RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 PSTKQ8IV42 348 aaKnown RBP14.76□□□□□ -0.05
CCDC88B-201ENST00000301897 CACNA2D3Q8IZS8 1091 aa14.76□□□□□ -0.05
CCDC88B-201ENST00000301897 RCBTB1Q8NDN9 531 aa14.76□□□□□ -0.05
CCDC88B-201ENST00000301897 ANKRD20A12PQ8NF67 263 aa14.76□□□□□ -0.05
CCDC88B-201ENST00000301897 ART4Q93070 314 aa14.76□□□□□ -0.05
CCDC88B-201ENST00000301897 AGPAT1Q99943 283 aa14.76□□□□□ -0.05
CCDC88B-201ENST00000301897 DHX35Q9H5Z1 703 aaKnown RBP14.76□□□□□ -0.05
CCDC88B-201ENST00000301897 SLC39A1Q9NY26 324 aa14.76□□□□□ -0.05
CCDC88B-201ENST00000301897 ANAPC2Q9UJX6 822 aa14.76□□□□□ -0.05
CCDC88B-201ENST00000301897 SUFUQ9UMX1 484 aa14.76□□□□□ -0.05
CCDC88B-201ENST00000301897 SIK3Q9Y2K2 1263 aa14.76□□□□□ -0.05
CCDC88B-201ENST00000301897 SPTBN1Q01082 2364 aaKnown RBP14.76□□□□□ -0.05
CCDC88B-201ENST00000301897 IGHV1OR21-1A0A087WYE8 117 aa14.75□□□□□ -0.05
CCDC88B-201ENST00000301897 EPHB6O15197 1021 aa14.75□□□□□ -0.05
CCDC88B-201ENST00000301897 HEXIM1O94992 359 aaKnown RBP14.75□□□□□ -0.05
CCDC88B-201ENST00000301897 THRAP10827 490 aa14.75□□□□□ -0.05
CCDC88B-201ENST00000301897 ERCC2P18074 760 aa14.75□□□□□ -0.05
CCDC88B-201ENST00000301897 UGT1A3P35503 534 aa14.75□□□□□ -0.05
CCDC88B-201ENST00000301897 HCAR3P49019 387 aa14.75□□□□□ -0.05
CCDC88B-201ENST00000301897 CDK3Q00526 305 aa14.75□□□□□ -0.05
CCDC88B-201ENST00000301897 ZNF235Q14590 738 aa14.75□□□□□ -0.05
CCDC88B-201ENST00000301897 LBRQ14739 615 aaKnown RBP14.75□□□□□ -0.05
CCDC88B-201ENST00000301897 CNGA3Q16281 694 aa14.75□□□□□ -0.05
CCDC88B-201ENST00000301897 RALGPS1Q5JS13 557 aa14.75□□□□□ -0.05
CCDC88B-201ENST00000301897 CDKAL1Q5VV42 579 aa14.75□□□□□ -0.05
CCDC88B-201ENST00000301897 SLC30A9Q6PML9 568 aa14.75□□□□□ -0.05
CCDC88B-201ENST00000301897 ARHGAP12Q8IWW6 846 aa14.75□□□□□ -0.05
CCDC88B-201ENST00000301897 MCOLN2Q8IZK6 566 aa14.75□□□□□ -0.05
CCDC88B-201ENST00000301897 BBS5Q8N3I7 341 aa14.75□□□□□ -0.05
CCDC88B-201ENST00000301897 JPH3Q8WXH2 748 aaPredicted RBP14.75□□□□□ -0.05
CCDC88B-201ENST00000301897 KIAA1143Q96AT1 154 aaPredicted RBP14.75□□□□□ -0.05
CCDC88B-201ENST00000301897 DTD2Q96FN9 168 aa14.75□□□□□ -0.05
CCDC88B-201ENST00000301897 PCMTD1Q96MG8 357 aaPredicted RBP14.75□□□□□ -0.05
CCDC88B-201ENST00000301897 ZPBPQ9BS86 351 aa14.75□□□□□ -0.05
CCDC88B-201ENST00000301897 NUP62CLQ9H1M0 184 aa14.75□□□□□ -0.05
CCDC88B-201ENST00000301897 SUDS3Q9H7L9 328 aaPredicted RBP14.75□□□□□ -0.05
CCDC88B-201ENST00000301897 PARVAQ9NVD7 372 aa14.75□□□□□ -0.05
CCDC88B-201ENST00000301897 KCNK4Q9NYG8 393 aa14.75□□□□□ -0.05
CCDC88B-201ENST00000301897 PHTF1Q9UMS5 762 aa14.75□□□□□ -0.05
CCDC88B-201ENST00000301897 SLC17A4Q9Y2C5 497 aa14.75□□□□□ -0.05
CCDC88B-201ENST00000301897 B3GALT1Q9Y5Z6 326 aa14.75□□□□□ -0.05
CCDC88B-201ENST00000301897 A8MX80 341 aa14.74□□□□□ -0.05
CCDC88B-201ENST00000301897 RNF8O76064 485 aa14.74□□□□□ -0.05
CCDC88B-201ENST00000301897 CPP00450 1065 aa14.74□□□□□ -0.05
CCDC88B-201ENST00000301897 PYGLP06737 847 aa14.74□□□□□ -0.05
CCDC88B-201ENST00000301897 LIFP15018 202 aa14.74□□□□□ -0.05
CCDC88B-201ENST00000301897 PSMA2P25787 234 aa14.74□□□□□ -0.05
CCDC88B-201ENST00000301897 ADCY8P40145 1251 aa14.74□□□□□ -0.05
CCDC88B-201ENST00000301897 CASRP41180 1078 aa14.74□□□□□ -0.05
CCDC88B-201ENST00000301897 CTBSQ01459 385 aa14.74□□□□□ -0.05
CCDC88B-201ENST00000301897 RAET1GQ6H3X3 334 aa14.74□□□□□ -0.05
CCDC88B-201ENST00000301897 ACAD10Q6JQN1 1059 aa14.74□□□□□ -0.05
CCDC88B-201ENST00000301897 TMEM71Q6P5X7 295 aa14.74□□□□□ -0.05
CCDC88B-201ENST00000301897 NAGSQ8N159 534 aa14.74□□□□□ -0.05
CCDC88B-201ENST00000301897 PELI3Q8N2H9 469 aa14.74□□□□□ -0.05
CCDC88B-201ENST00000301897 SCARF2Q96GP6 870 aaPredicted RBP14.74□□□□□ -0.05
CCDC88B-201ENST00000301897 AHCYL2Q96HN2 611 aaKnown RBP14.74□□□□□ -0.05
CCDC88B-201ENST00000301897 SLC45A3Q96JT2 553 aa14.74□□□□□ -0.05
CCDC88B-201ENST00000301897 ZMYND15Q9H091 742 aa14.74□□□□□ -0.05
CCDC88B-201ENST00000301897 GPATCH2LQ9NWQ4 482 aa14.74□□□□□ -0.05
CCDC88B-201ENST00000301897 ANKMY1Q9P2S6 941 aa14.74□□□□□ -0.05
CCDC88B-201ENST00000301897 TEX15Q9BXT5 2789 aa14.74□□□□□ -0.05
CCDC88B-201ENST00000301897 ZFC3H1O60293 1989 aaKnown RBP14.74□□□□□ -0.05
CCDC88B-201ENST00000301897 USP9XQ93008 2570 aaPredicted RBP14.73□□□□□ -0.05
CCDC88B-201ENST00000301897 GOLGA6CA6NDK9 693 aa14.73□□□□□ -0.05
CCDC88B-201ENST00000301897 GOLGA6BA6NDN3 693 aa14.73□□□□□ -0.05
CCDC88B-201ENST00000301897 PPM1DO15297 605 aa14.73□□□□□ -0.05
CCDC88B-201ENST00000301897 PRPSAP2O60256 369 aa14.73□□□□□ -0.05
CCDC88B-201ENST00000301897 RAD1O60671 282 aa14.73□□□□□ -0.05
CCDC88B-201ENST00000301897 GOLGA6DP0CG33 693 aa14.73□□□□□ -0.05
CCDC88B-201ENST00000301897 ATP1A3P13637 1013 aa14.73□□□□□ -0.05
CCDC88B-201ENST00000301897 AK4P27144 223 aaPredicted RBP14.73□□□□□ -0.05
CCDC88B-201ENST00000301897 MAP4P27816 1152 aaKnown RBP14.73□□□□□ -0.05
CCDC88B-201ENST00000301897 ETV3P41162 512 aa14.73□□□□□ -0.05
CCDC88B-201ENST00000301897 ACTR1BP42025 376 aa14.73□□□□□ -0.05
CCDC88B-201ENST00000301897 FASLGP48023 281 aa14.73□□□□□ -0.05
CCDC88B-201ENST00000301897 ARSDP51689 593 aa14.73□□□□□ -0.05
CCDC88B-201ENST00000301897 ACTR1AP61163 376 aa14.73□□□□□ -0.05
CCDC88B-201ENST00000301897 MC1RQ01726 317 aa14.73□□□□□ -0.05
CCDC88B-201ENST00000301897 DPTQ07507 201 aa14.73□□□□□ -0.05
CCDC88B-201ENST00000301897 LRP8Q14114 963 aa14.73□□□□□ -0.05
CCDC88B-201ENST00000301897 UBAP2LQ14157 1087 aaKnown RBP14.73□□□□□ -0.05
CCDC88B-201ENST00000301897 USP45Q70EL2 814 aa14.73□□□□□ -0.05
CCDC88B-201ENST00000301897 FAM129CQ86XR2 697 aa14.73□□□□□ -0.05
CCDC88B-201ENST00000301897 NDUFAF2Q8N183 169 aa14.73□□□□□ -0.05
CCDC88B-201ENST00000301897 CBARPQ8N350 705 aaPredicted RBP14.73□□□□□ -0.05
CCDC88B-201ENST00000301897 OR10G6Q8NH81 332 aa14.73□□□□□ -0.05
CCDC88B-201ENST00000301897 PDCD6IPQ8WUM4 868 aaKnown RBP14.73□□□□□ -0.05
CCDC88B-201ENST00000301897 SCRN2Q96FV2 425 aa14.73□□□□□ -0.05
CCDC88B-201ENST00000301897 OR2M4Q96R27 311 aa14.73□□□□□ -0.05
CCDC88B-201ENST00000301897 NUDCD1Q96RS6 583 aa14.73□□□□□ -0.05
CCDC88B-201ENST00000301897 SNRNP25Q9BV90 132 aaKnown RBP14.73□□□□□ -0.05
CCDC88B-201ENST00000301897 TRIT1Q9H3H1 467 aaKnown RBP14.73□□□□□ -0.05
CCDC88B-201ENST00000301897 ZWILCHQ9H900 591 aa14.73□□□□□ -0.05
CCDC88B-201ENST00000301897 GOLGA6AQ9NYA3 693 aa14.73□□□□□ -0.05
CCDC88B-201ENST00000301897 PDP2Q9P2J9 529 aa14.73□□□□□ -0.05
CCDC88B-201ENST00000301897 NOTCH2Q04721 2471 aa14.72□□□□□ -0.05
CCDC88B-201ENST00000301897 EFCAB7A8K855 629 aa14.72□□□□□ -0.05
CCDC88B-201ENST00000301897 DUX1O43812 170 aa14.72□□□□□ -0.05
CCDC88B-201ENST00000301897 FUCA1P04066 466 aa14.72□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms