RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 DNAJB14Q8TBM8 379 aa9.87□□□□□ -0.83
COL6A3-201ENST00000295550 EZH1Q92800 747 aaPredicted RBP9.87□□□□□ -0.83
COL6A3-201ENST00000295550 LEF1Q9UJU2 399 aaPredicted RBP9.87□□□□□ -0.83
COL6A3-201ENST00000295550 G3V2T6 193 aa9.87□□□□□ -0.83
COL6A3-201ENST00000295550 UPP2O95045 317 aa9.87□□□□□ -0.83
COL6A3-201ENST00000295550 SERPINF2P08697 491 aa9.87□□□□□ -0.83
COL6A3-201ENST00000295550 RAB27AP51159 221 aa9.87□□□□□ -0.83
COL6A3-201ENST00000295550 ALDH3A2P51648 485 aa9.87□□□□□ -0.83
COL6A3-201ENST00000295550 RASSF5Q8WWW0 418 aa9.87□□□□□ -0.83
COL6A3-201ENST00000295550 MGAT4AQ9UM21 535 aa9.87□□□□□ -0.83
COL6A3-201ENST00000295550 ZBTB11O95625 1053 aaPredicted RBP9.87□□□□□ -0.83
COL6A3-201ENST00000295550 NPNTQ6UXI9 565 aa9.87□□□□□ -0.83
COL6A3-201ENST00000295550 PTCHD4Q6ZW05 846 aa9.87□□□□□ -0.83
COL6A3-201ENST00000295550 ATL1Q8WXF7 558 aa9.87□□□□□ -0.83
COL6A3-201ENST00000295550 RFT1Q96AA3 541 aa9.87□□□□□ -0.83
COL6A3-201ENST00000295550 PHF12Q96QT6 1004 aa9.87□□□□□ -0.83
COL6A3-201ENST00000295550 NEK6Q9HC98 313 aa9.87□□□□□ -0.83
COL6A3-201ENST00000295550 SEMA4BQ9NPR2 832 aaPredicted RBP9.87□□□□□ -0.83
COL6A3-201ENST00000295550 ARL15Q9NXU5 204 aa9.87□□□□□ -0.83
COL6A3-201ENST00000295550 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP9.87□□□□□ -0.83
COL6A3-201ENST00000295550 A0A088AWK7 358 aa9.87□□□□□ -0.83
COL6A3-201ENST00000295550 CASKO14936 926 aa9.87□□□□□ -0.83
COL6A3-201ENST00000295550 PRH1P02810 166 aa9.87□□□□□ -0.83
COL6A3-201ENST00000295550 CLUP10909 449 aa9.87□□□□□ -0.83
COL6A3-201ENST00000295550 ZNF10P21506 573 aaPredicted RBP9.87□□□□□ -0.83
COL6A3-201ENST00000295550 IST1P53990 364 aa9.87□□□□□ -0.83
COL6A3-201ENST00000295550 AMIGO2Q86SJ2 522 aa9.87□□□□□ -0.83
COL6A3-201ENST00000295550 PDPRQ8NCN5 879 aa9.87□□□□□ -0.83
COL6A3-201ENST00000295550 LPCAT1Q8NF37 534 aa9.87□□□□□ -0.83
COL6A3-201ENST00000295550 FNDC11Q9BVV2 318 aa9.87□□□□□ -0.83
COL6A3-201ENST00000295550 TRIM2Q9C040 744 aa9.87□□□□□ -0.83
COL6A3-201ENST00000295550 TGDSO95455 350 aa9.86□□□□□ -0.83
COL6A3-201ENST00000295550 CST1P01037 141 aa9.86□□□□□ -0.83
COL6A3-201ENST00000295550 IFNA6P05013 189 aa9.86□□□□□ -0.83
COL6A3-201ENST00000295550 TPH1P17752 444 aa9.86□□□□□ -0.83
COL6A3-201ENST00000295550 SCN1BQ07699 218 aa9.86□□□□□ -0.83
COL6A3-201ENST00000295550 RGS1Q08116 209 aa9.86□□□□□ -0.83
COL6A3-201ENST00000295550 TMEM132BQ14DG7 1078 aa9.86□□□□□ -0.83
COL6A3-201ENST00000295550 OVOS1Q6IE37 1185 aa9.86□□□□□ -0.83
COL6A3-201ENST00000295550 NKX2-3Q8TAU0 364 aa9.86□□□□□ -0.83
COL6A3-201ENST00000295550 NKD2Q969F2 451 aaPredicted RBP9.86□□□□□ -0.83
COL6A3-201ENST00000295550 CCL15-CCL14A0A0B4J2E2 113 aa9.86□□□□□ -0.83
COL6A3-201ENST00000295550 TNNI3P19429 210 aa9.86□□□□□ -0.83
COL6A3-201ENST00000295550 CCL15Q16663 113 aa9.86□□□□□ -0.83
COL6A3-201ENST00000295550 CXorf57Q6NSI4 855 aaKnown RBP9.86□□□□□ -0.83
COL6A3-201ENST00000295550 FAM171BQ6P995 826 aa9.86□□□□□ -0.83
COL6A3-201ENST00000295550 LZTR1Q8N653 840 aa9.86□□□□□ -0.83
COL6A3-201ENST00000295550 SCAIQ8N9R8 606 aa9.86□□□□□ -0.83
COL6A3-201ENST00000295550 C7orf26Q96N11 449 aa9.86□□□□□ -0.83
COL6A3-201ENST00000295550 FCRL4Q96PJ5 515 aa9.86□□□□□ -0.83
COL6A3-201ENST00000295550 TOR3AQ9H497 397 aa9.86□□□□□ -0.83
COL6A3-201ENST00000295550 FGFR1P11362 822 aa9.86□□□□□ -0.83
COL6A3-201ENST00000295550 MAGEA12P43365 314 aa9.86□□□□□ -0.83
COL6A3-201ENST00000295550 TAS2R41P59536 307 aa9.86□□□□□ -0.83
COL6A3-201ENST00000295550 C6orf52Q5T4I8 152 aa9.86□□□□□ -0.83
COL6A3-201ENST00000295550 DENND6BQ8NEG7 585 aa9.86□□□□□ -0.83
COL6A3-201ENST00000295550 C11orf24Q96F05 449 aaPredicted RBP9.86□□□□□ -0.83
COL6A3-201ENST00000295550 MRPL57Q9BQC6 102 aaKnown RBP9.86□□□□□ -0.83
COL6A3-201ENST00000295550 MARCH7Q9H992 704 aa9.86□□□□□ -0.83
COL6A3-201ENST00000295550 IGLV3-22A0A075B6J6 115 aa9.86□□□□□ -0.83
COL6A3-201ENST00000295550 RGSL1A5PLK6 1076 aa9.86□□□□□ -0.83
COL6A3-201ENST00000295550 PLK4O00444 970 aa9.86□□□□□ -0.83
COL6A3-201ENST00000295550 OR10H3O60404 316 aa9.86□□□□□ -0.83
COL6A3-201ENST00000295550 ATP6V1G1O75348 118 aa9.86□□□□□ -0.83
COL6A3-201ENST00000295550 THP07101 528 aa9.86□□□□□ -0.83
COL6A3-201ENST00000295550 ALDH7A1P49419 539 aaKnown RBP9.86□□□□□ -0.83
COL6A3-201ENST00000295550 NBPF12Q5TAG4 269 aaPredicted RBP9.86□□□□□ -0.83
COL6A3-201ENST00000295550 ALYREFQ86V81 257 aaKnown RBP9.86□□□□□ -0.83
COL6A3-201ENST00000295550 SLC44A1Q8WWI5 657 aa9.86□□□□□ -0.83
COL6A3-201ENST00000295550 SENP6Q9GZR1 1112 aaPredicted RBP9.86□□□□□ -0.83
COL6A3-201ENST00000295550 MOV10Q9HCE1 1003 aaKnown RBP9.86□□□□□ -0.83
COL6A3-201ENST00000295550 PLLPQ9Y342 182 aa9.86□□□□□ -0.83
COL6A3-201ENST00000295550 SPEF1Q9Y4P9 236 aa9.86□□□□□ -0.83
COL6A3-201ENST00000295550 MAGP20916 626 aa9.86□□□□□ -0.83
COL6A3-201ENST00000295550 PSMB4P28070 264 aa9.86□□□□□ -0.83
COL6A3-201ENST00000295550 CXCL9Q07325 125 aa9.86□□□□□ -0.83
COL6A3-201ENST00000295550 TRMT11Q7Z4G4 463 aaKnown RBP9.86□□□□□ -0.83
COL6A3-201ENST00000295550 PIGWQ7Z7B1 504 aa9.86□□□□□ -0.83
COL6A3-201ENST00000295550 PTCD2Q8WV60 388 aaKnown RBP9.86□□□□□ -0.83
COL6A3-201ENST00000295550 SYT15Q9BQS2 421 aa9.86□□□□□ -0.83
COL6A3-201ENST00000295550 SPATA5L1Q9BVQ7 753 aa9.86□□□□□ -0.83
COL6A3-201ENST00000295550 NOL11Q9H8H0 719 aaKnown RBP9.86□□□□□ -0.83
COL6A3-201ENST00000295550 RASSF1Q9NS23 344 aa9.86□□□□□ -0.83
COL6A3-201ENST00000295550 CDKN2BP42772 138 aa9.86□□□□□ -0.83
COL6A3-201ENST00000295550 ACOX1Q15067 660 aa9.86□□□□□ -0.83
COL6A3-201ENST00000295550 ECHDC2Q86YB7 292 aa9.86□□□□□ -0.83
COL6A3-201ENST00000295550 CERS2Q96G23 380 aa9.86□□□□□ -0.83
COL6A3-201ENST00000295550 ERMAPQ96PL5 475 aaPredicted RBP9.86□□□□□ -0.83
COL6A3-201ENST00000295550 RNF157Q96PX1 679 aa9.86□□□□□ -0.83
COL6A3-201ENST00000295550 USP20Q9Y2K6 914 aa9.86□□□□□ -0.83
COL6A3-201ENST00000295550 MCIDASD6RGH6 385 aa9.86□□□□□ -0.83
COL6A3-201ENST00000295550 SNX4O95219 450 aa9.86□□□□□ -0.83
COL6A3-201ENST00000295550 AMPD1P23109 780 aa9.86□□□□□ -0.83
COL6A3-201ENST00000295550 TUBA1BP68363 451 aa9.86□□□□□ -0.83
COL6A3-201ENST00000295550 ITGA7Q13683 1181 aa9.86□□□□□ -0.83
COL6A3-201ENST00000295550 TUBA1AQ71U36 451 aa9.86□□□□□ -0.83
COL6A3-201ENST00000295550 PLPPR4Q7Z2D5 763 aa9.86□□□□□ -0.83
COL6A3-201ENST00000295550 NEK7Q8TDX7 302 aa9.86□□□□□ -0.83
COL6A3-201ENST00000295550 DMRTB1Q96MA1 342 aa9.86□□□□□ -0.83
COL6A3-201ENST00000295550 CHMP1AQ9HD42 196 aaPredicted RBP9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms