RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 GDF10P55107 478 aa12.84□□□□□ -0.35
COL3A1-201ENST00000304636 ACAP2Q15057 778 aa12.84□□□□□ -0.35
COL3A1-201ENST00000304636 BRMS1LQ5PSV4 323 aa12.84□□□□□ -0.35
COL3A1-201ENST00000304636 LDLRAP1Q5SW96 308 aa12.84□□□□□ -0.35
COL3A1-201ENST00000304636 RAP1GAP2Q684P5 730 aa12.84□□□□□ -0.35
COL3A1-201ENST00000304636 KLHDC10Q6PID8 442 aa12.84□□□□□ -0.35
COL3A1-201ENST00000304636 USP45Q70EL2 814 aa12.84□□□□□ -0.35
COL3A1-201ENST00000304636 P2RY8Q86VZ1 359 aa12.84□□□□□ -0.35
COL3A1-201ENST00000304636 PGLYRP2Q96PD5 576 aa12.84□□□□□ -0.35
COL3A1-201ENST00000304636 NODALQ96S42 347 aa12.84□□□□□ -0.35
COL3A1-201ENST00000304636 EBF4Q9BQW3 602 aa12.84□□□□□ -0.35
COL3A1-201ENST00000304636 SPATA5L1Q9BVQ7 753 aa12.84□□□□□ -0.35
COL3A1-201ENST00000304636 C1orf21Q9H246 121 aa12.84□□□□□ -0.35
COL3A1-201ENST00000304636 ZNF222Q9UK12 451 aa12.84□□□□□ -0.35
COL3A1-201ENST00000304636 AJAP1Q9UKB5 411 aaPredicted RBP12.84□□□□□ -0.35
COL3A1-201ENST00000304636 TCHHQ07283 1943 aa12.84□□□□□ -0.35
COL3A1-201ENST00000304636 SH3BGRLO75368 114 aa12.84□□□□□ -0.35
COL3A1-201ENST00000304636 OR6B1O95007 311 aa12.84□□□□□ -0.35
COL3A1-201ENST00000304636 ADRA1BP35368 520 aa12.84□□□□□ -0.35
COL3A1-201ENST00000304636 ANXA8L1Q5VT79 327 aa12.84□□□□□ -0.35
COL3A1-201ENST00000304636 FAM180AQ6UWF9 173 aa12.84□□□□□ -0.35
COL3A1-201ENST00000304636 CATSPERGQ6ZRH7 1159 aa12.84□□□□□ -0.35
COL3A1-201ENST00000304636 RAB43Q86YS6 212 aa12.84□□□□□ -0.35
COL3A1-201ENST00000304636 DCAKDQ8WVC6 231 aa12.84□□□□□ -0.35
COL3A1-201ENST00000304636 USP7Q93009 1102 aa12.84□□□□□ -0.35
COL3A1-201ENST00000304636 KLHL32Q96NJ5 620 aa12.84□□□□□ -0.35
COL3A1-201ENST00000304636 ABHD16BQ9H3Z7 469 aa12.84□□□□□ -0.35
COL3A1-201ENST00000304636 FAM124BQ9H5Z6 455 aaPredicted RBP12.84□□□□□ -0.35
COL3A1-201ENST00000304636 MOV10Q9HCE1 1003 aaKnown RBP12.84□□□□□ -0.35
COL3A1-201ENST00000304636 EIF2B3Q9NR50 452 aaKnown RBP12.84□□□□□ -0.35
COL3A1-201ENST00000304636 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP12.84□□□□□ -0.35
COL3A1-201ENST00000304636 CCDC162PA2VCL2 907 aa12.84□□□□□ -0.35
COL3A1-201ENST00000304636 KLF11O14901 512 aa12.84□□□□□ -0.35
COL3A1-201ENST00000304636 LSM1O15116 133 aaKnown RBP12.84□□□□□ -0.35
COL3A1-201ENST00000304636 SSNA1O43805 119 aa12.84□□□□□ -0.35
COL3A1-201ENST00000304636 ATP6V1G1O75348 118 aa12.84□□□□□ -0.35
COL3A1-201ENST00000304636 ANGPTL1O95841 491 aa12.84□□□□□ -0.35
COL3A1-201ENST00000304636 ABL2P42684 1182 aa12.84□□□□□ -0.35
COL3A1-201ENST00000304636 POLR2LP62875 67 aaKnown RBP12.84□□□□□ -0.35
COL3A1-201ENST00000304636 INTS6LQ5JSJ4 861 aaKnown RBP12.84□□□□□ -0.35
COL3A1-201ENST00000304636 BICRALQ6AI39 1079 aa12.84□□□□□ -0.35
COL3A1-201ENST00000304636 PTCHD4Q6ZW05 846 aa12.84□□□□□ -0.35
COL3A1-201ENST00000304636 LRP10Q7Z4F1 713 aa12.84□□□□□ -0.35
COL3A1-201ENST00000304636 IZUMO1Q8IYV9 350 aa12.84□□□□□ -0.35
COL3A1-201ENST00000304636 SVOPLQ8N434 492 aa12.84□□□□□ -0.35
COL3A1-201ENST00000304636 TOP6BLQ8N6T0 577 aa12.84□□□□□ -0.35
COL3A1-201ENST00000304636 NETO2Q8NC67 525 aa12.84□□□□□ -0.35
COL3A1-201ENST00000304636 BSNDQ8WZ55 320 aa12.84□□□□□ -0.35
COL3A1-201ENST00000304636 PTGFRNQ9P2B2 879 aa12.84□□□□□ -0.35
COL3A1-201ENST00000304636 U3KQV3 271 aa12.84□□□□□ -0.35
COL3A1-201ENST00000304636 CST3P01034 146 aaPredicted RBP12.84□□□□□ -0.35
COL3A1-201ENST00000304636 FYNP06241 537 aa12.84□□□□□ -0.35
COL3A1-201ENST00000304636 HPGDP15428 266 aa12.84□□□□□ -0.35
COL3A1-201ENST00000304636 ZNF157P51786 506 aaPredicted RBP12.84□□□□□ -0.35
COL3A1-201ENST00000304636 HERC3Q15034 1050 aa12.84□□□□□ -0.35
COL3A1-201ENST00000304636 FAM131AQ6UXB0 335 aa12.84□□□□□ -0.35
COL3A1-201ENST00000304636 ITIH5Q86UX2 942 aa12.84□□□□□ -0.35
COL3A1-201ENST00000304636 NKX2-3Q8TAU0 364 aa12.84□□□□□ -0.35
COL3A1-201ENST00000304636 ANKRD49Q8WVL7 239 aa12.84□□□□□ -0.35
COL3A1-201ENST00000304636 PDE10AQ9Y233 779 aa12.84□□□□□ -0.35
COL3A1-201ENST00000304636 RPN2P04844 631 aa12.84□□□□□ -0.35
COL3A1-201ENST00000304636 PTPN9P43378 593 aa12.84□□□□□ -0.35
COL3A1-201ENST00000304636 NADK2Q4G0N4 442 aa12.84□□□□□ -0.35
COL3A1-201ENST00000304636 ABHD15Q6UXT9 468 aa12.84□□□□□ -0.35
COL3A1-201ENST00000304636 TRIM74Q86UV6 250 aa12.84□□□□□ -0.35
COL3A1-201ENST00000304636 TRIM73Q86UV7 250 aa12.84□□□□□ -0.35
COL3A1-201ENST00000304636 PHACTR4Q8IZ21 702 aa12.84□□□□□ -0.35
COL3A1-201ENST00000304636 ENDOVQ8N8Q3 282 aaKnown RBP12.84□□□□□ -0.35
COL3A1-201ENST00000304636 NAT8LQ8N9F0 302 aa12.84□□□□□ -0.35
COL3A1-201ENST00000304636 MINDY2Q8NBR6 621 aa12.84□□□□□ -0.35
COL3A1-201ENST00000304636 CERKQ8TCT0 537 aa12.84□□□□□ -0.35
COL3A1-201ENST00000304636 NARS2Q96I59 477 aaKnown RBP12.84□□□□□ -0.35
COL3A1-201ENST00000304636 PPM1MQ96MI6 270 aa12.84□□□□□ -0.35
COL3A1-201ENST00000304636 GAD1Q99259 594 aa12.84□□□□□ -0.35
COL3A1-201ENST00000304636 B3GNT5Q9BYG0 378 aa12.84□□□□□ -0.35
COL3A1-201ENST00000304636 COQ4Q9Y3A0 265 aa12.84□□□□□ -0.35
COL3A1-201ENST00000304636 E7ENX8 843 aa12.83□□□□□ -0.36
COL3A1-201ENST00000304636 NR2F6P10588 404 aa12.83□□□□□ -0.36
COL3A1-201ENST00000304636 CES1P23141 567 aa12.83□□□□□ -0.36
COL3A1-201ENST00000304636 MAXP61244 160 aa12.83□□□□□ -0.36
COL3A1-201ENST00000304636 ECT2LQ008S8 904 aa12.83□□□□□ -0.36
COL3A1-201ENST00000304636 HSPA14Q0VDF9 509 aa12.83□□□□□ -0.36
COL3A1-201ENST00000304636 SEMA5AQ13591 1074 aa12.83□□□□□ -0.36
COL3A1-201ENST00000304636 FAM117BQ6P1L5 589 aa12.83□□□□□ -0.36
COL3A1-201ENST00000304636 DNAJC1Q96KC8 554 aaKnown RBP12.83□□□□□ -0.36
COL3A1-201ENST00000304636 PCDH12Q9NPG4 1184 aa12.83□□□□□ -0.36
COL3A1-201ENST00000304636 UXTQ9UBK9 157 aaPredicted RBP12.83□□□□□ -0.36
COL3A1-201ENST00000304636 GUCY1B2O75343 617 aa12.83□□□□□ -0.36
COL3A1-201ENST00000304636 TSPAN9O75954 239 aa12.83□□□□□ -0.36
COL3A1-201ENST00000304636 ELP6Q0PNE2 266 aa12.83□□□□□ -0.36
COL3A1-201ENST00000304636 FAM171A1Q5VUB5 890 aa12.83□□□□□ -0.36
COL3A1-201ENST00000304636 ERICH5Q6P6B1 374 aa12.83□□□□□ -0.36
COL3A1-201ENST00000304636 TRIM40Q6P9F5 258 aa12.83□□□□□ -0.36
COL3A1-201ENST00000304636 GATAD2AQ86YP4 633 aa12.83□□□□□ -0.36
COL3A1-201ENST00000304636 SIX5Q8N196 739 aa12.83□□□□□ -0.36
COL3A1-201ENST00000304636 GPATCH1Q9BRR8 931 aaKnown RBP12.83□□□□□ -0.36
COL3A1-201ENST00000304636 CD320Q9NPF0 282 aa12.83□□□□□ -0.36
COL3A1-201ENST00000304636 TRPV2Q9Y5S1 764 aa12.83□□□□□ -0.36
COL3A1-201ENST00000304636 ELOVL7A1L3X0 281 aa12.83□□□□□ -0.36
COL3A1-201ENST00000304636 SLC7A1P30825 629 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms