RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 RPS3AP61247 264 aaKnown RBP3.58□□□□□ -1.84
SCN1A-221ENST00000641996 ACOX1Q15067 660 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 CHI3L2Q15782 390 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 C4orf17Q53FE4 359 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 ZNF614Q8N883 585 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 CORO2AQ92828 525 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 FAM129BQ96TA1 746 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 CUEDC2Q9H467 287 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 INIPQ9NRY2 104 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 C14orf119Q9NWQ9 140 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 AAR2Q9Y312 384 aaKnown RBP3.58□□□□□ -1.84
SCN1A-221ENST00000641996 CTDSP2O14595 271 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 PCCBP05166 539 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 MAOBP27338 520 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 GPR15P49685 360 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 NAPAP54920 295 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 BTN1A1Q13410 526 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 DNAL1Q4LDG9 190 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 OSCARQ8IYS5 282 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 TRPV1Q8NER1 839 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 PTPN18Q99952 460 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 MKRN2Q9H000 416 aaKnown RBP3.58□□□□□ -1.84
SCN1A-221ENST00000641996 TP63Q9H3D4 680 aaPredicted RBP3.58□□□□□ -1.84
SCN1A-221ENST00000641996 MARK1Q9P0L2 795 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 LBPP18428 481 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 MPIP34949 423 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 UGT2B10P36537 528 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 NR4A2P43354 598 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 RGS6P49758 472 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 PPP5CP53041 499 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 MTFR1Q15390 333 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 HIKESHIQ53FT3 197 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 TRILQ7L0X0 811 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 FAM109AQ8N4B1 249 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 FRMD1Q8N878 549 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 FNDC8Q8TC99 324 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 PXYLP1Q8TE99 480 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 HDAC11Q96DB2 347 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 TECTBQ96PL2 329 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 MGME1Q9BQP7 344 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 CPNE7Q9UBL6 633 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 DENND2AQ9ULE3 1009 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP3.58□□□□□ -1.848e-7■■■■□ 21.2
SCN1A-221ENST00000641996 A0A1B0GTQ1 180 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 ILVBLA1L0T0 632 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 JRKO75564 520 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 ITGB1P05556 798 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 GRIA1P42261 906 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 BTN3A2P78410 334 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 PRKD1Q15139 912 aaPredicted RBP3.58□□□□□ -1.84
SCN1A-221ENST00000641996 PRAMEF17Q5VTA0 474 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 FAM91A1Q658Y4 838 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 SSX6Q7RTT6 188 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 RBFAQ8N0V3 343 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 DYNC2LI1Q8TCX1 351 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 NANOS1Q8WY41 292 aaKnown RBP3.58□□□□□ -1.84
SCN1A-221ENST00000641996 OTULINQ96BN8 352 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 RGS18Q9NS28 235 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 SAMSN1Q9NSI8 373 aaKnown RBP3.58□□□□□ -1.84
SCN1A-221ENST00000641996 GSTK1Q9Y2Q3 226 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 COL6A6A6NMZ7 2263 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 F8W036 122 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 BCKDKO14874 412 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 PSMD10O75832 226 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 RSL1D1O76021 490 aaKnown RBP3.58□□□□□ -1.84
SCN1A-221ENST00000641996 YAP1P46937 504 aaKnown RBP3.58□□□□□ -1.84
SCN1A-221ENST00000641996 CDK7P50613 346 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 HSPA2P54652 639 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 SLC39A6Q13433 755 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 GSTA3Q16772 222 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 HSF5Q4G112 596 aaPredicted RBP3.58□□□□□ -1.84
SCN1A-221ENST00000641996 HERC4Q5GLZ8 1057 aaPredicted RBP3.58□□□□□ -1.84
SCN1A-221ENST00000641996 TYW3Q6IPR3 259 aaKnown RBP3.58□□□□□ -1.84
SCN1A-221ENST00000641996 ADSSL1Q8N142 457 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 CEP76Q8TAP6 659 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 SLC44A1Q8WWI5 657 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 NCSTNQ92542 709 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 RAB7BQ96AH8 199 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 ARMC5Q96C12 935 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 WDR77Q9BQA1 342 aaPredicted RBP3.58□□□□□ -1.84
SCN1A-221ENST00000641996 SEMA4AQ9H3S1 761 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 DDX31Q9H8H2 851 aaKnown RBP3.58□□□□□ -1.84
SCN1A-221ENST00000641996 CCNB1IP1Q9NPC3 277 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 BIN3Q9NQY0 253 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 ZNF536O15090 1300 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 A0A0U1RQJ8 604 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 CCT8L1PA6NM43 557 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 EYA2O00167 538 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 RBP1P09455 135 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 CYP19A1P11511 503 aaPredicted RBP3.58□□□□□ -1.84
SCN1A-221ENST00000641996 OR2B6P58173 313 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 PLOD1Q02809 727 aaPredicted RBP3.58□□□□□ -1.84
SCN1A-221ENST00000641996 ERMARDQ5T6L9 678 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 LRRC38Q5VT99 294 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 OTOAQ7RTW8 1153 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 ZC3HC1Q86WB0 502 aaKnown RBP3.58□□□□□ -1.84
SCN1A-221ENST00000641996 CFAP206Q8IYR0 622 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 ZBED8Q8IZ13 594 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 ZNF561Q8N587 486 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 ADCY4Q8NFM4 1077 aa3.58□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms