aaKnown RBP12.63□□□□□ -0.39
USP38-201ENST00000307017 GPRIN3Q6ZVF9 776 aa12.63□□□□□ -0.39
USP38-201ENST00000307017 MREGQ8N565 214 aa12.63□□□□□ -0.39
USP38-201ENST00000307017 OR5B17Q8NGF7 314 aa12.63□□□□□ -0.39
USP38-201ENST00000307017 SENP8Q96LD8 212 aa12.63□□□□□ -0.39
USP38-201ENST00000307017 POLR1EQ9GZS1 481 aaKnown RBP12.63□□□□□ -0.39
USP38-201ENST00000307017 MFSD1Q9H3U5 465 aa12.63□□□□□ -0.39
USP38-201ENST00000307017 WASF2Q9Y6W5 498 aa12.63□□□□□ -0.39
USP38-201ENST00000307017 J3QRK9 145 aa12.63□□□□□ -0.39
USP38-201ENST00000307017 RYKP34925 604 aa12.63□□□□□ -0.39
USP38-201ENST00000307017 PPM1AP35813 382 aa12.63□□□□□ -0.39
USP38-201ENST00000307017 CA9Q16790 459 aa12.63□□□□□ -0.39
USP38-201ENST00000307017 MYDGFQ969H8 173 aa12.63□□□□□ -0.39
USP38-201ENST00000307017 NMUR2Q9GZQ4 415 aa12.63□□□□□ -0.39
USP38-201ENST00000307017 KIAA1257Q9ULG3 409 aa12.63□□□□□ -0.39
USP38-201ENST00000307017 SF3B1O75533 1304 aaKnown RBP eCLIP12.63□□□□□ -0.39
USP38-201ENST00000307017 MEN1O00255 615 aa12.63□□□□□ -0.39
USP38-201ENST00000307017 HNMTP50135 292 aa12.63□□□□□ -0.39
USP38-201ENST00000307017 ATP13A5Q4VNC0 1218 aa12.63□□□□□ -0.39
USP38-201ENST00000307017 ZNF730Q6ZMV8 503 aa12.63□□□□□ -0.39
USP38-201ENST00000307017 ASB18Q6ZVZ8 466 aa12.63□□□□□ -0.39
USP38-201ENST00000307017 USP45Q70EL2 814 aa12.63□□□□□ -0.39
USP38-201ENST00000307017 ANKRD23Q86SG2 305 aa12.63□□□□□ -0.39
USP38-201ENST00000307017 HIST2H2ABQ8IUE6 130 aaPredicted RBP12.63□□□□□ -0.39
USP38-201ENST00000307017 PLGRKTQ9HBL7 147 aa12.63□□□□□ -0.39
USP38-201ENST00000307017 TCRBV9S1A1TA0A576 114 aa12.63□□□□□ -0.39
USP38-201ENST00000307017 FPGTO14772 594 aa12.63□□□□□ -0.39
USP38-201ENST00000307017 ZNF806P0C7X5 589 aa12.63□□□□□ -0.39
USP38-201ENST00000307017 GZMAP12544 262 aa12.63□□□□□ -0.39
USP38-201ENST00000307017 IFNGR2P38484 337 aa12.63□□□□□ -0.39
USP38-201ENST00000307017 ITGA1P56199 1179 aa12.63□□□□□ -0.39
USP38-201ENST00000307017 IKBIPQ70UQ0 350 aa12.63□□□□□ -0.39
USP38-201ENST00000307017 CCNJLQ8IV13 435 aa12.63□□□□□ -0.39
USP38-201ENST00000307017 ZNF221Q9UK13 617 aa12.63□□□□□ -0.39
USP38-201ENST00000307017 CDC42EP1Q00587 391 aa12.62□□□□□ -0.39
USP38-201ENST00000307017 IRF9Q00978 393 aa12.62□□□□□ -0.39
USP38-201ENST00000307017 SMYD5Q6GMV2 418 aa12.62□□□□□ -0.39
USP38-201ENST00000307017 PLCZ1Q86YW0 608 aa12.62□□□□□ -0.39
USP38-201ENST00000307017 SLC9A9Q8IVB4 645 aa12.62□□□□□ -0.39
USP38-201ENST00000307017 SMG7Q92540 1137 aaKnown RBP12.62□□□□□ -0.39
USP38-201ENST00000307017 SLC38A2Q96QD8 506 aa12.62□□□□□ -0.39
USP38-201ENST00000307017 F9P00740 461 aa12.62□□□□□ -0.39
USP38-201ENST00000307017 CES1P23141 567 aa12.62□□□□□ -0.39
USP38-201ENST00000307017 TARBP2Q15633 366 aaKnown RBP12.62□□□□□ -0.39
USP38-201ENST00000307017 INTS5Q6P9B9 1019 aaKnown RBP12.62□□□□□ -0.39
USP38-201ENST00000307017 METTL7BQ6UX53 244 aa12.62□□□□□ -0.39
USP38-201ENST00000307017 RPS27LQ71UM5 84 aaKnown RBP12.62□□□□□ -0.39
USP38-201ENST00000307017 DAGLBQ8NCG7 672 aa12.62□□□□□ -0.39
USP38-201ENST00000307017 ZCCHC10Q8TBK6 192 aa12.62□□□□□ -0.39
USP38-201ENST00000307017 PCDHB12Q9Y5F1 795 aa12.62□□□□□ -0.39
USP38-201ENST00000307017 ABCA6Q8N139 1617 aa12.62□□□□□ -0.39
USP38-201ENST00000307017 MAGEB16A2A368 324 aa12.62□□□□□ -0.39
USP38-201ENST00000307017 RNF43Q68DV7 783 aa12.62□□□□□ -0.39
USP38-201ENST00000307017 LINGO2Q7L985 606 aa12.62□□□□□ -0.39
USP38-201ENST00000307017 FRMD8P1Q9BZ68 369 aaPredicted RBP12.62□□□□□ -0.39
USP38-201ENST00000307017 AMBNQ9NP70 447 aa12.62□□□□□ -0.39
USP38-201ENST00000307017 NCAM2O15394 837 aa12.62□□□□□ -0.39
USP38-201ENST00000307017 MTHFD1P11586 935 aaKnown RBP12.62□□□□□ -0.39
USP38-201ENST00000307017 DGKAP23743 735 aa12.62□□□□□ -0.39
USP38-201ENST00000307017 ATXN1P54253 815 aaKnown RBP12.62□□□□□ -0.39
USP38-201ENST00000307017 SEC23AQ15436 765 aa12.62□□□□□ -0.39
USP38-201ENST00000307017 FAM91A1Q658Y4 838 aa12.62□□□□□ -0.39
USP38-201ENST00000307017 OR2L3Q8NG85 312 aa12.62□□□□□ -0.39
USP38-201ENST00000307017 CRNNQ9UBG3 495 aaPredicted RBP12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms