RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 STXBP1P61764 594 aaKnown RBP5.03□□□□□ -1.6
SCN1A-218ENST00000640036 PLEKHG4Q58EX7 1191 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 UBXN11Q5T124 520 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 DCAF12Q5T6F0 453 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 SIRT2Q8IXJ6 389 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 FGF13Q92913 245 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 FAM136AQ96C01 138 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 VIPAS39Q9H9C1 493 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 UBP1Q9NZI7 540 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 CFL2Q9Y281 166 aa5.03□□□□□ -1.6
SCN1A-218ENST00000640036 A0A087X0B3 334 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 WDR91A4D1P6 747 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 LEFTY2O00292 366 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 CCNT2O60583 730 aaKnown RBP5.02□□□□□ -1.61
SCN1A-218ENST00000640036 PAGE1O75459 146 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 ACSL3O95573 720 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 CREB1P16220 341 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 CD6P30203 668 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 EPHB4P54760 987 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 CTBP2P56545 445 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 GNA12Q03113 381 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 SLC13A2Q13183 592 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 CARD16Q5EG05 197 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 ACAT2Q9BWD1 397 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 LRMDAQ9H2I8 198 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 CCDC86Q9H6F5 360 aaKnown RBP5.02□□□□□ -1.61
SCN1A-218ENST00000640036 EIF2B4Q9UI10 523 aaKnown RBP5.02□□□□□ -1.61
SCN1A-218ENST00000640036 MAFBQ9Y5Q3 323 aaPredicted RBP5.02□□□□□ -1.61
SCN1A-218ENST00000640036 DIDO1Q9BTC0 2240 aaKnown RBP5.02□□□□□ -1.61
SCN1A-218ENST00000640036 COL6A6A6NMZ7 2263 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 KNDC1Q76NI1 1749 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 DOT1LQ8TEK3 1739 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 MCIDASD6RGH6 385 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 C5AR1P21730 350 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 PIK3R1P27986 724 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 SKIV2L2P42285 1042 aaKnown RBP5.02□□□□□ -1.61
SCN1A-218ENST00000640036 SHQ1Q6PI26 577 aaKnown RBP5.02□□□□□ -1.61
SCN1A-218ENST00000640036 UNQ6126/PRO20091Q6UXV3 157 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 KRT73Q86Y46 540 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 GAL3ST4Q96RP7 486 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 DESI2Q9BSY9 194 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 LRRC4CQ9HCJ2 640 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 PNPLA8Q9NP80 782 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 TMCC3Q9ULS5 477 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 C2orf71A6NGG8 1288 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 EML1O00423 815 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 FCHO1O14526 889 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 CHADO15335 359 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 DIAPH2O60879 1101 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 LARGE1O95461 756 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 GSTM1P09488 218 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 THEGLP0DJG4 465 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 TPBGLP0DKB5 382 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 ATP1A3P13637 1013 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 GLRBP48167 497 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 AIF1P55008 147 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 CASP7P55210 303 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 BDH1Q02338 343 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 STK4Q13043 487 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 DENND1BQ6P3S1 775 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 LVRNQ6Q4G3 990 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 LRRTM4Q86VH4 590 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 SNX32Q86XE0 403 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 ADCY4Q8NFM4 1077 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 RAD51AP1Q96B01 352 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 VCPIP1Q96JH7 1222 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 WDR92Q96MX6 357 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 APOL2Q9BQE5 337 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 ROGDIQ9GZN7 287 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 DHX33Q9H6R0 707 aaKnown RBP5.02□□□□□ -1.61
SCN1A-218ENST00000640036 NPHS2Q9NP85 383 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 SPHK2Q9NRA0 654 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 LINC01553A4QN01 128 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 HACD1B0YJ81 288 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 MAP2K7O14733 419 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 SOX6P35712 828 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 CD86P42081 329 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 SSR2P43308 183 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 MCL1Q07820 350 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 DSC1Q08554 894 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 ELAVL3Q14576 367 aaKnown RBP5.02□□□□□ -1.61
SCN1A-218ENST00000640036 TRIM40Q6P9F5 258 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 C15orf39Q6ZRI6 1047 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 FER1L6-AS2Q96M78 137 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 ARRDC1-AS1Q9H2J1 176 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 RAD21L1Q9H4I0 556 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 PDZD7Q9H5P4 517 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 OPTCQ9UBM4 332 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 SH3BGRL2Q9UJC5 107 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 CAPN11Q9UMQ6 739 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 BACE2Q9Y5Z0 518 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 NCF1BA6NI72 391 aaPredicted RBP5.02□□□□□ -1.61
SCN1A-218ENST00000640036 SOWAHDA6NJG2 315 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 NCF1CA8MVU1 366 aaPredicted RBP5.02□□□□□ -1.61
SCN1A-218ENST00000640036 ERBB2P04626 1255 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 PDHA1P08559 390 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 NCF1P14598 390 aaPredicted RBP5.02□□□□□ -1.61
SCN1A-218ENST00000640036 CXCR5P32302 372 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 CXCR3P49682 368 aa5.02□□□□□ -1.61
SCN1A-218ENST00000640036 GATMP50440 423 aa5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 72.6 ms