RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 P2RY11Q96G91 374 aa19.13■□□□□ 0.65
UPF1-201ENST00000262803 MIR1-1HGQ9H1L0 117 aa19.13■□□□□ 0.65
UPF1-201ENST00000262803 ITGA7Q13683 1181 aa19.13■□□□□ 0.65
UPF1-201ENST00000262803 TEAD4Q15561 434 aa19.13■□□□□ 0.65
UPF1-201ENST00000262803 CMC1Q7Z7K0 106 aa19.13■□□□□ 0.65
UPF1-201ENST00000262803 AMER2Q8N7J2 671 aa19.13■□□□□ 0.65
UPF1-201ENST00000262803 NETO2Q8NC67 525 aa19.13■□□□□ 0.65
UPF1-201ENST00000262803 PPCDCQ96CD2 204 aa19.13■□□□□ 0.65
UPF1-201ENST00000262803 DGCR6LQ9BY27 220 aa19.13■□□□□ 0.65
UPF1-201ENST00000262803 ZNF624Q9P2J8 865 aaPredicted RBP19.13■□□□□ 0.65
UPF1-201ENST00000262803 ERGIC3Q9Y282 383 aa19.13■□□□□ 0.65
UPF1-201ENST00000262803 ASF1AQ9Y294 204 aa19.13■□□□□ 0.65
UPF1-201ENST00000262803 TRIM43BA6NCK2 446 aa19.13■□□□□ 0.65
UPF1-201ENST00000262803 PAPSS1O43252 624 aaPredicted RBP19.13■□□□□ 0.65
UPF1-201ENST00000262803 MMP3P08254 477 aa19.13■□□□□ 0.65
UPF1-201ENST00000262803 TPSB2P20231 275 aa19.13■□□□□ 0.65
UPF1-201ENST00000262803 TPSAB1Q15661 275 aa19.13■□□□□ 0.65
UPF1-201ENST00000262803 BROXQ5VW32 411 aa19.13■□□□□ 0.65
UPF1-201ENST00000262803 MAGEL2Q9UJ55 1249 aa19.13■□□□□ 0.65
UPF1-201ENST00000262803 HBS1LQ9Y450 684 aaKnown RBP19.13■□□□□ 0.65
UPF1-201ENST00000262803 C5orf60A6NFR6 353 aa19.13■□□□□ 0.65
UPF1-201ENST00000262803 TAF4O00268 1085 aa19.13■□□□□ 0.65
UPF1-201ENST00000262803 CCNE2O96020 404 aa19.13■□□□□ 0.65
UPF1-201ENST00000262803 RHOQP17081 205 aa19.13■□□□□ 0.65
UPF1-201ENST00000262803 MYL9P24844 172 aa19.13■□□□□ 0.65
UPF1-201ENST00000262803 IL12RB1P42701 662 aa19.13■□□□□ 0.65
UPF1-201ENST00000262803 EML3Q32P44 896 aa19.13■□□□□ 0.65
UPF1-201ENST00000262803 COL26A1Q96A83 441 aa19.13■□□□□ 0.65
UPF1-201ENST00000262803 VPS35Q96QK1 796 aa19.13■□□□□ 0.65
UPF1-201ENST00000262803 KCNN2Q9H2S1 579 aa19.13■□□□□ 0.65
UPF1-201ENST00000262803 TLE6Q9H808 572 aa19.13■□□□□ 0.65
UPF1-201ENST00000262803 SNPHO15079 494 aa19.12■□□□□ 0.65
UPF1-201ENST00000262803 RPP40O75818 363 aaKnown RBP19.12■□□□□ 0.65
UPF1-201ENST00000262803 TGDSO95455 350 aa19.12■□□□□ 0.65
UPF1-201ENST00000262803 ADSSP30520 456 aa19.12■□□□□ 0.65
UPF1-201ENST00000262803 CCL23P55773 120 aa19.12■□□□□ 0.65
UPF1-201ENST00000262803 GJC2Q5T442 439 aaPredicted RBP19.12■□□□□ 0.65
UPF1-201ENST00000262803 ATXN7L2Q5T6C5 722 aaPredicted RBP19.12■□□□□ 0.65
UPF1-201ENST00000262803 B3GNT6Q6ZMB0 384 aa19.12■□□□□ 0.65
UPF1-201ENST00000262803 ZC3H7AQ8IWR0 971 aaKnown RBP19.12■□□□□ 0.65
UPF1-201ENST00000262803 IZUMO1Q8IYV9 350 aa19.12■□□□□ 0.65
UPF1-201ENST00000262803 SPATA6LQ8N4H0 392 aa19.12■□□□□ 0.65
UPF1-201ENST00000262803 LRRC57Q8N9N7 239 aa19.12■□□□□ 0.65
UPF1-201ENST00000262803 PIK3C3Q8NEB9 887 aa19.12■□□□□ 0.65
UPF1-201ENST00000262803 CLDN5O00501 218 aa19.12■□□□□ 0.65
UPF1-201ENST00000262803 CAPN1P07384 714 aa19.12■□□□□ 0.65
UPF1-201ENST00000262803 ARF4P18085 180 aaPredicted RBP19.12■□□□□ 0.65
UPF1-201ENST00000262803 PRKAG1P54619 331 aa19.12■□□□□ 0.65
UPF1-201ENST00000262803 LIN54Q6MZP7 749 aa19.12■□□□□ 0.65
UPF1-201ENST00000262803 TTYH3Q9C0H2 523 aa19.12■□□□□ 0.65
UPF1-201ENST00000262803 SLC28A3Q9HAS3 691 aa19.12■□□□□ 0.65
UPF1-201ENST00000262803 PGM3O95394 542 aa19.12■□□□□ 0.65
UPF1-201ENST00000262803 HNRNPLP14866 589 aaKnown RBP eCLIP19.12■□□□□ 0.65
UPF1-201ENST00000262803 MC4RP32245 332 aa19.12■□□□□ 0.65
UPF1-201ENST00000262803 IGFALSP35858 605 aa19.12■□□□□ 0.65
UPF1-201ENST00000262803 ABHD15Q6UXT9 468 aa19.12■□□□□ 0.65
UPF1-201ENST00000262803 CPXM1Q96SM3 734 aa19.12■□□□□ 0.65
UPF1-201ENST00000262803 NUAK2Q9H093 628 aa19.12■□□□□ 0.65
UPF1-201ENST00000262803 GLOD4Q9HC38 313 aa19.12■□□□□ 0.65
UPF1-201ENST00000262803 MOXD2PA6NHM9 499 aa19.12■□□□□ 0.65
UPF1-201ENST00000262803 FARP2O94887 1054 aaPredicted RBP19.12■□□□□ 0.65
UPF1-201ENST00000262803 BPGMP07738 259 aa19.12■□□□□ 0.65
UPF1-201ENST00000262803 LCLAT1Q6UWP7 414 aa19.12■□□□□ 0.65
UPF1-201ENST00000262803 APTXQ7Z2E3 356 aaKnown RBP19.12■□□□□ 0.65
UPF1-201ENST00000262803 PNPOQ9NVS9 261 aa19.12■□□□□ 0.65
UPF1-201ENST00000262803 CLIC5Q9NZA1 410 aa19.12■□□□□ 0.65
UPF1-201ENST00000262803 HMGXB4Q9UGU5 601 aa19.12■□□□□ 0.65
UPF1-201ENST00000262803 PRR5-ARHGAP8B1AHC4 643 aa19.11■□□□□ 0.65
UPF1-201ENST00000262803 MCIDASD6RGH6 385 aa19.11■□□□□ 0.65
UPF1-201ENST00000262803 ARHGAP8P85298 464 aa19.11■□□□□ 0.65
UPF1-201ENST00000262803 RALGDSQ12967 914 aa19.11■□□□□ 0.65
UPF1-201ENST00000262803 TSHZ1Q6ZSZ6 1077 aa19.11■□□□□ 0.65
UPF1-201ENST00000262803 TTC29Q8NA56 475 aaPredicted RBP19.11■□□□□ 0.65
UPF1-201ENST00000262803 TSPAN14Q8NG11 270 aa19.11■□□□□ 0.65
UPF1-201ENST00000262803 ABCG4Q9H172 646 aa19.11■□□□□ 0.65
UPF1-201ENST00000262803 ABI3Q9P2A4 366 aa19.11■□□□□ 0.65
UPF1-201ENST00000262803 SPATA2Q9UM82 520 aa19.11■□□□□ 0.65
UPF1-201ENST00000262803 ATP6AP2A0A1C7CYW4 349 aa19.11■□□□□ 0.65
UPF1-201ENST00000262803 ATP6AP2O75787 350 aa19.11■□□□□ 0.65
UPF1-201ENST00000262803 TM4SF1P30408 202 aa19.11■□□□□ 0.65
UPF1-201ENST00000262803 GSTT1P30711 240 aa19.11■□□□□ 0.65
UPF1-201ENST00000262803 RPL38P63173 70 aaKnown RBP19.11■□□□□ 0.65
UPF1-201ENST00000262803 POU5F1Q01860 360 aaKnown RBP19.11■□□□□ 0.65
UPF1-201ENST00000262803 USP4Q13107 963 aa19.11■□□□□ 0.65
UPF1-201ENST00000262803 RNF44Q7L0R7 432 aa19.11■□□□□ 0.65
UPF1-201ENST00000262803 DET1Q7L5Y6 550 aa19.11■□□□□ 0.65
UPF1-201ENST00000262803 PLD4Q96BZ4 506 aa19.11■□□□□ 0.65
UPF1-201ENST00000262803 KLRG1Q96E93 195 aa19.11■□□□□ 0.65
UPF1-201ENST00000262803 MRPL45Q9BRJ2 306 aaKnown RBP19.11■□□□□ 0.65
UPF1-201ENST00000262803 KIFC1Q9BW19 673 aa19.11■□□□□ 0.65
UPF1-201ENST00000262803 SLC4A5Q9BY07 1137 aa19.11■□□□□ 0.65
UPF1-201ENST00000262803 IKZF3Q9UKT9 509 aa19.11■□□□□ 0.65
UPF1-201ENST00000262803 GMPPBQ9Y5P6 360 aa19.11■□□□□ 0.65
UPF1-201ENST00000262803 CNTNAP1P78357 1384 aa19.11■□□□□ 0.65
UPF1-201ENST00000262803 LRRC72A6NJI9 287 aa19.11■□□□□ 0.65
UPF1-201ENST00000262803 DUSP11O75319 330 aaKnown RBP19.11■□□□□ 0.65
UPF1-201ENST00000262803 MAXP61244 160 aa19.11■□□□□ 0.65
UPF1-201ENST00000262803 XIAPP98170 497 aa19.11■□□□□ 0.65
UPF1-201ENST00000262803 GPR158Q5T848 1215 aa19.11■□□□□ 0.65
UPF1-201ENST00000262803 OAFQ86UD1 273 aa19.11■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms