RNA–Protein interactions for RNA: ENST00000263187.3

MSH4-201, Transcript of mutS homolog 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH4, Length 3,266 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4-201ENST00000263187 TMEM259Q4ZIN3 620 aa9.12□□□□□ -0.95
MSH4-201ENST00000263187 INTS6LQ5JSJ4 861 aaKnown RBP9.12□□□□□ -0.95
MSH4-201ENST00000263187 SAMD4BQ5PRF9 694 aaKnown RBP9.12□□□□□ -0.95
MSH4-201ENST00000263187 KIAA0930Q6ICG6 404 aaPredicted RBP9.12□□□□□ -0.95
MSH4-201ENST00000263187 FIBCD1Q8N539 461 aa9.12□□□□□ -0.95
MSH4-201ENST00000263187 IGSF8Q969P0 613 aa9.12□□□□□ -0.95
MSH4-201ENST00000263187 PGAP3Q96FM1 320 aaPredicted RBP9.12□□□□□ -0.95
MSH4-201ENST00000263187 VPS50Q96JG6 964 aa9.12□□□□□ -0.95
MSH4-201ENST00000263187 RANBP9Q96S59 729 aa9.12□□□□□ -0.95
MSH4-201ENST00000263187 NAA50Q9GZZ1 169 aaKnown RBP9.12□□□□□ -0.95
MSH4-201ENST00000263187 TUBB1Q9H4B7 451 aa9.12□□□□□ -0.95
MSH4-201ENST00000263187 RRAGCQ9HB90 399 aa9.12□□□□□ -0.95
MSH4-201ENST00000263187 BPIFA1Q9NP55 256 aa9.12□□□□□ -0.95
MSH4-201ENST00000263187 DUS2Q9NX74 493 aaKnown RBP9.12□□□□□ -0.95
MSH4-201ENST00000263187 SUCOQ9UBS9 1254 aaKnown RBP9.12□□□□□ -0.95
MSH4-201ENST00000263187 CCDC162PA2VCL2 907 aa9.12□□□□□ -0.95
MSH4-201ENST00000263187 MUSKO15146 869 aa9.12□□□□□ -0.95
MSH4-201ENST00000263187 PIM1P11309 404 aaPredicted RBP9.12□□□□□ -0.95
MSH4-201ENST00000263187 ODC1P11926 461 aa9.12□□□□□ -0.95
MSH4-201ENST00000263187 IMPDH1P20839 514 aa9.12□□□□□ -0.95
MSH4-201ENST00000263187 EEF1DP29692 281 aaKnown RBP9.12□□□□□ -0.95
MSH4-201ENST00000263187 SLC7A1P30825 629 aa9.12□□□□□ -0.95
MSH4-201ENST00000263187 GGT5P36269 586 aa9.12□□□□□ -0.95
MSH4-201ENST00000263187 AIF1P55008 147 aa9.12□□□□□ -0.95
MSH4-201ENST00000263187 ADARP55265 1226 aaKnown RBP9.12□□□□□ -0.95
MSH4-201ENST00000263187 ADAM17P78536 824 aa9.12□□□□□ -0.95
MSH4-201ENST00000263187 YWHAHQ04917 246 aaPredicted RBP9.12□□□□□ -0.95
MSH4-201ENST00000263187 C16orf72Q14CZ0 275 aa9.12□□□□□ -0.95
MSH4-201ENST00000263187 ANKDD1AQ495B1 522 aa9.12□□□□□ -0.95
MSH4-201ENST00000263187 GDF6Q6KF10 455 aaPredicted RBP9.12□□□□□ -0.95
MSH4-201ENST00000263187 LARP4Q71RC2 724 aaKnown RBP eCLIP9.12□□□□□ -0.95
MSH4-201ENST00000263187 LCA5Q86VQ0 697 aa9.12□□□□□ -0.95
MSH4-201ENST00000263187 PGBD5Q8N414 524 aa9.12□□□□□ -0.95
MSH4-201ENST00000263187 ATAD1Q8NBU5 361 aa9.12□□□□□ -0.95
MSH4-201ENST00000263187 KLHDC9Q8NEP7 349 aa9.12□□□□□ -0.95
MSH4-201ENST00000263187 OR2T34Q8NGX1 318 aa9.12□□□□□ -0.95
MSH4-201ENST00000263187 OR2T3Q8NH03 318 aa9.12□□□□□ -0.95
MSH4-201ENST00000263187 ZNF597Q96LX8 424 aa9.12□□□□□ -0.95
MSH4-201ENST00000263187 SPON2Q9BUD6 331 aa9.12□□□□□ -0.95
MSH4-201ENST00000263187 SLC2A11Q9BYW1 496 aa9.12□□□□□ -0.95
MSH4-201ENST00000263187 NMRK2Q9NPI5 230 aa9.12□□□□□ -0.95
MSH4-201ENST00000263187 CMTM6Q9NX76 183 aa9.12□□□□□ -0.95
MSH4-201ENST00000263187 VPS28Q9UK41 221 aa9.12□□□□□ -0.95
MSH4-201ENST00000263187 FAF1Q9UNN5 650 aaPredicted RBP9.12□□□□□ -0.95
MSH4-201ENST00000263187 MYLKQ15746 1914 aa9.12□□□□□ -0.95
MSH4-201ENST00000263187 DHRS12A0PJE2 317 aa9.11□□□□□ -0.95
MSH4-201ENST00000263187 CDC7O00311 574 aa9.11□□□□□ -0.95
MSH4-201ENST00000263187 EI24O14681 340 aa9.11□□□□□ -0.95
MSH4-201ENST00000263187 B4GALT3O60512 393 aa9.11□□□□□ -0.95
MSH4-201ENST00000263187 RBP1P09455 135 aa9.11□□□□□ -0.95
MSH4-201ENST00000263187 GPX3P22352 226 aa9.11□□□□□ -0.95
MSH4-201ENST00000263187 ENTPD1P49961 510 aa9.11□□□□□ -0.95
MSH4-201ENST00000263187 KPNA2P52292 529 aaKnown RBP9.11□□□□□ -0.95
MSH4-201ENST00000263187 CTBSQ01459 385 aa9.11□□□□□ -0.95
MSH4-201ENST00000263187 FRG1Q14331 258 aaKnown RBP9.11□□□□□ -0.95
MSH4-201ENST00000263187 RFTN1Q14699 578 aaPredicted RBP9.11□□□□□ -0.95
MSH4-201ENST00000263187 POLD3Q15054 466 aaPredicted RBP9.11□□□□□ -0.95
MSH4-201ENST00000263187 TSNQ15631 228 aaKnown RBP9.11□□□□□ -0.95
MSH4-201ENST00000263187 TIGD2Q4W5G0 525 aa9.11□□□□□ -0.95
MSH4-201ENST00000263187 GPR107Q5VW38 600 aa9.11□□□□□ -0.95
MSH4-201ENST00000263187 KDELC1Q6UW63 502 aa9.11□□□□□ -0.95
MSH4-201ENST00000263187 EPHX4Q8IUS5 362 aa9.11□□□□□ -0.95
MSH4-201ENST00000263187 SLC15A3Q8IY34 581 aa9.11□□□□□ -0.95
MSH4-201ENST00000263187 CMTR2Q8IYT2 770 aaKnown RBP9.11□□□□□ -0.95
MSH4-201ENST00000263187 RTL3Q8N8U3 475 aaKnown RBP9.11□□□□□ -0.95
MSH4-201ENST00000263187 DRAXINQ8NBI3 349 aaPredicted RBP9.11□□□□□ -0.95
MSH4-201ENST00000263187 RPRD1AQ96P16 312 aaPredicted RBP9.11□□□□□ -0.95
MSH4-201ENST00000263187 SLC38A7Q9NVC3 462 aa9.11□□□□□ -0.95
MSH4-201ENST00000263187 LMCD1Q9NZU5 365 aa9.11□□□□□ -0.95
MSH4-201ENST00000263187 NDUFA13Q9P0J0 144 aa9.11□□□□□ -0.95
MSH4-201ENST00000263187 TMEM181Q9P2C4 612 aa9.11□□□□□ -0.95
MSH4-201ENST00000263187 CD300AQ9UGN4 299 aa9.11□□□□□ -0.95
MSH4-201ENST00000263187 RAD54BQ9Y620 910 aa9.11□□□□□ -0.95
MSH4-201ENST00000263187 PTCH2Q9Y6C5 1203 aa9.11□□□□□ -0.95
MSH4-201ENST00000263187 PRRC2BQ5JSZ5 2229 aaKnown RBP9.11□□□□□ -0.95
MSH4-201ENST00000263187 A0A0J9YVX5 310 aa9.11□□□□□ -0.95
MSH4-201ENST00000263187 H3BNH8 94 aa9.11□□□□□ -0.95
MSH4-201ENST00000263187 PSMD3O43242 534 aa9.11□□□□□ -0.95
MSH4-201ENST00000263187 CLASP2O75122 1294 aaKnown RBP9.11□□□□□ -0.95
MSH4-201ENST00000263187 C8BP07358 591 aa9.11□□□□□ -0.95
MSH4-201ENST00000263187 SLC2A3P11169 496 aa9.11□□□□□ -0.95
MSH4-201ENST00000263187 EEF1B2P24534 225 aaKnown RBP9.11□□□□□ -0.95
MSH4-201ENST00000263187 MRPS6P82932 125 aaKnown RBP9.11□□□□□ -0.95
MSH4-201ENST00000263187 CDC42EP1Q00587 391 aa9.11□□□□□ -0.95
MSH4-201ENST00000263187 NFYCQ13952 458 aa9.11□□□□□ -0.95
MSH4-201ENST00000263187 ACAP2Q15057 778 aa9.11□□□□□ -0.95
MSH4-201ENST00000263187 MAPRE2Q15555 327 aa9.11□□□□□ -0.95
MSH4-201ENST00000263187 C18orf21Q32NC0 220 aaPredicted RBP9.11□□□□□ -0.95
MSH4-201ENST00000263187 UGT3A2Q3SY77 523 aa9.11□□□□□ -0.95
MSH4-201ENST00000263187 UGT3A1Q6NUS8 523 aa9.11□□□□□ -0.95
MSH4-201ENST00000263187 PAQR3Q6TCH7 311 aa9.11□□□□□ -0.95
MSH4-201ENST00000263187 CARM1Q86X55 608 aa9.11□□□□□ -0.95
MSH4-201ENST00000263187 TMEM86AQ8N2M4 240 aa9.11□□□□□ -0.95
MSH4-201ENST00000263187 GAB3Q8WWW8 586 aa9.11□□□□□ -0.95
MSH4-201ENST00000263187 BHMTQ93088 406 aa9.11□□□□□ -0.95
MSH4-201ENST00000263187 TSGA13Q96PP4 275 aa9.11□□□□□ -0.95
MSH4-201ENST00000263187 EFHD1Q9BUP0 239 aa9.11□□□□□ -0.95
MSH4-201ENST00000263187 OSBPL11Q9BXB4 747 aa9.11□□□□□ -0.95
MSH4-201ENST00000263187 GMIPQ9P107 970 aa9.11□□□□□ -0.95
MSH4-201ENST00000263187 NOD1Q9Y239 953 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms