RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 PTGR2Q8N8N7 351 aaPredicted RBP10.69□□□□□ -0.7
USP28-201ENST00000003302 C19orf60Q96EN9 201 aa10.69□□□□□ -0.7
USP28-201ENST00000003302 SMARCD1Q96GM5 515 aa10.69□□□□□ -0.7
USP28-201ENST00000003302 CCT7Q99832 543 aa10.69□□□□□ -0.7
USP28-201ENST00000003302 CAMSAP3Q9P1Y5 1249 aaPredicted RBP10.69□□□□□ -0.7
USP28-201ENST00000003302 RAB26Q9ULW5 256 aa10.69□□□□□ -0.7
USP28-201ENST00000003302 SPO11Q9Y5K1 396 aa10.69□□□□□ -0.7
USP28-201ENST00000003302 TDRD15B5MCY1 1934 aaKnown RBP10.69□□□□□ -0.7
USP28-201ENST00000003302 HAS3O00219 553 aa10.69□□□□□ -0.7
USP28-201ENST00000003302 ATP5BP06576 529 aaKnown RBP10.69□□□□□ -0.7
USP28-201ENST00000003302 VARSP26640 1264 aaKnown RBP10.69□□□□□ -0.7
USP28-201ENST00000003302 ZIK1Q3SY52 487 aaPredicted RBP10.69□□□□□ -0.7
USP28-201ENST00000003302 MAP3K21Q5TCX8 1036 aa10.69□□□□□ -0.7
USP28-201ENST00000003302 SNX29P2Q8IUI4 249 aa10.69□□□□□ -0.7
USP28-201ENST00000003302 C10orf111Q8N326 155 aa10.69□□□□□ -0.7
USP28-201ENST00000003302 ADCY4Q8NFM4 1077 aa10.69□□□□□ -0.7
USP28-201ENST00000003302 UNC93B1Q9H1C4 597 aa10.69□□□□□ -0.7
USP28-201ENST00000003302 MID1IP1Q9NPA3 183 aa10.69□□□□□ -0.7
USP28-201ENST00000003302 SLC27A5Q9Y2P5 690 aa10.69□□□□□ -0.7
USP28-201ENST00000003302 DOCK6Q96HP0 2047 aa10.69□□□□□ -0.7
USP28-201ENST00000003302 VWA8A3KMH1 1905 aa10.69□□□□□ -0.7
USP28-201ENST00000003302 H0Y858 1186 aa10.69□□□□□ -0.7
USP28-201ENST00000003302 ACOX3O15254 700 aa10.69□□□□□ -0.7
USP28-201ENST00000003302 RSL1D1O76021 490 aaKnown RBP10.69□□□□□ -0.7
USP28-201ENST00000003302 TOMM70O94826 608 aa10.69□□□□□ -0.7
USP28-201ENST00000003302 SNAP29O95721 258 aa10.69□□□□□ -0.7
USP28-201ENST00000003302 PNPLA4P41247 253 aa10.69□□□□□ -0.7
USP28-201ENST00000003302 FGD3Q5JSP0 725 aa10.69□□□□□ -0.7
USP28-201ENST00000003302 ANKRD23Q86SG2 305 aa10.69□□□□□ -0.7
USP28-201ENST00000003302 RALGPS2Q86X27 583 aaPredicted RBP10.69□□□□□ -0.7
USP28-201ENST00000003302 AHI1Q8N157 1196 aa10.69□□□□□ -0.7
USP28-201ENST00000003302 DRAXINQ8NBI3 349 aaPredicted RBP10.69□□□□□ -0.7
USP28-201ENST00000003302 ARRDC2Q8TBH0 407 aa10.69□□□□□ -0.7
USP28-201ENST00000003302 TLR9Q9NR96 1032 aa10.69□□□□□ -0.7
USP28-201ENST00000003302 EXD2Q9NVH0 621 aa10.69□□□□□ -0.7
USP28-201ENST00000003302 THEGQ9P2T0 379 aa10.69□□□□□ -0.7
USP28-201ENST00000003302 VWA7Q9Y334 891 aa10.69□□□□□ -0.7
USP28-201ENST00000003302 EI24O14681 340 aa10.69□□□□□ -0.7
USP28-201ENST00000003302 BAIAP3O94812 1187 aa10.69□□□□□ -0.7
USP28-201ENST00000003302 TNFAIP8O95379 198 aa10.69□□□□□ -0.7
USP28-201ENST00000003302 SNRPB2P08579 225 aaKnown RBP10.69□□□□□ -0.7
USP28-201ENST00000003302 KIF19Q2TAC6 998 aa10.69□□□□□ -0.7
USP28-201ENST00000003302 RAP1GAP2Q684P5 730 aa10.69□□□□□ -0.7
USP28-201ENST00000003302 KLHL35Q6PF15 583 aa10.69□□□□□ -0.7
USP28-201ENST00000003302 B3GNT6Q6ZMB0 384 aa10.69□□□□□ -0.7
USP28-201ENST00000003302 SEPHS2Q99611 448 aa10.69□□□□□ -0.7
USP28-201ENST00000003302 SPAG4Q9NPE6 437 aa10.69□□□□□ -0.7
USP28-201ENST00000003302 CCDC162PA2VCL2 907 aa10.68□□□□□ -0.7
USP28-201ENST00000003302 TRMUO75648 421 aaKnown RBP10.68□□□□□ -0.7
USP28-201ENST00000003302 GOT2P00505 430 aaKnown RBP10.68□□□□□ -0.7
USP28-201ENST00000003302 GRIK1P39086 918 aa10.68□□□□□ -0.7
USP28-201ENST00000003302 HK2P52789 917 aa10.68□□□□□ -0.7
USP28-201ENST00000003302 SNX16P57768 344 aa10.68□□□□□ -0.7
USP28-201ENST00000003302 UFM1P61960 85 aa10.68□□□□□ -0.7
USP28-201ENST00000003302 PURAQ00577 322 aaKnown RBP10.68□□□□□ -0.7
USP28-201ENST00000003302 GEN1Q17RS7 908 aa10.68□□□□□ -0.7
USP28-201ENST00000003302 ARL13BQ3SXY8 428 aa10.68□□□□□ -0.7
USP28-201ENST00000003302 FAM171BQ6P995 826 aa10.68□□□□□ -0.7
USP28-201ENST00000003302 ZBTB49Q6ZSB9 765 aa10.68□□□□□ -0.7
USP28-201ENST00000003302 PIWIL4Q7Z3Z4 852 aaKnown RBP10.68□□□□□ -0.7
USP28-201ENST00000003302 DDIASQ8IXT1 998 aa10.68□□□□□ -0.7
USP28-201ENST00000003302 KLHDC8BQ8IXV7 354 aa10.68□□□□□ -0.7
USP28-201ENST00000003302 PIANPQ8IYJ0 282 aa10.68□□□□□ -0.7
USP28-201ENST00000003302 PPHLN1Q8NEY8 458 aaKnown RBP10.68□□□□□ -0.7
USP28-201ENST00000003302 OR52B6Q8NGF0 335 aa10.68□□□□□ -0.7
USP28-201ENST00000003302 ABTB1Q969K4 478 aaPredicted RBP10.68□□□□□ -0.7
USP28-201ENST00000003302 SERPINI1Q99574 410 aa10.68□□□□□ -0.7
USP28-201ENST00000003302 ARHGAP39Q9C0H5 1083 aa10.68□□□□□ -0.7
USP28-201ENST00000003302 PRDM8Q9NQV8 689 aa10.68□□□□□ -0.7
USP28-201ENST00000003302 POLG2Q9UHN1 485 aa10.68□□□□□ -0.7
USP28-201ENST00000003302 VPS28Q9UK41 221 aa10.68□□□□□ -0.7
USP28-201ENST00000003302 VPS13AQ96RL7 3174 aa10.68□□□□□ -0.7
USP28-201ENST00000003302 ANKRD36A6QL64 1941 aa10.68□□□□□ -0.7
USP28-201ENST00000003302 PLXNA4Q9HCM2 1894 aa10.68□□□□□ -0.7
USP28-201ENST00000003302 H3BNH8 94 aa10.68□□□□□ -0.7
USP28-201ENST00000003302 MLYCDO95822 493 aa10.68□□□□□ -0.7
USP28-201ENST00000003302 CCNCP24863 283 aa10.68□□□□□ -0.7
USP28-201ENST00000003302 PIK3CGP48736 1102 aa10.68□□□□□ -0.7
USP28-201ENST00000003302 HCAR3P49019 387 aa10.68□□□□□ -0.7
USP28-201ENST00000003302 CRYBB1P53674 252 aaPredicted RBP10.68□□□□□ -0.7
USP28-201ENST00000003302 SEMG2Q02383 582 aa10.68□□□□□ -0.7
USP28-201ENST00000003302 PMS2P3Q13401 168 aa10.68□□□□□ -0.7
USP28-201ENST00000003302 SLC39A12Q504Y0 691 aa10.68□□□□□ -0.7
USP28-201ENST00000003302 PAQR3Q6TCH7 311 aa10.68□□□□□ -0.7
USP28-201ENST00000003302 BTLAQ7Z6A9 289 aa10.68□□□□□ -0.7
USP28-201ENST00000003302 ZNF683Q8IZ20 524 aa10.68□□□□□ -0.7
USP28-201ENST00000003302 ZNF786Q8N393 782 aa10.68□□□□□ -0.7
USP28-201ENST00000003302 SHCBP1Q8NEM2 672 aa10.68□□□□□ -0.7
USP28-201ENST00000003302 BPIFA1Q9NP55 256 aa10.68□□□□□ -0.7
USP28-201ENST00000003302 RAD54BQ9Y620 910 aa10.68□□□□□ -0.7
USP28-201ENST00000003302 HEATR9A2RTY3 570 aa10.68□□□□□ -0.7
USP28-201ENST00000003302 CD1DP15813 335 aa10.68□□□□□ -0.7
USP28-201ENST00000003302 ELK4P28324 431 aa10.68□□□□□ -0.7
USP28-201ENST00000003302 HK3P52790 923 aa10.68□□□□□ -0.7
USP28-201ENST00000003302 CREB5Q02930 508 aa10.68□□□□□ -0.7
USP28-201ENST00000003302 TSNQ15631 228 aaKnown RBP10.68□□□□□ -0.7
USP28-201ENST00000003302 INTS6LQ5JSJ4 861 aaKnown RBP10.68□□□□□ -0.7
USP28-201ENST00000003302 PARP8Q8N3A8 854 aa10.68□□□□□ -0.7
USP28-201ENST00000003302 RPF2Q9H7B2 306 aaKnown RBP10.68□□□□□ -0.7
USP28-201ENST00000003302 PTTG2Q9NZH5 202 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms